BAC Information

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BAC

Clone NameB6Ng01-298M12
Chromosome12 (Build37)
Map Location 104,800,019 - 104,918,898
singlet/doubletdoublet
Overlap gene8430415E04Rik, Serpina10, Serpina6, Gm46
Upstream geneChga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik
Downstream geneSerpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298M12.bB6Ng01-298M12.g
ACCGA093801GA093802
length1,1601,069
definitionB6Ng01-298M12.b B6Ng01-298M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,917,752 - 104,918,898)(104,800,019 - 104,801,052)
sequence
gaattccaggtggtaagccacccagtttgtggtattcgactgtggccaca
atatcacagtaacagaagtctttagaaaaggaggaacctggatactaaca
catcctgagcagatctttgttcctgaactggagtatccatgtaaggagta
cagtcagtagggtttggggaaaggaggtccctcttgcaaagttgggaacc
cgggaaatgagcatgtactaacatctgccttgggaggaatgagaggatgg
aggagtgccatcccctgggatctgaagggaaacccatgtccaggactgac
acaataggcatggagttattaccatgactgactttgggcacccaattggt
atttccaaaataaggacatccaagaagaagcattttggcttgggggtcat
gccttgagctagccactcatgagctgtctcttactgggtaatacgcatga
actcctctttgcctttcacaaaggcagaggtattcataatgccttctagg
gtttgaggttgttttttaaatatggtgctacacctaaagctccaagcatg
cagcaggtgctcaagcagtgggggcagccaccctgaaacagcattgagat
cagccaggggaggctcagtaaacttgctcaaaggcatgtttgttcaataa
acagaggcaggtgaaggtcagaggcatgtgggtgtacatgtgtagagatc
agaatcaatatccagctgctaccaggtgtttattcccattggacaggcta
agaattggttatggcttcccaccagtgcccagagaaaggcatggtagagc
agagctatggtatggagcataaaatgcagaaaatgagatttattaaataa
ttctcattttgactccagttgggtagcccttgggaaggttcaagttcttc
caacctatacttcctcatctccatgaacaagagctctgggccttctgtga
atggcaaaacactggtctataatgatagttcttcttgcctcctggcccaa
tgggcagacacccactaatcaccatggctctaactctcttgttcaaacag
ctcctaaaccacccctaccacaataatccagaatgttacaacacagaccc
aagaatgcagccaagaattgaaaacactaccaagttgtcttaagatcttc
taaggcacct

gaattccataatggattggaatggatgaattccaaatggattggggtggg
gagcagcatcctgatggttggtgtgggcattggggtggttttcagtgtgt
gaggagatggtctgtgttgagtgcacaggtggcaataatctgagtccttg
ctaatattggtctttcatgattcactttgagtatctcatgcaggaagtaa
gtattcccaagggctttatcacttctgtggctcctcctagccagctccca
gagctcagcccttaccttgcttcacctaaaagaacacgaggaaaagggat
gtgggaggctttgctggtggtgcaggttataatattgtactggtgataat
cttatttgtttactatatttgcatcttatccttactactgggccttaatt
aaaatatgctttttttaaaaaaatgaggcaacctattttcactgttttaa
agatgaaggaatttggctttttcttttctttctttttgttatgtttttgt
ttgttttgagacaaggtctctctaggtagtcctggctgtcctcagatttt
ctatgtagatcaggctgtcctcaaactcaaaatactcccaattgctggga
tcaaaggtgtgagccacatctagctgagatgaagaaaatttgactttaaa
acagcagcagctgggggagatgatggttcagcagttaggaatgaaaactg
ttctttccagaaaatctgagcttggctctcagcacccagataagggtaca
gctactttaaattccagctccaggaaatctgatgccctcttctggcctct
gtgggcactgaactctcacctgttcatacaacgtgtgtgcaatgtgctca
cgtgcgcgcgcgcggacacacacacacacacaaacacacacaacaattaa
aatctacaagcaaaataagtaaaatataaaaattaggattattaattgta
ctagtttttattatattttacaaaatctcctttcaaaactggaatccaaa
agtggaatggtaatatgtttgttgtacttcctcaagggtagaattttaag
tagaaatccagaaaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104917752_104918898
seq2: B6Ng01-298M12.b_47_1206 (reverse)

seq1  AGGTGCTTTAG-AGATCTTAAGGACAACTTGGTAAGTTGTTTTCA--TCT  47
      |||||| |||| ||||||||| ||||||||||||   ||||||||  |||
seq2  AGGTGCCTTAGAAGATCTTAA-GACAACTTGGTA--GTGTTTTCAATTCT  47

seq1  TGGCTGCCATCTTGGGTCCTGTGTGGT-ACATCCTGGATTATTGTGGTAG  96
      |||||||  |||||||| |||||| || |||| |||||||||||||||||
seq2  TGGCTGCATTCTTGGGT-CTGTGTTGTAACATTCTGGATTATTGTGGTAG  96

seq1  GGGTG--TTTGGAGCTGTTTGAAC-AGAGAAGTAGAGCCATGGTGATTAG  143
      |||||  || |||||||||||||| |||||  ||||||||||||||||||
seq2  GGGTGGTTTAGGAGCTGTTTGAACAAGAGAGTTAGAGCCATGGTGATTAG  146

seq1  T-GGTGTCTG-CCAT--GGGCAGGAGGGCAGAAGAACTATCA-TATAGAC  188
      | |||||||| ||||  || |||||||  ||||||||||||| |||||||
seq2  TGGGTGTCTGCCCATTGGGCCAGGAGGCAAGAAGAACTATCATTATAGAC  196

seq1  CAGTG-TTTGCCATTCACAGA--GGCCAGAGCTCTTG-TCATGGAGATGA  234
      ||||| |||||||||||||||  | |||||||||||| ||||||||||||
seq2  CAGTGTTTTGCCATTCACAGAAGGCCCAGAGCTCTTGTTCATGGAGATGA  246

seq1  GGAAGTATAGGTTGGAAGAACCTGAACCTTCCCAAGGGCTACCCAACTGG  284
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAAGTATAGGTTGGAAGAACTTGAACCTTCCCAAGGGCTACCCAACTGG  296

seq1  AGTCAAAATGAGAATTATTTAATAAATCTCATTTTCTGCATTTTATGCTC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAATGAGAATTATTTAATAAATCTCATTTTCTGCATTTTATGCTC  346

seq1  CATACCATAGCTCTGCTCTACCATGCC-TTCTCTGGGCACTGGTGGGAAG  383
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATACCATAGCTCTGCTCTACCATGCCTTTCTCTGGGCACTGGTGGGAAG  396

seq1  CCATAACCAATTCTTAGCCTGTCCAATGGGAATAAACACCTGGTAGCAGC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACCAATTCTTAGCCTGTCCAATGGGAATAAACACCTGGTAGCAGC  446

seq1  TGGATATTGATTCTGATCTCTACACATGTACACCCACATGCCTCTGACCT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTGATTCTGATCTCTACACATGTACACCCACATGCCTCTGACCT  496

seq1  TCACCTGCCTCTGTTTATTGAACAAACATGCCTTTGAGCAAGTTTACTGA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCCTCTGTTTATTGAACAAACATGCCTTTGAGCAAGTTTACTGA  546

seq1  GCCTCCCCTGGCTGATCTCAATGCTGTTTCAGGGTGGCTGCCCCCACTGC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCTGGCTGATCTCAATGCTGTTTCAGGGTGGCTGCCCCCACTGC  596

seq1  TTGAGCACCTGCTGCATGCTTGGAGCTTTAGGTGTAGCACCATATTTAAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCACCTGCTGCATGCTTGGAGCTTTAGGTGTAGCACCATATTTAAA  646

seq1  AAACAACCTCAAACCCTAGAAGGCATTATGAATACCTCTGCCTTTGTGAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCTCAAACCCTAGAAGGCATTATGAATACCTCTGCCTTTGTGAA  696

seq1  AGGCAAAGAGGAGTTCATGCGTATTACCCAGTAAGAGACAGCTCATGAGT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGAGGAGTTCATGCGTATTACCCAGTAAGAGACAGCTCATGAGT  746

seq1  GGCTAGCTCAAGGCATGACCCCCAAGCCAAAATGCTTCTTCTTGGATGTC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCTCAAGGCATGACCCCCAAGCCAAAATGCTTCTTCTTGGATGTC  796

seq1  CTTATTTTGGAAATACCAATTGGGTGCCCAAAGTCAGTCATGGTAATAAC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTGGAAATACCAATTGGGTGCCCAAAGTCAGTCATGGTAATAAC  846

seq1  TCCATGCCTATTGTGTCAGTCCTGGACATGGGTTTCCCTTCAGATCCCAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCTATTGTGTCAGTCCTGGACATGGGTTTCCCTTCAGATCCCAG  896

seq1  GGGATGGCACTCCTCCATCCTCTCATTCCTCCCAAGGCAGATGTTAGTAC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCACTCCTCCATCCTCTCATTCCTCCCAAGGCAGATGTTAGTAC  946

seq1  ATGCTCATTTCCCGGGTTCCCAACTTTGCAAGAGGGACCTCCTTTCCCCA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATTTCCCGGGTTCCCAACTTTGCAAGAGGGACCTCCTTTCCCCA  996

seq1  AACCCTACTGACTGTACTCCTTACATGGATACTCCAGTTCAGGAACAAAG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTACTGACTGTACTCCTTACATGGATACTCCAGTTCAGGAACAAAG  1046

seq1  ATCTGCTCAGGATGTGTTAGTATCCAGGTTCCTCCTTTTCTAAAGACTTC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCAGGATGTGTTAGTATCCAGGTTCCTCCTTTTCTAAAGACTTC  1096

seq1  TGTTACTGTGATATTGTGGCCACAGTCGAATACCACAAACTGGGTGGCTT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGTGATATTGTGGCCACAGTCGAATACCACAAACTGGGTGGCTT  1146

seq1  ACCACCTGGAATTC  1147
      ||||||||||||||
seq2  ACCACCTGGAATTC  1160


seq1: chr12_104800019_104801052
seq2: B6Ng01-298M12.g_67_1118

seq1  GAATTCCATAATGGATTGGAATGGATGAATTCCAAATGGATTGGGGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATGGATTGGAATGGATGAATTCCAAATGGATTGGGGTGGG  50

seq1  GAGCAGCATCCTGATGGTTGGTGTGGGCATTGGGGTGGTTTTCAGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCATCCTGATGGTTGGTGTGGGCATTGGGGTGGTTTTCAGTGTGT  100

seq1  GAGGAGATGGTCTGTGTTGAGTGCACAGGTGGCAATAATCTGAGTCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGGTCTGTGTTGAGTGCACAGGTGGCAATAATCTGAGTCCTTG  150

seq1  CTAATATTGGTCTTTCATGATTCACTTTGAGTATCTCATGCAGGAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTGGTCTTTCATGATTCACTTTGAGTATCTCATGCAGGAAGTAA  200

seq1  GTATTCCCAAGGGCTTTATCACTTCTGTGGCTCCTCCTAGCCAGCTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCCAAGGGCTTTATCACTTCTGTGGCTCCTCCTAGCCAGCTCCCA  250

seq1  GAGCTCAGCCCTTACCTTGCTTCACCTAAAAGAACACGAGGAAAAGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGCCCTTACCTTGCTTCACCTAAAAGAACACGAGGAAAAGGGAT  300

seq1  GTGGGAGGCTTTGCTGGTGGTGCAGGTTATAATATTGTACTGGTGATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGCTTTGCTGGTGGTGCAGGTTATAATATTGTACTGGTGATAAT  350

seq1  CTTATTTGTTTACTATATTTGCATCTTATCCTTACTACTGGGCCTTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGTTTACTATATTTGCATCTTATCCTTACTACTGGGCCTTAATT  400

seq1  AAAATATGCTTTTTTTAAAAAAATGAGGCAACCTATTTTCACTGTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGCTTTTTTTAAAAAAATGAGGCAACCTATTTTCACTGTTTTAA  450

seq1  AGATGAAGGAATTTGGCTTTTTCTTTTCTTTCTTTTTGTTATGTTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGGAATTTGGCTTTTTCTTTTCTTTCTTTTTGTTATGTTTTTGT  500

seq1  TTGTTTTGAGACAAGGTCTCTCTAGGTAGTCCTGGCTGTCCTCAGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAGACAAGGTCTCTCTAGGTAGTCCTGGCTGTCCTCAGATTTT  550

seq1  CTATGTAGATCAGGCTGTCCTCAAACTCAAAATACTCCCAATTGCTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGATCAGGCTGTCCTCAAACTCAAAATACTCCCAATTGCTGGGA  600

seq1  TCAAAGGTGTGAGCCACATCTAGCTGAGATGAAGAAAATTTGACTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTGTGAGCCACATCTAGCTGAGATGAAGAAAATTTGACTTTAAA  650

seq1  ACAGCAGCAGCT-GGGGAGATGATGGTTCAGCAGTTAGGAATGAAAACTG  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCAGCTGGGGGAGATGATGGTTCAGCAGTTAGGAATGAAAACTG  700

seq1  TTC-TTCCAGAAAATCTGAGCTTGGCTCTCAGCACCCAGATAA-GGTACA  747
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTTTCCAGAAAATCTGAGCTTGGCTCTCAGCACCCAGATAAGGGTACA  750

seq1  GCTACTTT-AATTCCAGCTCCAGGAAATCTGATGCCCTCTTCTGGCCTCT  796
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTAAATTCCAGCTCCAGGAAATCTGATGCCCTCTTCTGGCCTCT  800

seq1  GTGGGCACTGAACTCTCACCTGTTCATAC-ACGTGTGTGC-ATGTGCTCA  844
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  GTGGGCACTGAACTCTCACCTGTTCATACAACGTGTGTGCAATGTGCTCA  850

seq1  CGTGCGCGCGCGCGGACACACACACACACACAAACACACACAACAATT-A  893
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CGTGCGCGCGCGCGGACACACACACACACACAAACACACACAACAATTAA  900

seq1  AATCTACAAGCAAAATAAGTAAAATATAAAAATTAGGATTA-TAATTGTA  942
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATCTACAAGCAAAATAAGTAAAATATAAAAATTAGGATTATTAATTGTA  950

seq1  CTAG-TTTTATTATA-TTTACAAAATCTCCTTTCAAAACTGG-ATCC-AA  988
      |||| |||||||||| |||||||||||||||||||||||||| |||| ||
seq2  CTAGTTTTTATTATATTTTACAAAATCTCCTTTCAAAACTGGAATCCAAA  1000

seq1  AGTGG-ATGGTAATATGTT--GTGTACTT-CTCAA-GGTAGAA-TTTAAG  1032
      ||||| |||||||||||||   ||||||| ||||| ||||||| ||||||
seq2  AGTGGAATGGTAATATGTTTGTTGTACTTCCTCAAGGGTAGAATTTTAAG  1050

seq1  TA  1034
      ||
seq2  TA  1052


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