BAC Information

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BAC

Clone NameB6Ng01-298N09
Chromosome12 (Build37)
Map Location 25,672,059 - 25,732,231
singlet/doubletdoublet
Overlap geneC330002I19Rik
Upstream geneLOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397
Downstream geneId2, LOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298N09.bB6Ng01-298N09.g
ACCGA093843GA093844
length1,0671,095
definitionB6Ng01-298N09.b B6Ng01-298N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,731,172 - 25,732,231)(25,672,059 - 25,673,159)
sequence
gaattctatttcaaagcaacaaccactgttgttaattattcttctgtact
taaaaaaaaatcagtggcaaatatttttaaatgcttaaaacagtctactg
atgactgacaaattcatacagtcaactgaacacggtgttttagtgaacaa
ggggcagggttcagtagcctacgctcagacgtccatctgtgaacacgacc
aatatcaaatccacagtgggaacctcgtctactgtttactgtcagactca
ggcaagcttctagaaggtgactgtacacacatgcacacttggatgagcag
aggtatcagacaagtgcagtggagcggtaaccactgtaggaaggccccaa
acaagaagcacaagcgttaattagctgtaaatgcaactttgactcttctc
cctcctgtgctattatgatcactacataacttattcttcaaagtgctgga
gaaacaactctgtcaaggctgatggacgaggcttagaaggctgaacacta
tagcttaaggactgcaattcaaaggagggaaaacaagtagcaacatgttc
gtctgctttgtaaccttaaagtgttttacattttatttatttgtatgtgt
atggatgttttgactgcatctgtgtatatatattaatgcagtgctcgtgg
aggccaatggatgccctgggactggtgttacaagtcgaacagccatgtgg
tgctggctggaattcgaacctgggtcctccagagggtcagtgctctcagc
cactgtaccatctttccaccccaccccacacactttttaatgtctagcta
tacctaggacttcaacattactataataccacctataaaaaatatttcag
tccatttacctgaaattcagagaaaaaaaaattgaattgaaacctggcat
aaagacttccatgcagaaagtaaataatattcttgggctatatttcaata
aagggggggagaagcccctagcactttccccctagtttcaggtagaataa
taaaaaccacttcgtaagtactgttaaagggtgcataattgttccagctg
gtttgacactactgcag
gaattccaggctagccagtgcaacatagtgagccattgcatcaaaataaa
taaataaacaaataagtattttaaaaagtgctttgaaattaagaaaaaga
ataaattgccctgtcctaggttccttcgactactagtacatagagaaaga
gaggggttgtacagcttgggattcagttctgttcctagggccatgagagt
tgagatttctgtggagaaactgtatttatgacttagtgtttcaaggtctc
tcactctccatacattgttccattgtagatttgttcccatctgctgctga
aggaaccttctcttgacagtgactgagaaataaactggtgtatgaatcta
aaaaaaagtgctttgaaatatatctcacctttgcctaatgtgctacaggt
ttttgttgttatttttatttgtttacctctttaatcaggagagatttttt
tttttgcttataactgagtatatctgcacctcatgtttttcctatgtaca
tggcactctgaagctcatatctgtgcaattaaatgtctctagaatatttc
aatgtatgagccatgctgttaagtgattctctgtaattataatttatagt
gttccttggtaattgtcccttctgatactgcttctgagggacaaatcacc
acccagtttcctttgagttcccagtgttctcagagtcaccttcaggatca
catggctacattcttttgctttgagtgaccatgtgaattatttgttttta
aacagtctcattgtgtagacctccttctgactctccagtgctgggattaa
aagcatgtgccaccactcttggtgtgatcatttgaattaattcactccct
aaataaacgttaggacaattctgttctcacagttctttgtcacatctttc
taatgtccctgcttgctgctgtactgaatactgtaatactgaatgagtgt
gtgagtgtgcaggtgtggtgagtggtgtcctaatggcagattgcaggctc
tttatttgtggacagttgctagctgcgcgattgcccttagtttagtggcc
actttttctctttctacaattggaatgtgagagagtccaagggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_25731172_25732231
seq2: B6Ng01-298N09.b_49_1115 (reverse)

seq1  CTGCAGTAGTGTC-AACCAGCTGGAAC-ATTATGCACCCTTTTAACAGTA  48
      ||||||||||||| ||||||||||||| ||||||||||| ||||||||||
seq2  CTGCAGTAGTGTCAAACCAGCTGGAACAATTATGCACCC-TTTAACAGTA  49

seq1  CTTACGAAGTGGTTTTTATTATTCTACTTG-AACTAGGGGG-AAGTGCTA  96
      ||||||||||||||||||||||||||| || |||||||||| ||||||||
seq2  CTTACGAAGTGGTTTTTATTATTCTACCTGAAACTAGGGGGAAAGTGCTA  99

seq1  GGGGCTTCT-CCCCCCTTTATTGAAATATAG-CCAAGAATA-TATTTACT  143
      ||||||||| ||||||||||||||||||||| ||||||||| ||||||||
seq2  GGGGCTTCTCCCCCCCTTTATTGAAATATAGCCCAAGAATATTATTTACT  149

seq1  TTCTGCATGGAAGTCTTTATGCCAGGTTTCAATTCAA-TTTTTTTTCTCT  192
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCTGCATGGAAGTCTTTATGCCAGGTTTCAATTCAATTTTTTTTTCTCT  199

seq1  GAATTTCAGGTAAATGGACTGAAATATTTTTTATAGGTGGTATTATAGTA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAGGTAAATGGACTGAAATATTTTTTATAGGTGGTATTATAGTA  249

seq1  ATGTTGAAGTCCTAGGTATAGCTAGACATTAAAAAGTGTGTGGGGTGGGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAGTCCTAGGTATAGCTAGACATTAAAAAGTGTGTGGGGTGGGG  299

seq1  TGGAAAGATGGTACAGTGGCTGAGAGCACTGACCCTCTGGAGGACCCAGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGATGGTACAGTGGCTGAGAGCACTGACCCTCTGGAGGACCCAGG  349

seq1  TTCGAATTCCAGCCAGCACCACATGGCTGTTCGACTTGTAACACCAGTCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAATTCCAGCCAGCACCACATGGCTGTTCGACTTGTAACACCAGTCC  399

seq1  CAGGGCATCCATTGGCCTCCACGAGCACTGCATTAATATATATACACAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCATCCATTGGCCTCCACGAGCACTGCATTAATATATATACACAGA  449

seq1  TGCAGTCAAAACATCCATACACATACAAATAAATAAAATGTAAAACACTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCAAAACATCCATACACATACAAATAAATAAAATGTAAAACACTT  499

seq1  TAAGGTTACAAAGCAGACGAACATGTTGCTACTTGTTTTCCCTCCTTTGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTACAAAGCAGACGAACATGTTGCTACTTGTTTTCCCTCCTTTGA  549

seq1  ATTGCAGTCCTTAAGCTATAGTGTTCAGCCTTCTAAGCCTCGTCCATCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTCCTTAAGCTATAGTGTTCAGCCTTCTAAGCCTCGTCCATCAG  599

seq1  CCTTGACAGAGTTGTTTCTCCAGCACTTTGAAGAATAAGTTATGTAGTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACAGAGTTGTTTCTCCAGCACTTTGAAGAATAAGTTATGTAGTGA  649

seq1  TCATAATAGCACAGGAGGGAGAAGAGTCAAAGTTGCATTTACAGCTAATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATAGCACAGGAGGGAGAAGAGTCAAAGTTGCATTTACAGCTAATT  699

seq1  AACGCTTGTGCTTCTTGTTTGGGGCCTTCCTACAGTGGTTACCGCTCCAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTTGTGCTTCTTGTTTGGGGCCTTCCTACAGTGGTTACCGCTCCAC  749

seq1  TGCACTTGTCTGATACCTCTGCTCATCCAAGTGTGCATGTGTGTACAGTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGTCTGATACCTCTGCTCATCCAAGTGTGCATGTGTGTACAGTC  799

seq1  ACCTTCTAGAAGCTTGCCTGAGTCTGACAGTAAACAGTAGACGAGGTTCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTAGAAGCTTGCCTGAGTCTGACAGTAAACAGTAGACGAGGTTCC  849

seq1  CACTGTGGATTTGATATTGGTCGTGTTCACAGATGGACGTCTGAGCGTAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGATTTGATATTGGTCGTGTTCACAGATGGACGTCTGAGCGTAG  899

seq1  GCTACTGAACCCTGCCCCTTGTTCACTAAAACACCGTGTTCAGTTGACTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGAACCCTGCCCCTTGTTCACTAAAACACCGTGTTCAGTTGACTG  949

seq1  TATGAATTTGTCAGTCATCAGTAGACTGTTTTAAGCATTTAAAAATATTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTGTCAGTCATCAGTAGACTGTTTTAAGCATTTAAAAATATTT  999

seq1  GCCACTGATTTTTTTTTAAGTACAGAAGAATAATTAACAACAGTGGTTGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGATTTTTTTTTAAGTACAGAAGAATAATTAACAACAGTGGTTGT  1049

seq1  TGCTTTGAAATAGAATTC  1060
      ||||||||||||||||||
seq2  TGCTTTGAAATAGAATTC  1067

seq1: chr12_25672059_25673159
seq2: B6Ng01-298N09.g_67_1161

seq1  GAATTCCAGGCTAGCCAGTGCAACATAGTGAGCCATTGCATCAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTAGCCAGTGCAACATAGTGAGCCATTGCATCAAAATAAA  50

seq1  TAAATAAACAAATAAGTATTTTAAAAAGTGCTTTGAAATTAAGAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAACAAATAAGTATTTTAAAAAGTGCTTTGAAATTAAGAAAAAGA  100

seq1  ATAAATTGCCCTGTCCTAGGTTCCTTCGACTACTAGTACATAGAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGCCCTGTCCTAGGTTCCTTCGACTACTAGTACATAGAGAAAGA  150

seq1  GAGGGGTTGTACAGCTTGGGATTCAGTTCTGTTCCTAGGGCCATGAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTTGTACAGCTTGGGATTCAGTTCTGTTCCTAGGGCCATGAGAGT  200

seq1  TGAGATTTCTGTGGAGAAACTGTATTTATGACTTAGTGTTTCAAGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTCTGTGGAGAAACTGTATTTATGACTTAGTGTTTCAAGGTCTC  250

seq1  TCACTCTCCATACATTGTTCCATTGTAGATTTGTTCCCATCTGCTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTCCATACATTGTTCCATTGTAGATTTGTTCCCATCTGCTGCTGA  300

seq1  AGGAACCTTCTCTTGACAGTGACTGAGAAATAAACTGGTGTATGAATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTTCTCTTGACAGTGACTGAGAAATAAACTGGTGTATGAATCTA  350

seq1  AAAAAAAGTGCTTTGAAATATATCTCACCTTTGCCTAATGTGCTACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTGCTTTGAAATATATCTCACCTTTGCCTAATGTGCTACAGGT  400

seq1  TTTTGTTGTTATTTTTATTTGTTTACCTCTTTAATCAGGAGAGATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTATTTTTATTTGTTTACCTCTTTAATCAGGAGAGATTTTTT  450

seq1  TTTTTGCTTATAACTGAGTATATCTGCACCTCATGTTTTTCCTATGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTATAACTGAGTATATCTGCACCTCATGTTTTTCCTATGTACA  500

seq1  TGGCACTCTGAAGCTCATATCTGTGCAATTAAATGTCTCTAGAATATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTCTGAAGCTCATATCTGTGCAATTAAATGTCTCTAGAATATTTC  550

seq1  AATGTATGAGCCATGCTGTTAAGTGATTCTCTGTAATTATAATTTATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGAGCCATGCTGTTAAGTGATTCTCTGTAATTATAATTTATAGT  600

seq1  GTTCCTTGGTAATTGTCCCTTCTGATACTGCTTCTGAGGGACAAATCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGGTAATTGTCCCTTCTGATACTGCTTCTGAGGGACAAATCACC  650

seq1  ACCCAGTTTCCTTTGAGTTCCCAGTGTTCTCAGAGTCACCTTCAGGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTTCCTTTGAGTTCCCAGTGTTCTCAGAGTCACCTTCAGGATCA  700

seq1  CATGGCTACATTCTTTTGCTTTGAGTGACCATGTGAATTATTTGTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATGGCTACATTCTTTTGCTTTGAGTGACCATGTGAATTATTTGTTTTT-  749

seq1  AAACAGTCTCATTGTGTAGACCTCCTTCTGACTCTCCAGTGCTGGGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCTCATTGTGTAGACCTCCTTCTGACTCTCCAGTGCTGGGATTA  799

seq1  AAAGCATGTGCCACCACTCTTGGTGTGATCATTTGAATTAATTCACTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGTGCCACCACTCTTGGTGTGATCATTTGAATTAATTCACTCCC  849

seq1  TAAATAAACGTTAGGACAATTCTGTTCTCACAGTTCTTTGTCACAATCTT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAATAAACGTTAGGACAATTCTGTTCTCACAGTTCTTTGTCAC-ATCTT  898

seq1  TCTAATGTCCCTGCTTGCTGCTGTACTGAATACTGTAATACTGAATGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTCCCTGCTTGCTGCTGTACTGAATACTGTAATACTGAATGAGT  948

seq1  GTGTGAGTGTGCAAGTGT-GTGAGT-GTGTCCTTATGGCAGATTGCAGGC  998
      ||||||||||||| |||| |||||| ||||||| ||||||||||||||||
seq2  GTGTGAGTGTGCAGGTGTGGTGAGTGGTGTCCTAATGGCAGATTGCAGGC  998

seq1  TCTTTAATTTGTGGAACAGTTGCTAGCTGCGCGATTGCCCTTTAGGTTTT  1048
      ||||| |||||||| ||||||||||||||||||||||||| ||||  |||
seq2  TCTTT-ATTTGTGG-ACAGTTGCTAGCTGCGCGATTGCCC-TTAG--TTT  1043

seq1  AGTGGCCACTTTTCTCCTTTCTACAAAATGGGATGTGAGAGAGGTCCAGG  1098
      |||||||||||||   |||||||| || ||| |||||||||||  | |||
seq2  AGTGGCCACTTTTTCTCTTTCTAC-AATTGGAATGTGAGAGAGTCCAAGG  1092

seq1  GTG  1101
      |||
seq2  GTG  1095