BAC Information

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BAC

Clone NameB6Ng01-298P08
Chromosome12 (Build37)
Map Location 49,516,095 - 49,666,752
singlet/doubletdoublet
Overlap geneGm1818
Upstream geneEG664891
Downstream geneGA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298P08.bB6Ng01-298P08.g
ACCGA093930GA093931
length1,1781,056
definitionB6Ng01-298P08.b B6Ng01-298P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,516,095 - 49,517,273)(49,665,688 - 49,666,752)
sequence
gaattccacagaattaaaattaattaatatttactcctttttgtactctg
ttttctccgggagtttcagctgcgaattgatctattatgataccaaacac
aagagaaatagcaagaaatatattttgtgtgtaactgtgctcttcataag
gtatcaatgtataattttaagctgagcataaaattgtgaagaataaaatt
gtctgtaaactgagggtttgaagccttaacctgacagttcttagttatat
aatccacaacaacttcatcttgttattttaaaatacaggtaaaatactca
ctcttatgacaataatacaatattgagagatataaatgggttaatagaga
tataatgctagactactgacttctttataatattcagtatgttactttta
gattttgttaatacatgaagcaatgcattgacttttgcattgtatatttg
tatattacaaatggacatttttttcagtaaatttttaagggttaactttt
tcaaagtatgttgacattgtcatgcattatctcatcatattataaaaatg
gaatttgaccctgttggagacttaaagttctctcatgtgtattttatgca
taccattctgtaattctgatctagtagagaccaaaatataaatttctcct
aattaaaataaacttttaagatagtaaataatcatgttatcaatttccta
ggacagaggaatatatgtttcatggctccaattattgaaggtcacattac
tttatttattatgtgttacattgaaaagtgtgtgacagaaagtaaaatga
atttagtcatttgagtcaacaatgagcaaatgacatctgtgccattttaa
ccggtaaaatttaacaatttactaaaaatgttaatccatgtttggaaaaa
acaatcacctaatattgttacaatttactaactgtcctagttaaaggttt
tgttgctgtgaagagtcactatgatgaagaaaactcttataaagaaaaca
ttagtgaggctgggtaaagttcagagtttatccatttcatcatggttggc
atcgtgttagcatgtacccagacgtgaatgttggagatggagcaagagtt
ctacgtgtgatacaagggccagaggaaacggactgctgcttactgggtgt
agctcaaggcatagggaagtctcaccac

gaattcttcttgctctcatggtttgaactcaaaagttaataattattttg
ataatcagactttatgtacttcagatttccatagatattctttgtcctgt
atatatttaatgttttaactataaaatttcctctagagtttcttttctct
tcctatatgtttgttattctccttacctcttgaatatctatgggattcct
tttctccattttggggattttatatgattttattaaaaatattttctatg
ccctttataggaaataacttcttattaaataacatttaatgaagtctcta
agttcttgtctattctactcatccatttagactatcattgaaatttacca
agattatctagttcaatttcttcttcatagcctaatactttgccttacat
gtgatccattctactatggaggcttttcactaaactttttatttcatcta
ctatatttttttccattatcaagtcagtttgttctattttagcatttcta
tctcataattacactctattttgatattatatatttttaattttatcaga
tataattctcacaggaaaaaaaacaccaaaaaaccccctgagtcttcttt
atgctactttacctctggaaagtcatttgattggggatcattactatagt
attcatgatttttggaggagacaaattgttttaatttccatatactactt
gattttaggtttcggttctgaagatctggggttagttacactgatgatca
agatttttgttcttgctacattgtttttcattcagttccttgtcttcatt
tagtggatatgtttgcaatattcaggagaaactgcattatatatagctct
gctgatctaccttactgcccaacttctgttccaatctatttttttatgtt
gagtactatttgctatagtaactgtctagtgattatttgctcagaaaatt
taaatagcaagttatatagagcaaaccatttaagtatcaatttatttgag
gtaaatgacaccaacactactactatatattaatagtcatatgatgggga
aagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_49516095_49517273
seq2: B6Ng01-298P08.b_48_1225

seq1  GAATTCCACAGAATTAAAATTAATTAATATTTACTCCTTTTTGTACTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAATTAAAATTAATTAATATTTACTCCTTTTTGTACTCTG  50

seq1  TTTTCTCCGGGAGTTTCAGCTGCGAATTGATCTATTATGATACCAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCGGGAGTTTCAGCTGCGAATTGATCTATTATGATACCAAACAC  100

seq1  AAGAGAAATAGCAAGAAATATATTTTGTGTGTAACTGTGCTCTTCATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATAGCAAGAAATATATTTTGTGTGTAACTGTGCTCTTCATAAG  150

seq1  GTATCAATGTATAATTTTAAGCTGAGCATAAAATTGTGAAGAATAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAATGTATAATTTTAAGCTGAGCATAAAATTGTGAAGAATAAAATT  200

seq1  GTCTGTAAACTGAGGGTTTGAAGCCTTAACCTGACAGTTCTTAGTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAAACTGAGGGTTTGAAGCCTTAACCTGACAGTTCTTAGTTATAT  250

seq1  AATCCACAACAACTTCATCTTGTTATTTTAAAATACAGGTAAAATACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACAACAACTTCATCTTGTTATTTTAAAATACAGGTAAAATACTCA  300

seq1  CTCTTATGACAATAATACAATATTGAGAGATATAAATGGGTTAATAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGACAATAATACAATATTGAGAGATATAAATGGGTTAATAGAGA  350

seq1  TATAATGCTAGACTACTGACTTCTTTATAATATTCAGTATGTTACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGCTAGACTACTGACTTCTTTATAATATTCAGTATGTTACTTTTA  400

seq1  GATTTTGTTAATACATGAAGCAATGCATTGACTTTTGCATTGTATATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTAATACATGAAGCAATGCATTGACTTTTGCATTGTATATTTG  450

seq1  TATATTACAAATGGACATTTTTTTCAGTAAATTTTTAAGGGTTAACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACAAATGGACATTTTTTTCAGTAAATTTTTAAGGGTTAACTTTT  500

seq1  TCAAAGTATGTTGACATTGTCATGCATTATCTCATCATATTATAAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTATGTTGACATTGTCATGCATTATCTCATCATATTATAAAAATG  550

seq1  GAATTTGACCCTGTTGGAGACTTAAAGTTCTCTCATGTGTATTTTATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGACCCTGTTGGAGACTTAAAGTTCTCTCATGTGTATTTTATGCA  600

seq1  TACCATTCTGTAATTCTGATCTAGTAGAGACCAAAATATAAATTTCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTCTGTAATTCTGATCTAGTAGAGACCAAAATATAAATTTCTCCT  650

seq1  AATTAAAATAAACTTTTAAGATAGTAAATAATCATGTTATCAATTTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATAAACTTTTAAGATAGTAAATAATCATGTTATCAATTTCCTA  700

seq1  GGACAGAGGAATATATGTTTCATGGCTCCAATTATTGAAGGTCACATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGGAATATATGTTTCATGGCTCCAATTATTGAAGGTCACATTAC  750

seq1  TTTATTTATTATGTGTTACATTGAAAAGTGTGTGACAGAAAGTAAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTATGTGTTACATTGAAAAGTGTGTGACAGAAAGTAAAATGA  800

seq1  ATTTAGTCATTTGAGTCAACAATGAGCAAATGACATCTGTGCCATTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCATTTGAGTCAACAATGAGCAAATGACATCTGTGCCATTTTAA  850

seq1  CCGGTAAAATTTAACAATTTACTAAAAATGTTAATCCATG-TTGGAAAAA  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCGGTAAAATTTAACAATTTACTAAAAATGTTAATCCATGTTTGGAAAAA  900

seq1  ACAATCACCTAATATTGTTACAATTTACTAACTGTCCTAGTT-AAGGTTT  948
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAATCACCTAATATTGTTACAATTTACTAACTGTCCTAGTTAAAGGTTT  950

seq1  TGTTGCTGTGAAGAGTCACTATGATGAAGAAAACTCTTATAAAGAAAAAC  998
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTTGCTGTGAAGAGTCACTATGATGAAGAAAACTCTTATAAAG-AAAAC  999

seq1  ATTTAGTTGAGGCTGGTTAAAAGTTTCAGAAGTTTATCCATTTTCATCAT  1048
      | |||| ||||||||| ||||   ||||| |||||||||| |||||||||
seq2  A-TTAG-TGAGGCTGGGTAAA--GTTCAG-AGTTTATCCA-TTTCATCAT  1043

seq1  GGTGGGAATCGTGGTAGCATGTACCCAGACGTG-ATGTTGGAGAATGAGC  1097
      ||| || |||||| ||||||||||||||||||| ||||||||||  ||||
seq2  GGTTGGCATCGTGTTAGCATGTACCCAGACGTGAATGTTGGAGATGGAGC  1093

seq1  -AGAGTTCTACGTGTTGATACAAAGGCAAGA-GAAAGGGACTGTGTGCTA  1145
       ||||||||||||| |||||||| ||| ||| |||| ||||||  |||| 
seq2  AAGAGTTCTACGTG-TGATACAAGGGCCAGAGGAAACGGACTG-CTGCT-  1140

seq1  TACTGGGTGTAGCTCAA-GCATAGG--AG-CTCACCAC  1179
      ||||||||||||||||| |||||||  || ||||||||
seq2  TACTGGGTGTAGCTCAAGGCATAGGGAAGTCTCACCAC  1178


seq1: chr12_49665688_49666752
seq2: B6Ng01-298P08.g_68_1123 (reverse)

seq1  TTTCCTTCCCCATCATATTTGAACTATT-ATATATAGTAAGTAGTGTTGG  49
      |||| |||||||||||||    |||||| ||||||||| |||||||||||
seq2  TTTCTTTCCCCATCATAT---GACTATTAATATATAGT-AGTAGTGTTGG  46

seq1  TGTCCATTTACCCTCAAATAAATTGATACTTAAAATGGTTTTGCTCTATA  99
      ||| |||||| |||||||||||||||||||| |||||| |||||||||||
seq2  TGT-CATTTA-CCTCAAATAAATTGATACTT-AAATGG-TTTGCTCTATA  92

seq1  TTAACCTGCTATTT-AATTATCTGAGCAAATTAATCACTAGACAGTTACT  148
       |||| |||||||| |||| |||||||||| |||||||||||||||||||
seq2  -TAACTTGCTATTTAAATTTTCTGAGCAAA-TAATCACTAGACAGTTACT  140

seq1  ATAGCAAATAGTACTCAACATAAAAAAATAGATTGGAACAGAAGTTGGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAATAGTACTCAACATAAAAAAATAGATTGGAACAGAAGTTGGGC  190

seq1  AGTAAGGTAGATCAGCAGAGCTATATATAATGCAGTTTCTCCTGAATATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGTAGATCAGCAGAGCTATATATAATGCAGTTTCTCCTGAATATT  240

seq1  GCAAACATATCCACTAAATGAAGACAAGGAACCTGAATGAAAAACAATGT  298
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCAAACATATCCACTAAATGAAGACAAGGAA-CTGAATGAAAAACAATGT  289

seq1  AGCAAGAACAAAAATCTTGATCATCAGTGTAACTAACCCCAGATCTTCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAACAAAAATCTTGATCATCAGTGTAACTAACCCCAGATCTTCAG  339

seq1  AACCGAAACCTAAAATCAAGTAGTATATGGAAATTAAAACAATTTGTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAAACCTAAAATCAAGTAGTATATGGAAATTAAAACAATTTGTCTC  389

seq1  CTCCAAAAATCATGAATACTATAGTAATGATCCCCAATCAAATGACTTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAAATCATGAATACTATAGTAATGATCCCCAATCAAATGACTTTC  439

seq1  CAGAGGTAAAGTAGCATAAAGAAGACTCAGGGGGTTTTTTGGTGTTTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTAAAGTAGCATAAAGAAGACTCAGGGGGTTTTTTGGTGTTTTTT  489

seq1  TTCCTGTGAGAATTATATCTGATAAAATTAAAAATATATAATATCAAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGAGAATTATATCTGATAAAATTAAAAATATATAATATCAAAAT  539

seq1  AGAGTGTAATTATGAGATAGAAATGCTAAAATAGAACAAACTGACTTGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTAATTATGAGATAGAAATGCTAAAATAGAACAAACTGACTTGAT  589

seq1  AATGGAAAAAAATATAGTAGATGAAATAAAAAGTTTAGTGAAAAGCCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAAAATATAGTAGATGAAATAAAAAGTTTAGTGAAAAGCCTCC  639

seq1  ATAGTAGAATGGATCACATGTAAGGCAAAGTATTAGGCTATGAAGAAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGAATGGATCACATGTAAGGCAAAGTATTAGGCTATGAAGAAGAA  689

seq1  ATTGAACTAGATAATCTTGGTAAATTTCAATGATAGTCTAAATGGATGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTAGATAATCTTGGTAAATTTCAATGATAGTCTAAATGGATGAG  739

seq1  TAGAATAGACAAGAACTTAGAGACTTCATTAAATGTTATTTAATAAGAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGACAAGAACTTAGAGACTTCATTAAATGTTATTTAATAAGAAG  789

seq1  TTATTTCCTATAAAGGGCATAGAAAATATTTTTAATAAAATCATATAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTATAAAGGGCATAGAAAATATTTTTAATAAAATCATATAAAA  839

seq1  TCCCCAAAATGGAGAAAAGGAATCCCATAGATATTCAAGAGGTAAGGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAATGGAGAAAAGGAATCCCATAGATATTCAAGAGGTAAGGAGA  889

seq1  ATAACAAACATATAGGAAGAGAAAAGAAACTCTAGAGGAAATTTTATAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAACATATAGGAAGAGAAAAGAAACTCTAGAGGAAATTTTATAGT  939

seq1  TAAAACATTAAATATATACAGGACAAAGAATATCTATGGAAATCTGAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTAAATATATACAGGACAAAGAATATCTATGGAAATCTGAAGT  989

seq1  ACATAAAGTCTGATTATCAAAATAATTATTAACTTTTGAGTTCAAACCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGTCTGATTATCAAAATAATTATTAACTTTTGAGTTCAAACCAT  1039

seq1  GAGAGCAAGAAGAATTC  1065
      |||||||||||||||||
seq2  GAGAGCAAGAAGAATTC  1056


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