BAC Information

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BAC

Clone NameB6Ng01-301P13
Chromosome12 (Build37)
Map Location 114,830,817 - 114,969,206
singlet/doubletdoublet
Overlap geneIgh, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6
Upstream gene2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3
Downstream geneIghv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301P13.bB6Ng01-301P13.g
ACCGA096147GA096148
length1,152896
definitionB6Ng01-301P13.b B6Ng01-301P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,968,078 - 114,969,206)(114,830,817 - 114,831,361)
sequence
gaattccaaaatgattcatggcttgtgaatccatcccaatctgatctcaa
tcttcaaacatgatcatgattacaagtaatttacatctaaagcatttgct
gggaattaaaaagacataagctaaactttaaaactctttctatttaatgg
gtcagaatagaatatgtggacggaagtctaaatgtgcatagaatatcatt
gttacaatgatggttcaaatacgcaccagtagcacaggtgatgcttaaca
tgaaaaaacctatgaccagagcccagatgttgatgttggctaaagagcct
agtgtctcacatttgatcaagcaaagtgttattcagaaagcagtgccggg
tttgggatccatcttaatgaatcagcaacatgaggaagatttggaagcca
gattgatgagattactagaatcctggatctgaacacacaacacacaatag
taagttgaacttctccacgcaatgctaaagataaagcatccagtatcatg
ttatacaggacccagcagaggatcagcctgtgggtgaaatacaatgaact
ggaagtctgttggaatatatatatatcagaaccaacatttaaattcctaa
ttcttaaggacttcacttttgaccaagaacatttgaaatgggttattgag
gtctgtggtggtttgaatatgcatggcctataggaagtggaagtatggcc
tttttgtagtatgtgtagcttgatggaggaagtacatcactatatggtgt
tgtgaaagttgagatcctatgttcaagttctgccaagaacagaagagagt
cccctcctggatatttgaaacacatgcagagacccaaagccaaacattgg
gtatatctcaggtctcttatggaagagttggctgaaggattgaaaggcct
taaaggggataggaacttcacagaaaaccaacaagattcatctaacctag
actctaggggtctttccaagagagagtcaccttacaaaaaaggacaacaa
tgggctaacctagtcccttgataacataatgtagcagatgtcagcttaga
ctccaatgtggatcccaaacaactgggagccaggtgcctgtcctaagtta
actgccttctctatatagaaaatacatccaaccataattggtttttctgg
cc
gaattccagtttgcaggagaaccattagatgaattattctaataactgat
ttttaaatatattttattaggtattttcctcatttacatttccaatgcta
tcccaaaagttccccataccatcccccccacttccctacccacccattcc
cactttttgaccctggcgttcccctgtactggggcatataaagtttgcaa
gtccaatgggcctctctttacagtgatggctgactaggccatcttttgat
acatatgcagctagagtcaagagctctggggtactggttagttcataatg
ttgttccagctatagggttgcaaaactctttagctgcttgggtactttct
ctagctcctccattgggggccctgtgatccatccaatagctgactgcgag
catccacttctgttgctaggccctggcatagtctcacaagagacacctat
atctgggttctttcagcaaaatcttgctagtgtatgcaatggtgtcatcg
tttggaagctgattatggggtggatccctggatatgacaggctctagatg
gtccatccttttgtctcagctccaaactttgtctctgtaactctttccat
gggtattttgttcccaattctaagaaggggcaaagtgtccacactttggt
cttcgttcttcttgagtttcatgcgtttagcaaattgtatcttatatctt
gggtattctaagtttctgggttaatatccacttatcagtgagtacatatt
gtgtgagttcctttgtgattgggttaccttactcaggatgatgccctcca
ggcccatccatttgcctaggaatttcataaattcattcttttttatagtt
gagtagtaatccattgtgtaaatgtaccacatttttctgtatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114968078_114969206
seq2: B6Ng01-301P13.b_60_1199 (reverse)

seq1  GGCCAGAAAAGACAATTATGTTGGGAAATGTATTC--TATAGAGAA-GCA  47
      ||||||||||  |||||||| | |||  | | |||  ||||||||| |||
seq2  GGCCAGAAAAACCAATTATGGTTGGATGTATTTTCTATATAGAGAAGGCA  50

seq1  GTAACTTTAGGGACA-GCACCT-GCT-CCAGTTGTTGGGGAATCCACA-T  93
      || |  ||| ||||| |||||| ||| ||||||||| ||| ||||||| |
seq2  GTTAACTTA-GGACAGGCACCTGGCTCCCAGTTGTTTGGG-ATCCACATT  98

seq1  GGAGTCTAAGCTGGACATCTGCTACA-TATG-TATCAGGGACCTAGGTTA  141
      |||||||||||| ||||||||||||| |||| ||||| ||  ||||||||
seq2  GGAGTCTAAGCT-GACATCTGCTACATTATGTTATCAAGGGACTAGGTTA  147

seq1  G-CCATTG-TGTCC-TTTTTGTAAGGTGA--CTCTCTTTGAAAGACCCCT  186
      | |||||| ||||| ||||||||||||||  ||||||| |||||||||||
seq2  GCCCATTGTTGTCCTTTTTTGTAAGGTGACTCTCTCTTGGAAAGACCCCT  197

seq1  AGAGTCTAGGTTAGATGAATC-TGTTGGTTTTCCTGTGAAGTTCCTATCC  235
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  AGAGTCTAGGTTAGATGAATCTTGTTGGTTTT-CTGTGAAGTTCCTATCC  246

seq1  CCTTTAAGGCC-TTCAATCCTTCAGCCAACTCTTCCATAAGAGACCCTGA  284
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  CCTTTAAGGCCTTTCAATCCTTCAGCCAACTCTTCCATAAGAGA-CCTGA  295

seq1  GATATACCCAATGTTTGGCTTTGGGTCTCTGCATGTGTTTCAAATATCCA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACCCAATGTTTGGCTTTGGGTCTCTGCATGTGTTTCAAATATCCA  345

seq1  GGAGGGGACTCTCTTCTGTTCTTGGCAGAACTTGAACATAGGATCTCAAC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGACTCTCTTCTGTTCTTGGCAGAACTTGAACATAGGATCTCAAC  395

seq1  TTTCACAACACCATATAGTGATGTACTTCCTCCATCAAGCTACACATACT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAACACCATATAGTGATGTACTTCCTCCATCAAGCTACACATACT  445

seq1  ACAAAAAGGCCATACTTCCACTTCCTATAGGCCATGCATATTCAAACCAC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGGCCATACTTCCACTTCCTATAGGCCATGCATATTCAAACCAC  495

seq1  CACAGACCTCAATAACCCATTTCAAATGTTCTTGGTCAAAAGTGAAGTCC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACCTCAATAACCCATTTCAAATGTTCTTGGTCAAAAGTGAAGTCC  545

seq1  TTAAGAATTAGGAATTTAAATGTTGGTTCTGATATATATATATTCCAACA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATTAGGAATTTAAATGTTGGTTCTGATATATATATATTCCAACA  595

seq1  GACTTCCAGTTCATTGTATTTCACCCACAGGCTGATCCTCTGCTGGGTCC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAGTTCATTGTATTTCACCCACAGGCTGATCCTCTGCTGGGTCC  645

seq1  TGTATAACATGATACTGGATGCTTTATCTTTAGCATTGCGTGGAGAAGTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACATGATACTGGATGCTTTATCTTTAGCATTGCGTGGAGAAGTT  695

seq1  CAACTTACTATTGTGTGTTGTGTGTTCAGATCCAGGATTCTAGTAATCTC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTACTATTGTGTGTTGTGTGTTCAGATCCAGGATTCTAGTAATCTC  745

seq1  ATCAATCTGGCTTCCAAATCTTCCTCATGTTGCTGATTCATTAAGATGGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTGGCTTCCAAATCTTCCTCATGTTGCTGATTCATTAAGATGGA  795

seq1  TCCCAAACCCGGCACTGCTTTCTGAATAACACTTTGCTTGATCAAATGTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACCCGGCACTGCTTTCTGAATAACACTTTGCTTGATCAAATGTG  845

seq1  AGACACTAGGCTCTTTAGCCAACATCAACATCTGGGCTCTGGTCATAGGT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTAGGCTCTTTAGCCAACATCAACATCTGGGCTCTGGTCATAGGT  895

seq1  TTTTTCATGTTAAGCATCACCTGTGCTACTGGTGCGTATTTGAACCATCA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATGTTAAGCATCACCTGTGCTACTGGTGCGTATTTGAACCATCA  945

seq1  TTGTAACAATGATATTCTATGCACATTTAGACTTCCGTCCACATATTCTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAATGATATTCTATGCACATTTAGACTTCCGTCCACATATTCTA  995

seq1  TTCTGACCCATTAAATAGAAAGAGTTTTAAAGTTTAGCTTATGTCTTTTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACCCATTAAATAGAAAGAGTTTTAAAGTTTAGCTTATGTCTTTTT  1045

seq1  AATTCCCAGCAAATGCTTTAGATGTAAATTACTTGTAATCATGATCATGT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAGCAAATGCTTTAGATGTAAATTACTTGTAATCATGATCATGT  1095

seq1  TTGAAGATTGAGATCAGATTGGGATGGATTCACAAGCCATGAATC  1129
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATTGAGATCAGATTGGGATGGATTCACAAGCCATGAATC  1140

seq1: chr12_114830817_114831361
seq2: B6Ng01-301P13.g_67_611

seq1  GAATTCCAGTTTGCAGGAGAACCATTAGATGAATTATTCTAATAACTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTGCAGGAGAACCATTAGATGAATTATTCTAATAACTGAT  50

seq1  TTTTAAATATATTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATATTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTA  100

seq1  TCCCAAAAGTTCCCCATACCATCCCCCCCACTTCCCTACCCACCCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAGTTCCCCATACCATCCCCCCCACTTCCCTACCCACCCATTCC  150

seq1  CACTTTTTGACCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTGACCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAA  200

seq1  GTCCAATGGGCCTCTCTTTACAGTGATGGCTGACTAGGCCATCTTTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATGGGCCTCTCTTTACAGTGATGGCTGACTAGGCCATCTTTTGAT  250

seq1  ACATATGCAGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCAGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATG  300

seq1  TTGTTCCAGCTATAGGGTTGCAAAACTCTTTAGCTGCTTGGGTACTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCAGCTATAGGGTTGCAAAACTCTTTAGCTGCTTGGGTACTTTCT  350

seq1  CTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGCGAG  400

seq1  CATCCACTTCTGTTGCTAGGCCCTGGCATAGTCTCACAAGAGACACCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTTCTGTTGCTAGGCCCTGGCATAGTCTCACAAGAGACACCTAT  450

seq1  ATCTGGGTTCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTTCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCATCG  500

seq1  TTTGGAAGCTGATTATGGGGTGGATCCCTGGATATGACAGGCTCT  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGCTGATTATGGGGTGGATCCCTGGATATGACAGGCTCT  545