BAC Information

Click to search

BAC

Clone NameB6Ng01-302K10
Chromosome12 (Build37)
Map Location 85,671,743 - 85,815,341
singlet/doubletdoublet
Overlap geneZfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1
Downstream geneChx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302K10.bB6Ng01-302K10.g
ACCGA096646GA096647
length1,0961,072
definitionB6Ng01-302K10.b B6Ng01-302K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,814,243 - 85,815,341)(85,671,743 - 85,672,812)
sequence
gaattcaagttacaggtgagttgccatgtatgtgggtgctgggaacttgg
tcctccccaagaacagcaagtgctctcaacagcggaggcatttctccagc
ccactttgggttattactgagacagctgtcttgcagtcttccttccttct
acagtgctggaatgacaagggtgtgtgccacaaaagacaccaaccaaatc
atctcttgcccttgacctaacagttttacactcctttctctcccagactt
gtacttctgcaagaacgtgccaaagttggaaaaaaaccctagcatttact
ttttaacctcagtctttactgtgaaagctgaccaattgtttttaattggc
aaaatgactcttatttagaaacagtatattaaagaattaaaaaattctca
ggaaaacagggaatgaatcttttaaataacttccattatttttaaaatgg
tatctcaatttccctaatttttattagtattttccctaaataatataaag
tcagttgtaatagaaattaactatatttgtatttccttcctgacagttac
ctatgttcctactctcaaaactaaaaataaaactgctgattttatgtttt
cttttttaaaaatatatttatttatttattgggcaaggtgtggtatcaca
cttttaacctcagctcttgggacagagcatgaggttctctgtgagttcaa
ggccagctcatggtctgcatagggagttccaggtcagttacggctacata
aaggccctgttcaaaattgtacgtacagccgggtgtggtggcgcacgcct
ttaatcccagcacttgggaggcagaggcaggcggatttctgagtttgtag
gccagcctgatctacaaagtgagttccaggacagccagggctacacagag
aaaccctgtctcgaaaaatcataaaataaaaaaaaaataattgtacgtac
gcgcgcacacaacacacacatgtataggcatacttgtattattgttttgt
atatgtgcacatgaattgacattcctgcatatatggagtcagagggttcc
cttcttatcttatactgggtggtccaggaactaacctaaggttatc
gaattcttggttcttttgcctctacctctcattaccttattcctgagaaa
tacttaaataagacattttgcacctaaatatcttttttttttttttaaga
tttatttatttatttatttatttatttatttatttattacatgtaagtac
attgtagctgtcttcagaccctccagaagagggagtcagatctcattacg
gatggttgtgagccaccatgtggttgctgggatttgaacttcggaccttc
ggaagagcagtcgggtgctcttacccactgagccatctcaccagcccccc
taaatatcttaaagaataaaaattctcaagtctcattacaaaataatttg
agaacttaatagtaaagagatgaattagctgttaagagcattggatgctg
tctcagagaacacaagtttgattcccagcacccagaaagcagttcacaga
cagtgcaggcaaaacacccatacacataaaaataaataaaaaataacaac
agccagacagtggtggtgcacacgagtgaggcagaagcaggtagatctct
gagtttgaagtcagcttggtctacaaaacaagttccgggactatagggag
aaactctgtctcagaaaacttaaaaaaaaaaaatctaacaacaatattgg
catatcttcctagggcatcaccttaaaactgtgttgcagctgggattcgg
cttatagtttgaacaaaccaggttattttgacatatcccaatttggaatg
tattatctaccttgaaagtcagtagagatgttgggttgtcaccaccagca
caaagctttctcaggtattggtgcttgtgattgtctttacagaaatgagc
gctcctttcatctgccctgcagaaggttgtgggaaaagctttttaatgtg
ctgcagaggctgaagtgcacatgaggacacacaatggggagaaacccttt
attgtgccacgagtctgggtgtggttaagcaggttcactacagctgggaa
cctgaagaacaacggcgcatcacacacagtgtgcgacgctcggctctcgc
tcgcctgtacctaggaaggcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85814243_85815341
seq2: B6Ng01-302K10.b_47_1142 (reverse)

seq1  GATAACCTAAGTTTGGTCCCTGGAACCCACACAGTATAAGATAAGAAAGT  50
      |||||||| || || || ||||||  |||| |||||||||||||||| | 
seq2  GATAACCTTAGGTTAGTTCCTGGA--CCACCCAGTATAAGATAAGAAGGG  48

seq1  GACCCTCTGACCTCCATATATGCAGG-ATGTC-ATTCATGTGCACATATA  98
       ||||||||| ||||||||||||||| ||||| |||||||||||||||||
seq2  AACCCTCTGA-CTCCATATATGCAGGAATGTCAATTCATGTGCACATATA  97

seq1  CAAAACATAAATACAAGTATGCCTATACATGTGTGTG-TGTGTGCGCGCG  147
      |||||||  |||||||||||||||||||||||||||| ||||||||||||
seq2  CAAAACAATAATACAAGTATGCCTATACATGTGTGTGTTGTGTGCGCGCG  147

seq1  TACGTACAATTTTTTTTTTTTTTTTTTTTTTTGATTTTTCGAGACAGGGT  197
      |||||||||   || |||||||||| |||| |||||||||||||||||||
seq2  TACGTACAA---TTATTTTTTTTTTATTTTATGATTTTTCGAGACAGGGT  194

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGCTG  244

seq1  GCCTACAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATT  294

seq1  AAAGGCGTGCGCCACCACACCCGGCTGTACGTACAATTTTGAACAGGGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTGCGCCACCACACCCGGCTGTACGTACAATTTTGAACAGGGCC  344

seq1  TTTATGTAGCCGTAACTGACCTGGAACTCCCTATGCAGACCATGAGCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAGCCGTAACTGACCTGGAACTCCCTATGCAGACCATGAGCTGG  394

seq1  CCTTGAACTCACAGAGAACCTCATGCTCTGTCCCAAGAGCTGAGGTTAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCACAGAGAACCTCATGCTCTGTCCCAAGAGCTGAGGTTAAA  444

seq1  AGTGTGATACCACACCTTGCCCAATAAATAAATAAATATATTTTTAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATACCACACCTTGCCCAATAAATAAATAAATATATTTTTAAAAA  494

seq1  AGAAAACATAAAATCAGCAGTTTTATTTTTAGTTTTGAGAGTAGGAACAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACATAAAATCAGCAGTTTTATTTTTAGTTTTGAGAGTAGGAACAT  544

seq1  AGGTAACTGTCAGGAAGGAAATACAAATATAGTTAATTTCTATTACAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACTGTCAGGAAGGAAATACAAATATAGTTAATTTCTATTACAACT  594

seq1  GACTTTATATTATTTAGGGAAAATACTAATAAAAATTAGGGAAATTGAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATATTATTTAGGGAAAATACTAATAAAAATTAGGGAAATTGAGA  644

seq1  TACCATTTTAAAAATAATGGAAGTTATTTAAAAGATTCATTCCCTGTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTTAAAAATAATGGAAGTTATTTAAAAGATTCATTCCCTGTTTT  694

seq1  CCTGAGAATTTTTTAATTCTTTAATATACTGTTTCTAAATAAGAGTCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAATTTTTTAATTCTTTAATATACTGTTTCTAAATAAGAGTCATT  744

seq1  TTGCCAATTAAAAACAATTGGTCAGCTTTCACAGTAAAGACTGAGGTTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAATTAAAAACAATTGGTCAGCTTTCACAGTAAAGACTGAGGTTAA  794

seq1  AAAGTAAATGCTAGGGTTTTTTTCCAACTTTGGCACGTTCTTGCAGAAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATGCTAGGGTTTTTTTCCAACTTTGGCACGTTCTTGCAGAAGT  844

seq1  ACAAGTCTGGGAGAGAAAGGAGTGTAAAACTGTTAGGTCAAGGGCAAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCTGGGAGAGAAAGGAGTGTAAAACTGTTAGGTCAAGGGCAAGAG  894

seq1  ATGATTTGGTTGGTGTCTTTTGTGGCACACACCCTTGTCATTCCAGCACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGGTTGGTGTCTTTTGTGGCACACACCCTTGTCATTCCAGCACT  944

seq1  GTAGAAGGAAGGAAGACTGCAAGACAGCTGTCTCAGTAATAACCCAAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGAAGGAAGACTGCAAGACAGCTGTCTCAGTAATAACCCAAAGT  994

seq1  GGGCTGGAGAAATGCCTCCGCTGTTGAGAGCACTTGCTGTTCTTGGGGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGAAATGCCTCCGCTGTTGAGAGCACTTGCTGTTCTTGGGGAG  1044

seq1  GACCAAGTTCCCAGCACCCACATACATGGCAACTCACCTGTAACTTGAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTTCCCAGCACCCACATACATGGCAACTCACCTGTAACTTGAAT  1094

seq1  TC  1099
      ||
seq2  TC  1096

seq1: chr12_85671743_85672812
seq2: B6Ng01-302K10.g_69_1140

seq1  GAATTCTTGGTTCTTTTGCCTCTACCTCTCATTACCTTATTCCTGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTCTTTTGCCTCTACCTCTCATTACCTTATTCCTGAGAAA  50

seq1  TACTTAAATAAGACATTTTGCACCTAAATATCTTTTTTTTTTTTTTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAATAAGACATTTTGCACCTAAATATCTTTTTTTTTTTTTTAAGA  100

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTACATGTAAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTACATGTAAGTAC  150

seq1  ATTGTAGCTGTCTTCAGACCCTCCAGAAGAGGGAGTCAGATCTCATTACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGCTGTCTTCAGACCCTCCAGAAGAGGGAGTCAGATCTCATTACG  200

seq1  GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTC  250

seq1  GGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCCC  300

seq1  TAAATATCTTAAAGAATAAAAATTCTCAAGTCTCATTACAAAATAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCTTAAAGAATAAAAATTCTCAAGTCTCATTACAAAATAATTTG  350

seq1  AGAACTTAATAGTAAAGAGATGAATTAGCTGTTAAGAGCATTGGATGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTAATAGTAAAGAGATGAATTAGCTGTTAAGAGCATTGGATGCTG  400

seq1  TCTCAGAGAACACAAGTTTGATTCCCAGCACCCAGAAAGCAGTTCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGAACACAAGTTTGATTCCCAGCACCCAGAAAGCAGTTCACAGA  450

seq1  CAGTGCAGGCAAAACACCCATACACATAAAAATAAATAAAAAATAACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGGCAAAACACCCATACACATAAAAATAAATAAAAAATAACAAC  500

seq1  AGCCAGACAGTGGTGGTGCACACGAGTGAGGCAGAAGCAGGTAGATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACAGTGGTGGTGCACACGAGTGAGGCAGAAGCAGGTAGATCTCT  550

seq1  GAGTTTGAAGTCAGCTTGGTCTACAAAACAAGTTCCGGGACTATAGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAAGTCAGCTTGGTCTACAAAACAAGTTCCGGGACTATAGGGAG  600

seq1  AAACTCTGTCTCAGAAAACTTAAAAAAAAAAAATCTAACAACAATATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGTCTCAGAAAACTTAAAAAAAAAAAATCTAACAACAATATTGG  650

seq1  CATATCTTCCTAGGGCATCACCTTAAAACTGTGTTGCAGCTGGGATTCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTCCTAGGGCATCACCTTAAAACTGTGTTGCAGCTGGGATTCGG  700

seq1  CTTATAGTTTGAACAAACCAGGTTATTTTGACATATCCCAATTTGGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTTTGAACAAACCAGGTTATTTTGACATATCCCAATTTGGAATG  750

seq1  TATTATCTACCTTGAAAGTCAGTAGAGATGTTGGGTTGTCACCACCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTACCTTGAAAGTCAGTAGAGATGTTGGGTTGTCACCACCAGCA  800

seq1  CAAAGCTTTCTCAGGTATTGGTGCTTGTGATTGTCTTTACAGAAATGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTTCTCAGGTATTGGTGCTTGTGATTGTCTTTACAGAAATGAGC  850

seq1  GCTCC-TTCATCTGCCCTGCAGAAGGTTGTGGGAAAAGCTTTT--ATGTG  897
      ||||| |||||||||||||||||||||||||||||||||||||  |||||
seq2  GCTCCTTTCATCTGCCCTGCAGAAGGTTGTGGGAAAAGCTTTTTAATGTG  900

seq1  CTGCAGAGGCTGAAGGTGCACATGAGGACACACAATGGGGAGAAACCCTT  947
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGCTGAA-GTGCACATGAGGACACACAATGGGGAGAAACCCTT  949

seq1  TA-TGTGCCACGAGTCTGGGTGTGG-TAAGCA-GTTCACTACAGCTGGGA  994
      || |||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TATTGTGCCACGAGTCTGGGTGTGGTTAAGCAGGTTCACTACAGCTGGGA  999

seq1  ACCTGAAGAACCACCGGCGCATC-CACACAGGTGTGCGGCCGCTC-GCTC  1042
      |||||||||| || ||||||||| |||||| |||||| | ||||| ||||
seq2  ACCTGAAGAA-CAACGGCGCATCACACACA-GTGTGC-GACGCTCGGCTC  1046

seq1  TCCGCTCGCCTGTACTTAGGAAAGGCAC  1070
      | ||||||||||||| |||| |||||||
seq2  T-CGCTCGCCTGTACCTAGG-AAGGCAC  1072