BAC Information

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BAC

Clone NameB6Ng01-303A21
Chromosome12 (Build37)
Map Location 93,412,918 - 93,516,223
singlet/doubletdoublet
Overlap geneLOC100039425, LOC628116
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303A21.bB6Ng01-303A21.g
ACCGA096948GA096949
length1,1141,091
definitionB6Ng01-303A21.b B6Ng01-303A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,515,101 - 93,516,223)(93,412,918 - 93,414,000)
sequence
gaattcacactgtacaaaatattggaccaaagtgaaattcacctaataag
caactgcttgactggccagcacagctggatctacttagctaatgaagaga
aagcttcagggtgtatgacttacgaaatcttcctccttaaccctgggagg
agcctcacaatgcagccaacgtagtatgtgattgcaattttttccaaaag
gagaaatttaatcgccattaattaaaactgtgtcttctctctgctacttc
cactattggaacttagtagttgttaacgaagtttgtatgttttacaattt
gactaagcagaagttcattgaagaatgtgttgagctttgctttatgtact
atttatggctctcggtaactcctgcctattataacccatagccagcagga
acctcttgccaccagcagtgcaaactttgcagatgcaaaggtgatagact
aaagcattataaatggaatcaaggtcttgtgtccctgaataagaatatag
atgtggatagtcacagaagaagaccaaatttattaagagaaagaagaaac
actctcaaaattcaaagtggcccagaactggagaaaacccaaagcccagt
ggtgctcagcagatgggacatttgaacagagagcatttacttattctctg
catagcattatatgccagccttgaagggaagggacttcaaggctgattta
ttagtagtagtattatcatcattattttatgtgtatatgctaacgcactt
gagtgcaggtgtcctcctaggccagggggatcagatgtccttggaactag
agtggttgtaagcctgagagctaccagatgtggatgttgaactaaaccca
tgtcctctgcaaaagtacactattgtaagcattggttagcatctttagct
ttttacatgttaagccttagacatccctctgtggcttcctttcctgcctc
aaaaatgatattacaaggtatttcagctattgtcatctcactgggtcttg
gaggctcttgcttttctggcatctggagtttctggtttctaccccaagtt
cccatccccatgctacacacctctgaataattcctgacctctgtacatct
cctccatacctgat
gaattcagtgactccttgctatacaggatgctctacctaggacacaatat
aaaataccaagagggaggcagctatgaatcatccaagctgacattgattt
ccagtttgttatgtgtcagacacaggactgagcatattgcaagcaggatc
tcactttattctcaaaacagttttgaggggacagaacaattattatcccc
actaaactgatgaagataattaagcctagtgacaataacttgcctaagga
cacactagaaatggcagatctgaggcctgatgcagaagccaattccctta
accaatgcacagttttggtctttaatgagtgaacctagtaatctaattgt
tccacttttattctcataaaggcaataagacacataaatactgaatttat
aagacaaaatgggataaatggtgcacaaaaggaatgagatcatcggcatt
aatggagaatgcaatctagacaggatttaagccccaataattagcataca
atatgagcacctactgagtgtgtactttcagtcaactgttcttcctccac
ctatttacccattcataaaatattcactgagtagcagctactcttatact
tttcccagtatgtagggccactaaaaaataaaataaaataaaatagataa
atataccagccttttggaatcttgcattctagaagagtcagagaagcagg
aaggaaaaaaaaaattatcgatatgtactttgtacacaaagcacacatgt
tcacacggttttttttttctttttaaaggcatggaatgtactataaataa
aagaataaaacttgaaaggtgcaataggtaattaaatgcagcaaccttga
gttaggattgactgaaccttttcatttgaatctactctacagtatctgag
ttcttaggaggtgcctgctattttcagtgtcctctttttttacaggaaaa
ctaatttagagtgactagctactttgttctagaagtaatggagtctcctc
tgacaataggagttttcttaggaaattgttttctgatgcagatgtgacta
agtcctagaattatattaattccacagccaataataaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93515101_93516223
seq2: B6Ng01-303A21.b_46_1159 (reverse)

seq1  ATCAGGTATGGGAGGAGATGTACAGAGGGTCAAGAAATTAATCAGAGGTG  50
      ||||||||| |||||||||||||||| |||| || ||||| |||||||||
seq2  ATCAGGTAT-GGAGGAGATGTACAGA-GGTC-AGGAATTATTCAGAGGTG  47

seq1  TGTAGCAATGGGGGATGGGGAACTGGGGGTAGAAACCAGAAACTCCCAGA  100
      |||||||   |||||| ||||||| ||||||||||||||||||| |||||
seq2  TGTAGCA--TGGGGAT-GGGAACTTGGGGTAGAAACCAGAAACT-CCAGA  93

seq1  TGCCAGAAAAGCAAGAGCCTCCAAGGACCCAGTGGAGATGACAATAGCTG  150
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  TGCCAGAAAAGCAAGAGCCTCCAA-GACCCAGT-GAGATGACAATAGCTG  141

seq1  AAATACCTTGTAATATCATTTTTGAGGCAGGAAAGGAAGCCACAGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTTGTAATATCATTTTTGAGGCAGGAAAGGAAGCCACAGAGGGA  191

seq1  TGTCTAAGGCTTAACATGTAAAAAGCTAAAGATGCTAACCAATGCTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAGGCTTAACATGTAAAAAGCTAAAGATGCTAACCAATGCTTACA  241

seq1  ATAGTGTACTTTTGCAGAGGACATGGGTTTAGTTCAACATCCACATCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTACTTTTGCAGAGGACATGGGTTTAGTTCAACATCCACATCTGG  291

seq1  TAGCTCTCAGGCTTACAACCACTCTAGTTCCAAGGACATCTGATCCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCAGGCTTACAACCACTCTAGTTCCAAGGACATCTGATCCCCCT  341

seq1  GGCCTAGGAGGACACCTGCACTCAAGTGCGTTAGCATATACACATAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGGAGGACACCTGCACTCAAGTGCGTTAGCATATACACATAAAAT  391

seq1  AATGATGATAATACTACTACTAATAAATCAGCCTTGAAGTCCCTTCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGATAATACTACTACTAATAAATCAGCCTTGAAGTCCCTTCCCTT  441

seq1  CAAGGCTGGCATATAATGCTATGCAGAGAATAAGTAAATGCTCTCTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGCATATAATGCTATGCAGAGAATAAGTAAATGCTCTCTGTTC  491

seq1  AAATGTCCCATCTGCTGAGCACCACTGGGCTTTGGGTTTTCTCCAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCCATCTGCTGAGCACCACTGGGCTTTGGGTTTTCTCCAGTTCT  541

seq1  GGGCCACTTTGAATTTTGAGAGTGTTTCTTCTTTCTCTTAATAAATTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACTTTGAATTTTGAGAGTGTTTCTTCTTTCTCTTAATAAATTTGG  591

seq1  TCTTCTTCTGTGACTATCCACATCTATATTCTTATTCAGGGACACAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTGTGACTATCCACATCTATATTCTTATTCAGGGACACAAGAC  641

seq1  CTTGATTCCATTTATAATGCTTTAGTCTATCACCTTTGCATCTGCAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTCCATTTATAATGCTTTAGTCTATCACCTTTGCATCTGCAAAGT  691

seq1  TTGCACTGCTGGTGGCAAGAGGTTCCTGCTGGCTATGGGTTATAATAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGCTGGTGGCAAGAGGTTCCTGCTGGCTATGGGTTATAATAGGC  741

seq1  AGGAGTTACCGAGAGCCATAAATAGTACATAAAGCAAAGCTCAACACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTACCGAGAGCCATAAATAGTACATAAAGCAAAGCTCAACACATT  791

seq1  CTTCAATGAACTTCTGCTTAGTCAAATTGTAAAACATACAAACTTCGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGAACTTCTGCTTAGTCAAATTGTAAAACATACAAACTTCGTTA  841

seq1  ACAACTACTAAGTTCCAATAGTGGAAGTAGCAGAGAGAAGACACAGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTACTAAGTTCCAATAGTGGAAGTAGCAGAGAGAAGACACAGTTTT  891

seq1  AATTAATGGCGATTAAATTTCTCCTTTTGGAAAAAATTGCAATCACATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGGCGATTAAATTTCTCCTTTTGGAAAAAATTGCAATCACATAC  941

seq1  TACGTTGGCTGCATTGTGAGGCTCCTCCCAGGGTTAAGGAGGAAGATTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTGGCTGCATTGTGAGGCTCCTCCCAGGGTTAAGGAGGAAGATTTC  991

seq1  GTAAGTCATACACCCTGAAGCTTTCTCTTCATTAGCTAAGTAGATCCAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCATACACCCTGAAGCTTTCTCTTCATTAGCTAAGTAGATCCAGC  1041

seq1  TGTGCTGGCCAGTCAAGCAGTTGCTTATTAGGTGAATTTCACTTTGGTCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGGCCAGTCAAGCAGTTGCTTATTAGGTGAATTTCACTTTGGTCC  1091

seq1  AATATTTTGTACAGTGTGAATTC  1123
      |||||||||||||||||||||||
seq2  AATATTTTGTACAGTGTGAATTC  1114

seq1: chr12_93412918_93414000
seq2: B6Ng01-303A21.g_65_1155

seq1  GAATTCAGTGACTCCTTGCTATACAGGATGCTCTACCTAGGACACAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGACTCCTTGCTATACAGGATGCTCTACCTAGGACACAATAT  50

seq1  AAAATACCAAGAGGGAGGCAGCTATGAATCATCCAAGCTGACATTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCAAGAGGGAGGCAGCTATGAATCATCCAAGCTGACATTGATTT  100

seq1  CCAGTTTGTTATGTGTCAGACACAGGACTGAGCATATTGCAAGCAGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGTTATGTGTCAGACACAGGACTGAGCATATTGCAAGCAGGATC  150

seq1  TCACTTTATTCTCAAAACAGTTTTGAGGGGACAGAACAATTATTATCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTATTCTCAAAACAGTTTTGAGGGGACAGAACAATTATTATCCCC  200

seq1  ACTAAACTGATGAAGATAATTAAGCCTAGTGACAATAACTTGCCTAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTGATGAAGATAATTAAGCCTAGTGACAATAACTTGCCTAAGGA  250

seq1  CACACTAGAAATGGCAGATCTGAGGCCTGATGCAGAAGCCAATTCCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGAAATGGCAGATCTGAGGCCTGATGCAGAAGCCAATTCCCTTA  300

seq1  ACCAATGCACAGTTTTGGTCTTTAATGAGTGAACCTAGTAATCTAATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCACAGTTTTGGTCTTTAATGAGTGAACCTAGTAATCTAATTGT  350

seq1  TCCACTTTTATTCTCATAAAGGCAATAAGACACATAAATACTGAATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTTATTCTCATAAAGGCAATAAGACACATAAATACTGAATTTAT  400

seq1  AAGACAAAATGGGATAAATGGTGCACAAAAGGAATGAGATCATCGGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAATGGGATAAATGGTGCACAAAAGGAATGAGATCATCGGCATT  450

seq1  AATGGAGAATGCAATCTAGACAGGATTTAAGCCCCAATAATTAGCATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAATGCAATCTAGACAGGATTTAAGCCCCAATAATTAGCATACA  500

seq1  ATATGAGCACCTACTGAGTGTGTACTTTCAGTCAACTGTTCTTCCTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGCACCTACTGAGTGTGTACTTTCAGTCAACTGTTCTTCCTCCAC  550

seq1  CTATTTACCCATTCATAAAATATTCACTGAGTAGCAGCTACTCTTATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACCCATTCATAAAATATTCACTGAGTAGCAGCTACTCTTATACT  600

seq1  TTTCCCAGTATGTAGGGCCACTAAAAAATAAAATAAAATAAAATAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTATGTAGGGCCACTAAAAAATAAAATAAAATAAAATAGATAA  650

seq1  ATATACCAGCCTTTTGGAATCTTGCATTCTAGAAGAGTCAGAGAAGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCAGCCTTTTGGAATCTTGCATTCTAGAAGAGTCAGAGAAGCAGG  700

seq1  AAGG-AAAAAAAAATTATCGATATGTACTTTGTACACAAAGCACACATGT  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAAAAATTATCGATATGTACTTTGTACACAAAGCACACATGT  750

seq1  TCACACGG-TTTTTTTTTCTTTTTAAAGGCATGGAATGTACTATAAATAA  798
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCACACGGTTTTTTTTTTCTTTTTAAAGGCATGGAATGTACTATAAATAA  800

seq1  AAGAATAAAACTTGAAAGGTGCAATAGGTAATTAAATGCAGCAACCTTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAACTTGAAAGGTGCAATAGGTAATTAAATGCAGCAACCTTGA  850

seq1  GTTAGGATTGACTGAACCTTTTCATTTGAATCTACTCTACAGTATCTGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGATTGACTGAACCTTTTCATTTGAATCTACTCTACAGTATCTGAG  900

seq1  TTCTTAGGAGGTGCCTGCTA-TTTCAGTGTCCTC-TTTTTTACAGGAAAA  946
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  TTCTTAGGAGGTGCCTGCTATTTTCAGTGTCCTCTTTTTTTACAGGAAAA  950

seq1  CTAATTTAGAGTGACTAGCTACTTTGTTCTAGAAGGTAATGGAGTCTTCC  996
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  CTAATTTAGAGTGACTAGCTACTTTGTTCTAGAA-GTAATGGAGTC-TCC  998

seq1  TCTGACAATAGGAG-TTTCTTAGG-AATTG-TTTCTGATGCAGATGTGAC  1043
      |||||||||||||| ||||||||| ||||| |||||||||||||||||||
seq2  TCTGACAATAGGAGTTTTCTTAGGAAATTGTTTTCTGATGCAGATGTGAC  1048

seq1  TAAGTCCTAGAATTATATTA--TTCACAGCCAAT-ATAAAAAA  1083
      ||||||||||||||||||||  | |||||||||| ||||||||
seq2  TAAGTCCTAGAATTATATTAATTCCACAGCCAATAATAAAAAA  1091