BAC Information

Click to search

BAC

Clone NameB6Ng01-303B12
Chromosome12 (Build37)
Map Location 12,044,364 - 12,173,512
singlet/doubletdoublet
Overlap genenone
Upstream geneKcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
Downstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303B12.bB6Ng01-303B12.g
ACCGA096978GA096979
length1,165488
definitionB6Ng01-303B12.b B6Ng01-303B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,044,364 - 12,045,531)(12,173,019 - 12,173,512)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgcatggccccaaatctaaaaggagct
tttcacatcaaagatttacacagaactttacagtttatagcatattttta
tgaaggtgtcagcttgactcgtttgaaccataaatctgccagataaatgt
tttacccaaattctgcacattaaaaatgaagttcggcaacattgactgac
tcttgttggatttcagagttttaaaatgaagagaagatctgaagacagac
aatgcaatttcaagctttgtgcactctttatcatttgccccttttttctg
acaacaatgggcaattcagtgtcatctaccaaatgcttactgaaccaata
tcactttctgtaatctaagctacacactgaggaagaaaaagaaacatact
agtagtaaggaagccatagcaagagacctatgtttgactctgatgtgtcc
tgtcacagattcatggtgctgaaggaaaaggaaaaggtggtgaggagaga
aaggaaggagggggtatttcactggttcataaggaaagagaacgtgaatg
agaaagccttcagggagtagcatggtggagacaagccttgtgctgagtaa
gatcttgaggtgaacatgtgagttattaaaattcgatagattgtaaagca
tgagggatgcaatatcaaaatgtaagcttgcatcaagaaaacaatttcac
tatttttgagtgcaagaactgttgaacatttctctagaagtatccatggc
ataattggtttcaaactgactttattcaattagaataaacgtttaatatt
tcttatgtgattgtaccatatataattactgaatctaatttaaaatgtct
taacatactcacaggtgacagatactttactggagcacaaacaacttttt
caggcagctacatcacaaatgagtgacactcttcccaaccacccatagtt
ggcaattatgtaactgattggatactctggacaccacaaaaactgtgctc
caggaaaattcagaa

tttgagtgatttggtattacaaaactaaaatataactaatgtattaggta
tatttctaaatgctgataataaaaccaatgaacactgtgatctttttgta
tatacttatgtatatttatgcatgtacatgtatgtgtatgtatgtatgta
tgtatgtatgtatgtatgtatgtgtgtgtaaaaaggtcatacaaggaata
taaagacatagccatagaaacaaacatgcccatttgcatgtgtacctgga
aacatatgtgcactatgagaaagccttgataggcacttgcagggaatgag
ataagcttatatgttaagactgtttcctcttttagcctttcctcctcaca
cagacctactaggatcatacactatgaaggaacacaagggtcagatatat
aagaaattcagggtaatctttctttccttcctctctggtaaaatgtattt
atgaatcacttagtgattctgctttcttgttgtttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12044364_12045531
seq2: B6Ng01-303B12.b_44_1208

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50

seq1  TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC  100

seq1  TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT  150

seq1  TTTGTCTTATTGACGGTGTCTTTTGCATGGCCCCAAATCTAAAAGGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTGACGGTGTCTTTTGCATGGCCCCAAATCTAAAAGGAGCT  200

seq1  TTTCACATCAAAGATTTACACAGAACTTTACAGTTTATAGCATATTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCAAAGATTTACACAGAACTTTACAGTTTATAGCATATTTTTA  250

seq1  TGAAGGTGTCAGCTTGACTCGTTTGAACCATAAATCTGCCAGATAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGTCAGCTTGACTCGTTTGAACCATAAATCTGCCAGATAAATGT  300

seq1  TTTACCCAAATTCTGCACATTAAAAATGAAGTTCGGCAACATTGACTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCAAATTCTGCACATTAAAAATGAAGTTCGGCAACATTGACTGAC  350

seq1  TCTTGTTGGATTTCAGAGTTTTAAAATGAAGAGAAGATCTGAAGACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGGATTTCAGAGTTTTAAAATGAAGAGAAGATCTGAAGACAGAC  400

seq1  AATGCAATTTCAAGCTTTGTGCACTCTTTATCATTTGCCCCTTTTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATTTCAAGCTTTGTGCACTCTTTATCATTTGCCCCTTTTTTCTG  450

seq1  ACAACAATGGGCAATTCAGTGTCATCTACCAAATGCTTACTGAACCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATGGGCAATTCAGTGTCATCTACCAAATGCTTACTGAACCAATA  500

seq1  TCACTTTCTGTAATCTAAGCTACACACTGAGGAAGAAAAAGAAACATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTGTAATCTAAGCTACACACTGAGGAAGAAAAAGAAACATACT  550

seq1  AGTAGTAAGGAAGCCATAGCAAGAGACCTATGTTTGACTCTGATGTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAAGGAAGCCATAGCAAGAGACCTATGTTTGACTCTGATGTGTCC  600

seq1  TGTCACAGATTCATGGTGCTGAAGGAAAAGGAAAAGGTGGTGAGGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGATTCATGGTGCTGAAGGAAAAGGAAAAGGTGGTGAGGAGAGA  650

seq1  AAGGAAGGAGGGGGTATTTCACTGGTTCATAAGGAAAGAGAACGTGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAGGGGGTATTTCACTGGTTCATAAGGAAAGAGAACGTGAATG  700

seq1  AGAAAGCCTTCAGGGAGTAGCATGGTGGAGACAAGCCTTGTGCTGAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCTTCAGGGAGTAGCATGGTGGAGACAAGCCTTGTGCTGAGTAA  750

seq1  GATCTTGAGGTGAACATGTGAGTTATTAAAATTCGATAGATTGTAAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAGGTGAACATGTGAGTTATTAAAATTCGATAGATTGTAAAGCA  800

seq1  TGAGGGATGCAATATCAAAATGTAAGCTTGCATCAAGAAAACAATTTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATGCAATATCAAAATGTAAGCTTGCATCAAGAAAACAATTTCAC  850

seq1  TATTTTTGAGTGCAAGAACTGTTGAACATTTCTCTAGAAGTATCCATGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGAGTGCAAGAACTGTTGAACATTTCTCTAGAAGTATCCATGGC  900

seq1  ATAAATTGGTTTCAAACTGACTTTTATTCAATTAGAATAAACGTTTAAAT  950
      || |||||||||||||||||| |||||||||||||||||||||||| |||
seq2  AT-AATTGGTTTCAAACTGAC-TTTATTCAATTAGAATAAACGTTT-AAT  947

seq1  ATTTCTTATGTGATTGTACCATATATAATTACTGAATCTAA-TTAAAATG  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTTCTTATGTGATTGTACCATATATAATTACTGAATCTAATTTAAAATG  997

seq1  TCTT-ACATACTCACAGGTGACAGATTACTTACTGGAGCACAAACAAC-T  1047
      |||| |||||||||||||||||||||   ||||||||||||||||||| |
seq2  TCTTAACATACTCACAGGTGACAGATACTTTACTGGAGCACAAACAACTT  1047

seq1  TTTCA-GCAGCTACATCACCAATGAAGTGACACTCTTCCCCAACAACCAT  1096
      ||||| ||||||||||||| |||| |||||||||||| |||||| |||  
seq2  TTTCAGGCAGCTACATCACAAATG-AGTGACACTCTT-CCCAACCACCCA  1095

seq1  TAGTTGCCATTAATGTACTGGAATGGATACCTCCTGGACACCAC-AAAAC  1145
      |||||| || | |||||   || |||||||   ||||||||||| |||||
seq2  TAGTTGGCAATTATGTAACTGATTGGATAC--TCTGGACACCACAAAAAC  1143

seq1  TGTTGCCCCCAGGAAATTCAGAA  1168
      || ||| ||  | ||||||||||
seq2  TG-TGCTCCAGGAAAATTCAGAA  1165


seq1: chr12_12173019_12173512
seq2: B6Ng01-303B12.g_67_560 (reverse)

seq1  TCTCAACAACAAGAAAGCAGAATCACTAAGTGATTCATAAATACATTTTA  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAACAAGAAAGCAGAATCACTAAGTGATTCATAAATACATTTTA  50

seq1  CCAGAGAGGAAGGAATGACTGATTACCCTGAATTTCTTATATATCTGACC  100
      ||||||||||||||| ||  ||||||||||||||||||||||||||||||
seq2  CCAGAGAGGAAGGAAAGAAAGATTACCCTGAATTTCTTATATATCTGACC  100

seq1  CTTGTGTTCCTTCATAGTGTATGATCCTAGTAGGTCTGTGTGAGGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTCCTTCATAGTGTATGATCCTAGTAGGTCTGTGTGAGGAGGAA  150

seq1  AGGCTAAAAGAGGAAACAGTCTTAACATATATGCTTATCTCATTCCCTGC  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGCTAAAAGAGGAAACAGTCTTAACATATAAGCTTATCTCATTCCCTGC  200

seq1  AAGTGCCTATCAAGGCTTTCTCATAGTGCACATATGTTTCCAGGTACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTATCAAGGCTTTCTCATAGTGCACATATGTTTCCAGGTACACA  250

seq1  TGCAAATGGGCATGTTTGTTTCTATGGCTATGTCTTTATATTCCTTTTAT  300
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCAAATGGGCATGTTTGTTTCTATGGCTATGTCTTTATATTCCTTGTAT  300

seq1  GACCTTTTTACACACACATACATACATACATACATACATACATACATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTTTACACACACATACATACATACATACATACATACATACATACA  350

seq1  TACACATACATGTACATGCATAAATATACATAAGTATATACAAAAAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACATGTACATGCATAAATATACATAAGTATATACAAAAAGATC  400

seq1  ACAGTGTTCATTGGTTTTATTATCAGCATTTAGAAATATACCTAATACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTCATTGGTTTTATTATCAGCATTTAGAAATATACCTAATACAT  450

seq1  TAGTTATATTTTAGTTTTGTAATACCAAATCACTCAAAGAATTC  494
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATATTTTAGTTTTGTAATACCAAATCACTCAAAGAATTC  494


| Home | SequenceCutter | Blast | Download |