BAC Information

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BAC

Clone NameB6Ng01-303B20
Chromosome12 (Build37)
Map Location 93,627,066 - 93,725,784
singlet/doubletdoublet
Overlap genenone
Upstream geneTshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303B20.bB6Ng01-303B20.g
ACCGA096994GA096995
length1,1601,169
definitionB6Ng01-303B20.b B6Ng01-303B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,724,612 - 93,725,784)(93,627,066 - 93,628,222)
sequence
gaattccagtcagcctttctacttttagtggaggtatttatatggttcag
gggataatcagtggtggtagggttgaggttagatttctctcttttagctc
ttgtttaaggtagtaggctctatgcccagatcttcactgtgagtagacta
ctgtctgaaattgcatcactatccaaccatgacacactgtgaaaaaaatg
gagtgccagttgactacaaaaacaaccataccttacgaactgagtgcttt
agagaataaagggaaaccaatagtgtatattagtgtattagttgttatgg
ataagatggtatgactaaaataaaaagaagaaagaaaccacagtgaaact
tgtgattagtgttaggttgtgagaatgaaagtaaagaggcatatagacat
cagacagaaaagaggggaggtgtgggagctaaagatgagctgaaaagaga
aggtaaagatatgtacttaaataatgtgaatcagtatcgtctctcagggg
gtgagagacagagactctaatctaggtcagccagggttctttgagaggaa
tagaagcaagatgatagcataaactgataataaaaagtaaaggtgaatag
atacacaggttgcctgatgctttgacctcgggtagtttataaatataaaa
gctccattggggaacaagctagggttggaaattggaggtaagttagattc
tctgttctctaaacttctagaacaagcaagggtagaggccaaaatctcca
tgtctcctcaatcctcacattgctgctagatgctggggtgaaatatgtgt
acagttcctacctaagatgacaaacctgagataggctgaagtgcgggaga
gctccctagcctcaggtggaaacctgcacctagaactgaatagttagcat
atgcgccatcactacccttgaggaaccagaactgggctccaacacttgat
tttaaaaaatagcctcatttaaaattcttcatgttttctttacaatggaa
ggtgcagtcatattagagtaaaaaagaaaaaaataataaatagtaatcat
ccttaccctacaaactgctctcgaactggggaatatggaaaagataaatc
ttaagcagaacaattggattatatttacttggcaatactgttataacgca
cacctataaa

gaattctttggcatggaggcatatctcagtccagagatgcccatcttgaa
tgaatactttaatattatcagcaacacaatggtagttggtcaggtttaga
gaacagagcaggaatgagttttctgtggtgcagatcttaaatccatacag
aaaatgataaattatccccacaaaattaaccagcattgcactcagagaca
tttcttaccagcctggttgttatttgaggcagcagaattcacaggtggga
aagaattttgaattagcattctcccagtgcagcctacaaagcacctttgg
gtacttgaaaactagccatcaggcggatgctagtaggttagtagcatatt
tatttcttcatgtcacctgacctcagtgtgtgatatcttcagccatagcg
tcttaccatcaagttactaactctagttttgcaatttcttactcttcacc
atcccttcacctgttatgcggatatatgtatacttttattctacctctgg
catatgaatcattgggtttccttaaagtatttatttcttatttcattatg
tatttatataataaaatgaacagaggtgttgtgggcacatggatataatc
tcaggactgaggtatttgaggcaggaggatcactagagttcaaaattcaa
gatgactctctgcaacatttcatggcttcacctcaaaaagaaaaaaaaag
gtgaaaggtaactatgttttctttttatgtgagtggtggagaaaacaaat
cttgcttccagtgacataatttatataaagggcatagctttgatccatat
agatggcagtcaatagatgcaattttgtatgctcatttctctgagtatct
ggagtatgggaaaggcatgtcagaggctaaaattctgaatgatcttctga
caatccgacatctctggaaagcagaaaaaatccatcacttaaagctccac
tcctctgttcttttgaagaaacataatattgttcatgaaagaatatgttt
ttcctttttcattttactctgatctaatgatggaaacactttcagatgga
ggtgaggattgccattattcagagacttggtgaaggttcctcagcagcca
aacatatcctgtaaaaaccattgttctcacctcacagaattggatgcaat
gtagaggggtgcaaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93724612_93725784
seq2: B6Ng01-303B20.b_45_1204 (reverse)

seq1  TTTATAGTGGT--GTTATAAACAGTATTGCAATGTAAAATTATAATCTAT  48
      |||||||  ||  ||||| ||||||||||| | |||||  ||||||| | 
seq2  TTTATAGGTGTGCGTTAT-AACAGTATTGCCAAGTAAA--TATAATCCA-  46

seq1  ATTG-TCTGCTTAAGGATTAATCTTTTTTCCAT-TATCCCAGTCCAAAGA  96
      |||| ||||||||| |||| |||  |||||||| |  |||||| |  |||
seq2  ATTGTTCTGCTTAA-GATTTATC--TTTTCCATATTCCCCAGTTC-GAGA  92

seq1  GCAAGTTTGGTAAGGTAGGGATGATTAATTATTTTATTTAATTTTTTCTT  146
      || ||||| ||| |||| |||||||| | |||||   ||| |||||||||
seq2  GC-AGTTT-GTAGGGTAAGGATGATT-ACTATTT--ATTATTTTTTTCTT  137

seq1  TTTAACTCTAAATATGACTGCACC-TCCATTGTAAAGAAAACATGAAGAA  195
      ||| ||||| |||||||||||||| |||||||||||||||||||||||||
seq2  TTTTACTCT-AATATGACTGCACCTTCCATTGTAAAGAAAACATGAAGAA  186

seq1  TTTTTAAAATGAGGGCTATTTTTTTAAAATCAAGTGTTGGAGCCCAGTTC  245
      ||||  |||||| ||||| |||||||||||||||||||||||||||||||
seq2  TTTT--AAATGA-GGCTA-TTTTTTAAAATCAAGTGTTGGAGCCCAGTTC  232

seq1  TGGTTCCTCAAGGGTAGTGATGGCGCATATGCTAACTATTCAGTTCTAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTCAAGGGTAGTGATGGCGCATATGCTAACTATTCAGTTCTAGG  282

seq1  TGCAGGTTTCCACCTGAGGCTAGGGAGCTCTCCCGCACTTCAGCCTATCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTTCCACCTGAGGCTAGGGAGCTCTCCCGCACTTCAGCCTATCT  332

seq1  CAGGTTTGTCATCTTAGGTAGGAACTGTACACATATTTCACCCCAGCATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTGTCATCTTAGGTAGGAACTGTACACATATTTCACCCCAGCATC  382

seq1  TAGCAGCAATGTGAGGATTGAGGAGACATGGAGATTTTGGCCTCTACCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCAATGTGAGGATTGAGGAGACATGGAGATTTTGGCCTCTACCCT  432

seq1  TGCTTGTTCTAGAAGTTTAGAGAACAGAGAATCTAACTTACCTCCAATTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTCTAGAAGTTTAGAGAACAGAGAATCTAACTTACCTCCAATTT  482

seq1  CCAACCCTAGCTTGTTCCCCAATGGAGCTTTTATATTTATAAACTACCCG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTAGCTTGTTCCCCAATGGAGCTTTTATATTTATAAACTACCCG  532

seq1  AGGTCAAAGCATCAGGCAACCTGTGTATCTATTCACCTTTACTTTTTATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAGCATCAGGCAACCTGTGTATCTATTCACCTTTACTTTTTATT  582

seq1  ATCAGTTTATGCTATCATCTTGCTTCTATTCCTCTCAAAGAACCCTGGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTATGCTATCATCTTGCTTCTATTCCTCTCAAAGAACCCTGGCT  632

seq1  GACCTAGATTAGAGTCTCTGTCTCTCACCCCCTGAGAGACGATACTGATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGATTAGAGTCTCTGTCTCTCACCCCCTGAGAGACGATACTGATT  682

seq1  CACATTATTTAAGTACATATCTTTACCTTCTCTTTTCAGCTCATCTTTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATTTAAGTACATATCTTTACCTTCTCTTTTCAGCTCATCTTTAG  732

seq1  CTCCCACACCTCCCCTCTTTTCTGTCTGATGTCTATATGCCTCTTTACTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACACCTCCCCTCTTTTCTGTCTGATGTCTATATGCCTCTTTACTT  782

seq1  TCATTCTCACAACCTAACACTAATCACAAGTTTCACTGTGGTTTCTTTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCACAACCTAACACTAATCACAAGTTTCACTGTGGTTTCTTTCT  832

seq1  TCTTTTTATTTTAGTCATACCATCTTATCCATAACAACTAATACACTAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATTTTAGTCATACCATCTTATCCATAACAACTAATACACTAAT  882

seq1  ATACACTATTGGTTTCCCTTTATTCTCTAAAGCACTCAGTTCGTAAGGTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTATTGGTTTCCCTTTATTCTCTAAAGCACTCAGTTCGTAAGGTA  932

seq1  TGGTTGTTTTTGTAGTCAACTGGCACTCCATTTTTTTCACAGTGTGTCAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTTTTGTAGTCAACTGGCACTCCATTTTTTTCACAGTGTGTCAT  982

seq1  GGTTGGATAGTGATGCAATTTCAGACAGTAGTCTACTCACAGTGAAGATC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGATAGTGATGCAATTTCAGACAGTAGTCTACTCACAGTGAAGATC  1032

seq1  TGGGCATAGAGCCTACTACCTTAAACAAGAGCTAAAAGAGAGAAATCTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGAGCCTACTACCTTAAACAAGAGCTAAAAGAGAGAAATCTAA  1082

seq1  CCTCAACCCTACCACCACTGATTATCCCCTGAACCATATAAATACCTCCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACCCTACCACCACTGATTATCCCCTGAACCATATAAATACCTCCA  1132

seq1  CTAAAAGTAGAAAGGCTGACTGGAATTC  1173
      ||||||||||||||||||||||||||||
seq2  CTAAAAGTAGAAAGGCTGACTGGAATTC  1160


seq1: chr12_93627066_93628222
seq2: B6Ng01-303B20.g_65_1233

seq1  GAATTCTTTGGCATGGAGGCATATCTCAGTCCAGAGATGCCCATCTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGCATGGAGGCATATCTCAGTCCAGAGATGCCCATCTTGAA  50

seq1  TGAATACTTTAATATTATCAGCAACACAATGGTAGTTGGTCAGGTTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTTTAATATTATCAGCAACACAATGGTAGTTGGTCAGGTTTAGA  100

seq1  GAACAGAGCAGGAATGAGTTTTCTGTGGTGCAGATCTTAAATCCATACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGCAGGAATGAGTTTTCTGTGGTGCAGATCTTAAATCCATACAG  150

seq1  AAAATGATAAATTATCCCCACAAAATTAACCAGCATTGCACTCAGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATAAATTATCCCCACAAAATTAACCAGCATTGCACTCAGAGACA  200

seq1  TTTCTTACCAGCCTGGTTGTTATTTGAGGCAGCAGAATTCACAGGTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACCAGCCTGGTTGTTATTTGAGGCAGCAGAATTCACAGGTGGGA  250

seq1  AAGAATTTTGAATTAGCATTCTCCCAGTGCAGCCTACAAAGCACCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTGAATTAGCATTCTCCCAGTGCAGCCTACAAAGCACCTTTGG  300

seq1  GTACTTGAAAACTAGCCATCAGGCGGATGCTAGTAGGTTAGTAGCATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGAAAACTAGCCATCAGGCGGATGCTAGTAGGTTAGTAGCATATT  350

seq1  TATTTCTTCATGTCACCTGACCTCAGTGTGTGATATCTTCAGCCATAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCATGTCACCTGACCTCAGTGTGTGATATCTTCAGCCATAGCG  400

seq1  TCTTACCATCAAGTTACTAACTCTAGTTTTGCAATTTCTTACTCTTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCATCAAGTTACTAACTCTAGTTTTGCAATTTCTTACTCTTCACC  450

seq1  ATCCCTTCACCTGTTATGCGGATATATGTATACTTTTATTCTACCTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCACCTGTTATGCGGATATATGTATACTTTTATTCTACCTCTGG  500

seq1  CATATGAATCATTGGGTTTCCTTAAAGTATTTATTTCTTATTTCATTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAATCATTGGGTTTCCTTAAAGTATTTATTTCTTATTTCATTATG  550

seq1  TATTTATATAATAAAATGAACAGAGGTGTTGTGGGCACATGGATATAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATAATAAAATGAACAGAGGTGTTGTGGGCACATGGATATAATC  600

seq1  TCAGGACTGAGGTATTTGAGGCAGGAGGATCACTAGAGTTCAAAATTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTGAGGTATTTGAGGCAGGAGGATCACTAGAGTTCAAAATTCAA  650

seq1  GATGACTCTCTGCAACATTTCATGGCTTCACCTCAAAAAGAAAAAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCTCTGCAACATTTCATGGCTTCACCTCAAAAAGAAAAAAAAAG  700

seq1  GTGAAAGGTAACTATGTTTTCTTTTTATGTGAGTGGTGGAGAAAACAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGTAACTATGTTTTCTTTTTATGTGAGTGGTGGAGAAAACAAAT  750

seq1  CTTGCTTCCAGTGACATAATTTATATAAAGGGCATAGCTTTGATCCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCAGTGACATAATTTATATAAAGGGCATAGCTTTGATCCATAT  800

seq1  AGATGGCAGTCAATAGATGCAATTTTGTATGCTCATTTCTCTGAGTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAGTCAATAGATGCAATTTTGTATGCTCATTTCTCTGAGTATCT  850

seq1  GGAGTATGGGAAAGGCATGTCAGAGGCTAAAATTCTGAATGATCTTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATGGGAAAGGCATGTCAGAGGCTAAAATTCTGAATGATCTTCTGA  900

seq1  CAATCCGACATCTCTGGAAAGCAG-AAAAATCCATCACTTAAAGCTCCAC  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAATCCGACATCTCTGGAAAGCAGAAAAAATCCATCACTTAAAGCTCCAC  950

seq1  TCCTCTGTTCTTTTGAAGAAACAT-ATATTGTTCATGAAAGAATATTGTT  998
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  TCCTCTGTTCTTTTGAAGAAACATAATATTGTTCATGAAAGAATA-TGTT  999

seq1  TTTTCCTTTTCATTTTACTCTGATCTAATGATGGAAACACTTTCAGATGG  1048
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTTCATTTTACTCTGATCTAATGATGGAAACACTTTCAGATGG  1049

seq1  AGGTGA-GATTG-CATTATTCCAGAGACTT-GTGAAG--TTCTCAGCAGG  1093
      |||||| ||||| ||||||| ||||||||| ||||||  | |||||||| 
seq2  AGGTGAGGATTGCCATTATT-CAGAGACTTGGTGAAGGTTCCTCAGCAGC  1098

seq1  CAAACATAT-CTGTAAAA--CAATGTCTCCACCTCACAGA--TTGATGCA  1138
      ||||||||| ||||||||  || |||   |||||||||||  | ||||||
seq2  CAAACATATCCTGTAAAAACCATTGTTCTCACCTCACAGAATTGGATGCA  1148

seq1  TTGTAGA-GGGTG-AAAATTC  1157
       |||||| ||||| |||||||
seq2  ATGTAGAGGGGTGCAAAATTC  1169


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