BAC Information

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BAC

Clone NameB6Ng01-304I22
Chromosome12 (Build37)
Map Location 91,403,495 - 91,491,266
singlet/doubletdoublet
Overlap geneNrxn3
Upstream genenone
Downstream geneLOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304I22.bB6Ng01-304I22.g
ACCGA098084GA098085
length1,089623
definitionB6Ng01-304I22.b B6Ng01-304I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,403,495 - 91,404,598)(91,490,679 - 91,491,266)
sequence
gaattctctaacaatgacagatcatttgtttttatgggcaaatgacttac
tatgtattcagtcttccttgattccatccattccttattatatatttaca
aggcactattacatgggactgaaaagatgtctcagttagtagagtacttg
ccttataggcctggatgtaatctctagcacccatgtaaaaacccaggcat
ggtggcatagttctgtaaccacagtaattgggaggcaaaaaggagtgaga
tctcaggtgcccacaagccagtaaatatagcctaattgataacccccatg
ccaatgagggacttgatatcagagaaaatagctgagtctgtcttctagct
tctacactctgtgaacacacctacctacaagcacatatatgcacacacac
attagtaaaagagaggaataaatataagaggatccatcacataagcaatg
ttatttcattataatagtcctttgaagaatgttaaagggagtgtcttgcc
ccacagtgtattatgaaaaatgggttcagaatagttaagctgccgcaagg
tcagggaggaatggtgcggagctaatgtgtttatcctccacttcattcct
tcggtagacacatgggcacaggagtttattttcatggaagctgcatatta
tagattctaagcctgggcaactctatgggtatttgccacaaggcttccat
gaccactaatgaactgaaactaaacagttagctatggattataatgccac
tgtggtcccatgacaaattacaaggaggtgatgataatgaaatcttatga
ctgcaaataaagagagcacatctgaggtctagcacagctacatttaccac
tgtggaaagcaaagagaaacatcagagtgagggtctacactgaatttgac
aatgtgctaacagaactagaagaccttttgaaaaatccagattttagtag
caaacgtgtgacatctagatcaggcaaatatttatctgacagaaattaat
cttgtctgtctgatctattatggatcttacagaaaatctctcagatatat
cttgtcgatcactaactgatgagtcagactgtcttgcct

gaattctagtgagatgtattcctttacaataaataaaatactccatccca
ttctgaaaatgatttcgattaattttgagccaaaagtttgtttcaagaat
atccattttccatttagaattaatagtctaaattgtttagcaaattaaac
accacattagaagtatgacttcaaatctttattttgaataccatgtaaaa
aaaattataaagcaattagaagtgaagatatggcttcctggaggaagtta
ttctcccatcaatactgaatgatgatgtttaattgccttgaatgaggaat
catagatatgtgctagatattatctatttattttgaatacctctagaacc
agtgctttagaaaatctaaagctctttctctctctctctctctctttctg
tctgtctgtctttctttctttctttctttctttctttctttctttctttc
ttgtggtgtgtgtgtatgtgaatgcatacacacacacacacacacacaca
cacacacacacacacacacacacacacacacacacatatatatatatata
tatatatatatatatatatatatatatatatatgtgtgtgtatgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_91403495_91404598
seq2: B6Ng01-304I22.b_44_1132

seq1  GAATTCTCTAACAATGACAGATCATTTGTTTTTATGGGCAAATGACTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAACAATGACAGATCATTTGTTTTTATGGGCAAATGACTTAC  50

seq1  TATGTATTCAGTCTTCCTTGATTCCATCCATTCCTTATTATATATTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTCAGTCTTCCTTGATTCCATCCATTCCTTATTATATATTTACA  100

seq1  AGGCACTATTACATGGGACTGAAAAGATGTCTCAGTTAGTAGAGTACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTATTACATGGGACTGAAAAGATGTCTCAGTTAGTAGAGTACTTG  150

seq1  CCTTATAGGCCTGGATGTAATCTCTAGCACCCATGTAAAAACCCAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAGGCCTGGATGTAATCTCTAGCACCCATGTAAAAACCCAGGCAT  200

seq1  GGTGGCATAGTTCTGTAACCACAGTAATTGGGAGGCAAAAAGGAGTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCATAGTTCTGTAACCACAGTAATTGGGAGGCAAAAAGGAGTGAGA  250

seq1  TCTCAGGTGCCCACAAGCCAGTAAATATAGCCTAATTGATAACCCCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTGCCCACAAGCCAGTAAATATAGCCTAATTGATAACCCCCATG  300

seq1  CCAATGAGGGACTTGATATCAGAGAAAATAGCTGAGTCTGTCTTCTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGGGACTTGATATCAGAGAAAATAGCTGAGTCTGTCTTCTAGCT  350

seq1  TCTACACTCTGTGAACACACCTACCTACAAGCACATATATGCACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTCTGTGAACACACCTACCTACAAGCACATATATGCACACACAC  400

seq1  ATTAGTAAAAGAGAGGAATAAATATAAGAGGATCCATCACATAAGCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAAAAGAGAGGAATAAATATAAGAGGATCCATCACATAAGCAATG  450

seq1  TTATTTCATTATAATAGTCCTTTGAAGAATGTTAAAGGGAGTGTCTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATTATAATAGTCCTTTGAAGAATGTTAAAGGGAGTGTCTTGCC  500

seq1  CCACAGTGTATTATGAAAAATGGGTTCAGAATAGTTAAGCTGCCGCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGTATTATGAAAAATGGGTTCAGAATAGTTAAGCTGCCGCAAGG  550

seq1  TCAGGGAGGAATGGTGCGGAGCTAATGTGTTTATCCTCCACTTCATTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGGAATGGTGCGGAGCTAATGTGTTTATCCTCCACTTCATTCCT  600

seq1  TCGGTAGACACATGGGCACAGGAGTTTATTTTCATGGAAGCTGCATATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTAGACACATGGGCACAGGAGTTTATTTTCATGGAAGCTGCATATTA  650

seq1  TAGATTCTAAGCCTGGGCAACTCTATGGGTATTTGCCACAAGGCTTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTAAGCCTGGGCAACTCTATGGGTATTTGCCACAAGGCTTCCAT  700

seq1  GACCACTAATGAACTGAAACTAAACAGTTAGCTATGGATTATAATGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTAATGAACTGAAACTAAACAGTTAGCTATGGATTATAATGCCAC  750

seq1  TGTGGTCCCATGACAAATTACAAGGAGGTGATGATAATGAAATCTTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCCATGACAAATTACAAGGAGGTGATGATAATGAAATCTTATGA  800

seq1  CTGCAAATAAAGAGAGCACATCTGAGGTCTAGCACAGCTACATTTACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATAAAGAGAGCACATCTGAGGTCTAGCACAGCTACATTTACCAC  850

seq1  TGTGGAAAGCAAAGAGAAACATCAGAGTGAGGGTCTACACTGAA-TTGAC  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGGAAAGCAAAGAGAAACATCAGAGTGAGGGTCTACACTGAATTTGAC  900

seq1  AATGTGCTAACAGAACTAAGAAGACCTTTTGAAAAATCCAGATTTTAGTA  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATGTGCTAACAGAACT-AGAAGACCTTTTGAAAAATCCAGATTTTAGTA  949

seq1  GCAAACGTGTGACATCTAAGATCAGGGCAAAATATTTATTCTGACAGAAA  999
      ||||||||||||||||| ||||||||   ||||||||| |||||||||||
seq2  GCAAACGTGTGACATCT-AGATCAGG--CAAATATTTA-TCTGACAGAAA  995

seq1  TTAAATCTTGTCTTGTCCTGGATCTATTATGGATCTTACAGAAAATCTTC  1049
      || ||||||||| ||||   ||||||||||||||||||||||||||| ||
seq2  TT-AATCTTGTC-TGTC--TGATCTATTATGGATCTTACAGAAAATC-TC  1040

seq1  TCAAGAATATATCTTGTCGATCAACTAACTTGGTTGAGCCAGAACTGTCT  1099
      |||   |||||||||||||||| |||||||  | |||| ||| |||||||
seq2  TCA--GATATATCTTGTCGATC-ACTAACT--GATGAGTCAG-ACTGTCT  1084

seq1  TGCCT  1104
      |||||
seq2  TGCCT  1089


seq1: chr12_91490679_91491266
seq2: B6Ng01-304I22.g_64_647 (reverse)

seq1  CATATATATATATATATATATATATATATATATATATATATATATATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CATATATATATATATATATATATATATATATATATATATATATATATA--  48

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  96

seq1  TGTGTGTGTGTATGCATTCACATACACACACACCACAAGAAAGAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTATGCATTCACATACACACACACCACAAGAAAGAAAGAAA  146

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGACAGACAGAAAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGACAGACAGAAAGAGAGA  196

seq1  GAGAGAGAGAGAAAGAGCTTTAGATTTTCTAAAGCACTGGTTCTAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAAAGAGCTTTAGATTTTCTAAAGCACTGGTTCTAGAGGT  246

seq1  ATTCAAAATAAATAGATAATATCTAGCACATATCTATGATTCCTCATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAATAAATAGATAATATCTAGCACATATCTATGATTCCTCATTCA  296

seq1  AGGCAATTAAACATCATCATTCAGTATTGATGGGAGAATAACTTCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTAAACATCATCATTCAGTATTGATGGGAGAATAACTTCCTCCA  346

seq1  GGAAGCCATATCTTCACTTCTAATTGCTTTATAATTTTTTTTACATGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCATATCTTCACTTCTAATTGCTTTATAATTTTTTTTACATGGTA  396

seq1  TTCAAAATAAAGATTTGAAGTCATACTTCTAATGTGGTGTTTAATTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAAAGATTTGAAGTCATACTTCTAATGTGGTGTTTAATTTGCT  446

seq1  AAACAATTTAGACTATTAATTCTAAATGGAAAATGGATATTCTTGAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTAGACTATTAATTCTAAATGGAAAATGGATATTCTTGAAACA  496

seq1  AACTTTTGGCTCAAAATTAATCGAAATCATTTTCAGAATGGGATGGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGGCTCAAAATTAATCGAAATCATTTTCAGAATGGGATGGAGTA  546

seq1  TTTTATTTATTGTAAAGGAATACATCTCACTAGAATTC  588
      ||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTGTAAAGGAATACATCTCACTAGAATTC  584


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