BAC Information

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BAC

Clone NameB6Ng01-304M05
Chromosome12 (Build37)
Map Location 30,262,139 - 30,263,311
singlet/doubletsinglet
Overlap geneMyt1l
Upstream geneAllc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304M05.bB6Ng01-304M05.g
ACCGA098232GA098233
length1,2011,146
definitionB6Ng01-304M05.b B6Ng01-304M05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagactcgtttaattattagcctaagtaaaatataattgtgcaat
aaatctgcagggaagggggataaagcaagcagccatttttaaggcagaga
gaaatcacatttggatcaacttccaccctggttcatctcatccgagtctc
tcttcactggaatggttccatgatgtgcttggatgttagggaggatggaa
agatggttgtcaggtatgacacatgctgggcagaggggcagagacacgag
tctttagactagtctctgcaaggaaatcattatgtgctaatagagaataa
actttcccaaaaaaatccagtataaggggctgaggtgaaaatacaggtgg
taaagtgcttgcttcgcaagcatggagacccgagtttggcccccagaaat
actttcaaaatgttgggtttggaagtatgctgagaatcctagagctggga
cggcagagatgggagaatgtcggggactttctgtctagccagtctggcct
acgtggttaacttcgaaccactgaaagaccattctcaaaggaggtggatg
gccttcctaagaataacacccaatgttgtcctcgggtctccacgtaccac
atggcacacatctttatccccacatatctacaagcacacacacacacaca
cacacacacacacacacacacacacacacacacattttagaagcccttta
aaagtattttagaccacatatttgttaaagcaaattagatgtcactcggc
aacagtatagtaggttttcccagcctcctcccctccaaacaagggcaagg
tttatcatctttttatcagatgagaaaattaagcaaggtgatggaaactg
gcatttgctcatgggatagaatttcccccagggtccatggccatactgcc
tgaacatacctaatccccatctaactatctacgaagattatcttctagtt
tgctttgcctctgatttgccactgttgaggcagaagaagcagccatcctt
tgggacctctggttgaccttggccattacttcacctgctcttttcagcag
aagtcagcatgcgtaatctcaagctttccctggcctcatattcaccattc
ctgcctttctcttctccccaagtatacaggaagattggaagtatgtgcct
gtgggttttctggcttggcctcgtgagaaagaaatcacaccttgtagtac
c
gaattctcacctgaggaataccgaatggctgagaaatacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacatcagtcagaatgagtaagatcaaaaattcaggtgacagt
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctcc
aaaaattgggcatggtactacaggcagatcctgcaaaacctctcctgggc
atatatccagaagatgttccaactagtaagaaagacacatgctccgctat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaattgtggtacattcacccagtg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcattatcctgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatataagttacaatttgcaaaacacatgaaactcaa
gaagaacaaagaccaaagtgtggacactttggcccttcttagaattggga
acaaaacatccatggaaggagttacagagacaaagtttggagctgagata
aaaggatggaccatctagagactgccatatacagggatccatcccataat
cagcctccaaacgctgacaccattgcatacactagcaagatcttgctaaa
aggaccctgatatagctgtctcttatgagactatgccggggcctagcaaa
caacagaagtgggatgctcacagtcagctattgggatggatcacagggcc
ccccaatggaggagctagagaagtaacccaggagctagagggatctgcaa
cctatagtgatcacatatgaactacctagtacctcgagctctggctctaa
gctgctaatggaatcaaaagatgcctagttggctcatccactgaagagga
ggccatggactgctaactttatatgctccatgatcatgagtatacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_30262139_30263311
seq2: B6Ng01-304M05.b_49_1249 (reverse)

seq1  GGTACTACAAGG-ATGATTTC-TTCCCA-GA-GCCAAG-CAGAAAA--CA  43
      ||||||||||||  ||||||| ||| || || |||||| |||||||  ||
seq2  GGTACTACAAGGTGTGATTTCTTTCTCACGAGGCCAAGCCAGAAAACCCA  50

seq1  CAGGCA-TTACT--CAATCTCCTGGTAT-CTGGGGGAG-AGAGAAGGGCA  88
      ||||||  ||||  |||||| |  |||| || |||||| |||||| ||||
seq2  CAGGCACATACTTCCAATCTTCCTGTATACTTGGGGAGAAGAGAAAGGCA  100

seq1  GG-ATGGTGAATATGAGGCCAGG--AAGCTGAAGAATTACGCATGCTGAC  135
      || ||||||||||||||||||||  |||||  || |||||||||||||||
seq2  GGAATGGTGAATATGAGGCCAGGGAAAGCTTGAG-ATTACGCATGCTGAC  149

seq1  -TCTGCTGAAA--GGCA-GTG-AGT-ATGGCCAGGGTCAA-CAGAGGTCC  178
       ||||||||||   ||| ||| ||| ||||||| |||||| |||||||||
seq2  TTCTGCTGAAAAGAGCAGGTGAAGTAATGGCCAAGGTCAACCAGAGGTCC  199

seq1  C-AAGGAT-GCTGCT--CTCTGCCTCAACAGTGGCAAATCAGAGGCAAAG  224
      | |||||| ||||||   ||||||||||||||||||||||||||||||||
seq2  CAAAGGATGGCTGCTTCTTCTGCCTCAACAGTGGCAAATCAGAGGCAAAG  249

seq1  C-AACTAG-AGATAATCTTCGTAGATAGTTAGAT-GGGATTAGGTATGTT  271
      | |||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  CAAACTAGAAGATAATCTTCGTAGATAGTTAGATGGGGATTAGGTATGTT  299

seq1  CAGGCAGTATGGCCATGGACCCTGGGGGAAATTCTAT-CCATGAGCAAAT  320
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGGCAGTATGGCCATGGACCCTGGGGGAAATTCTATCCCATGAGCAAAT  349

seq1  GCCAGTTTCCATCACCTTGCTTAATTTTCTCATCTGAT-AAAAGATGATA  369
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCCAGTTTCCATCACCTTGCTTAATTTTCTCATCTGATAAAAAGATGATA  399

seq1  AACCTTGCCCTTGTTTGGAGGGGAGGAGGCTGGGAAAACCTACTATACTG  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGCCCTTGTTTGGAGGGGAGGAGGCTGGGAAAACCTACTATACTG  449

seq1  TTGCCGAGTGACATCTAATTTGCTTTAACAAATATGTGGTCTAAAATACT  469
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGAGTGACATCTAATTTGCTTTAACAAATATGTGGTCTAAAATACT  499

seq1  TTTAAAGGGCTTCTAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  519
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TTTAAAGGGCTTCTAAAA--TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  547

seq1  TGTGTGTGTGTGTGTGTGTGCTTGTAGATATGTGGGGATAAAGATGTGTG  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGCTTGTAGATATGTGGGGATAAAGATGTGTG  597

seq1  CCATGTGGTACGTGGAGACCCGAGGACAACATTGGGTGTTATTCTTAGGA  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTACGTGGAGACCCGAGGACAACATTGGGTGTTATTCTTAGGA  647

seq1  AGGCCATCCACCTCCTTTGAGAATGGTCTTTCAGTGGTTCGAAGTTAACC  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCCACCTCCTTTGAGAATGGTCTTTCAGTGGTTCGAAGTTAACC  697

seq1  ACGTAGGCCAGACTGGCTAGACAGAAAGTCCCCGACATTCTCCCATCTCT  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGCCAGACTGGCTAGACAGAAAGTCCCCGACATTCTCCCATCTCT  747

seq1  GCCGTCCCAGCTCTAGGATTCTCAGCATACTTCCAAACCCAACATTTTGA  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCCCAGCTCTAGGATTCTCAGCATACTTCCAAACCCAACATTTTGA  797

seq1  AAGTATTTCTGGGGGCCAAACTCGGGTCTCCATGCTTGCGAAGCAAGCAC  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTCTGGGGGCCAAACTCGGGTCTCCATGCTTGCGAAGCAAGCAC  847

seq1  TTTACCACCTGTATTTTCACCTCAGCCCCTTATACTGGATTTTTTTGGGA  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACCTGTATTTTCACCTCAGCCCCTTATACTGGATTTTTTTGGGA  897

seq1  AAGTTTATTCTCTATTAGCACATAATGATTTCCTTGCAGAGACTAGTCTA  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATTCTCTATTAGCACATAATGATTTCCTTGCAGAGACTAGTCTA  947

seq1  AAGACTCGTGTCTCTGCCCCTCTGCCCAGCATGTGTCATACCTGACAACC  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCGTGTCTCTGCCCCTCTGCCCAGCATGTGTCATACCTGACAACC  997

seq1  ATCTTTCCATCCTCCCTAACATCCAAGCACATCATGGAACCATTCCAGTG  1019
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCATCCTCCCTAACATCCAAGCACATCATGGAACCATTCCAGTG  1047

seq1  AAGAGAGACTCGGATGAGATGAACCAGGGTGGAAGTTGATCCAAATGTGA  1069
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACTCGGATGAGATGAACCAGGGTGGAAGTTGATCCAAATGTGA  1097

seq1  TTTCTCTCTGCCTTAAAAATGGCTGCTTGCTTTATCCCCCTTCCCTGCAG  1119
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTGCCTTAAAAATGGCTGCTTGCTTTATCCCCCTTCCCTGCAG  1147

seq1  ATTTATTGCACAATTATATTTTACTTAGGCTAATAATTAAACGAGTCTGA  1169
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGCACAATTATATTTTACTTAGGCTAATAATTAAACGAGTCTGA  1197

seq1  ATTC  1173
      ||||
seq2  ATTC  1201