BAC Information

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BAC

Clone NameB6Ng01-304P21
Chromosome12 (Build37)
Map Location 100,570,058 - 100,710,070
singlet/doubletdoublet
Overlap geneChes1, LOC100039892
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304P21.bB6Ng01-304P21.g
ACCGA098398GA098399
length6731,081
definitionB6Ng01-304P21.b B6Ng01-304P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,709,398 - 100,710,070)(100,570,058 - 100,571,135)
sequence
gaattctcctttctgatgcaggagagatgcaatgcagaatcaacactggg
aagcatagaccggggctggcccttcttcccgctggcagtgggaccctgtg
caggacccacgcaccatgaggaaatcccatcctgcatcctgctcatctct
ttgtgtaggagtgggaaaccttcttgtgggagtcctgcctgtcagtctgc
ctctcatctgtgtgggtccccagagagggaggaggaggaatctcttcagg
cgggtagtgaatgaaaagctggaaaagatggggatgcctctcttcacgaa
gcccaggcttgcacaacaagataaaaatatctcctgcaatctgcaacacc
ggatccttttgaaatcttgaagaagtggtttaaaaacaaaacaaaaaaaa
taccactcatattgagtgtacgcaagcaattcctcagagtctttgaggac
gttggttagctcttcaaaatattcattataaatcagattctttcttgatt
caacatagattcaagtgtcaatgaggaacgggacttgaatacagcagtga
atgaggcacagaatgcttggcctcttggtgaaatgggagtgaggggcagg
gaggtaggatgctgaacaaaataatctatcatcttcaggtgctgtggaga
aagagaggtggaggtggggtgca
gaattcctgaagattcgcagggtctcagtaatgagttgatgaacgataca
agcaggacctggtgtctgaaaaaaacccaaaggctctggacaaaaaccac
ttgatcctacgagacaaggatacctgcctggctccttcaagaagacttct
ataagggtgaggactgttctcattaattcactggataaacaatgggggac
ggacagtctgcatggtttgatcgacagcttttggaaacgatcttcttagc
aaaacactgcaggtcaaaattcacaaggaagcaagtgtcactaaaacgag
gaggtaaactgcgggcgagaatcaaagaactagacgaagcagaacaaaga
actaagtcagtccagccagagagctggacccactcccaggacgaggcctg
aggcctgaggcctgaacccttgcttctgaggagcagggcaggcctgccgg
ccctcatgtttggtttgcacttcacactgtaggcctggagagctgcaaac
accacaccaagcaagtacactccaccccactggcaggccaacagatctga
gaggttagtctgcaaggggaagcttgagttctccagagatggggaaggcc
tttgagacgacccaggcagctgcctggctctgaccgcgcccaccagggtc
acctcagtctttctgtccaccatccacgcctcaacccaagagtccaccca
gctttgatgtctgttctgacaagagatcattcttctgacgttgagcccag
atctttctgtcgatgacttcagatcccgcttcgctgacggtgcaggtgtc
tgctagcttctccttctggtaggcttttggctgtcatgttggttctctca
gcggcagggcaggaaggcagcagctttcctctcattttcaaaggagctcc
tgccttgtgaacagaagctgcctagagaagcctttggatgggggagctgg
gagtgagtgatcagataactgatacttagtagaatcactgactgcacctt
attcctgactgacaacaccacaggagacaaatccttctctgactgccttc
aatctcttagatcatggtccaacctgttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100709398_100710070
seq2: B6Ng01-304P21.b_48_720 (reverse)

seq1  TGCACCCCACCTCCACCTCTCTTTCTCCACAGCACCTGAAGATGATAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCCACCTCCACCTCTCTTTCTCCACAGCACCTGAAGATGATAGAT  50

seq1  TATTTTGTTCAGCATCCTACCTCCCTGCCCCTCACTCCCATTTCACCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTCAGCATCCTACCTCCCTGCCCCTCACTCCCATTTCACCAAG  100

seq1  AGGCCAAGCATTCTGTGCCTCATTCACTGCTGTATTCAAGTCCCGTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGCATTCTGTGCCTCATTCACTGCTGTATTCAAGTCCCGTTCCT  150

seq1  CATTGACACTTGAATCTATGTTGAATCAAGAAAGAATCTGATTTATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACACTTGAATCTATGTTGAATCAAGAAAGAATCTGATTTATAATG  200

seq1  AATATTTTGAAGAGCTAACCAACGTCCTCAAAGACTCTGAGGAATTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGAAGAGCTAACCAACGTCCTCAAAGACTCTGAGGAATTGCTT  250

seq1  GCGTACACTCAATATGAGTGGTATTTTTTTTGTTTTGTTTTTAAACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACACTCAATATGAGTGGTATTTTTTTTGTTTTGTTTTTAAACCACT  300

seq1  TCTTCAAGATTTCAAAAGGATCCGGTGTTGCAGATTGCAGGAGATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGATTTCAAAAGGATCCGGTGTTGCAGATTGCAGGAGATATTTT  350

seq1  TATCTTGTTGTGCAAGCCTGGGCTTCGTGAAGAGAGGCATCCCCATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTTGTGCAAGCCTGGGCTTCGTGAAGAGAGGCATCCCCATCTTT  400

seq1  TCCAGCTTTTCATTCACTACCCGCCTGAAGAGATTCCTCCTCCTCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTTTCATTCACTACCCGCCTGAAGAGATTCCTCCTCCTCCCTCT  450

seq1  CTGGGGACCCACACAGATGAGAGGCAGACTGACAGGCAGGACTCCCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACCCACACAGATGAGAGGCAGACTGACAGGCAGGACTCCCACAA  500

seq1  GAAGGTTTCCCACTCCTACACAAAGAGATGAGCAGGATGCAGGATGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTCCCACTCCTACACAAAGAGATGAGCAGGATGCAGGATGGGAT  550

seq1  TTCCTCATGGTGCGTGGGTCCTGCACAGGGTCCCACTGCCAGCGGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATGGTGCGTGGGTCCTGCACAGGGTCCCACTGCCAGCGGGAAGA  600

seq1  AGGGCCAGCCCCGGTCTATGCTTCCCAGTGTTGATTCTGCATTGCATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGCCCCGGTCTATGCTTCCCAGTGTTGATTCTGCATTGCATCTC  650

seq1  TCCTGCATCAGAAAGGAGAATTC  673
      |||||||||||||||||||||||
seq2  TCCTGCATCAGAAAGGAGAATTC  673

seq1: chr12_100570058_100571135
seq2: B6Ng01-304P21.g_68_1148

seq1  GAATTCCTGAAGATTCGCAGGGTCTCAGTAATGAGTTGATGAACGATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAGATTCGCAGGGTCTCAGTAATGAGTTGATGAACGATACA  50

seq1  AGCAGGACCTGGTGTCTGAAAAAAACCCAAAGGCTCTGGACAAAAACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGACCTGGTGTCTGAAAAAAACCCAAAGGCTCTGGACAAAAACCAC  100

seq1  TTGATCCTACGAGACAAGGATACCTGCCTGGCTCCTTCAAGAAGACTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTACGAGACAAGGATACCTGCCTGGCTCCTTCAAGAAGACTTCT  150

seq1  ATAAGGGTGAGGACTGTTCTCATTAATTCACTGGATAAACAATGGGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTGAGGACTGTTCTCATTAATTCACTGGATAAACAATGGGGGAC  200

seq1  GGACAGTCTGCATGGTTTGATCGACAGCTTTTGGAAACGATCTTCTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTCTGCATGGTTTGATCGACAGCTTTTGGAAACGATCTTCTTAGC  250

seq1  AAAACACTGCAGGTCAAAATTCACAAGGAAGCAAGTGTCACTAAAACGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGCAGGTCAAAATTCACAAGGAAGCAAGTGTCACTAAAACGAG  300

seq1  GAGGTAAACTGCGGGCGAGAATCAAAGAACTAGACGAAGCAGAACAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAACTGCGGGCGAGAATCAAAGAACTAGACGAAGCAGAACAAAGA  350

seq1  ACTAAGTCAGTCCAGCCAGAGAGCTGGACCCACTCCCAGGACGAGGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTCAGTCCAGCCAGAGAGCTGGACCCACTCCCAGGACGAGGCCTG  400

seq1  AGGCCTGAGGCCTGAACCCTTGCTTCTGAGGAGCAGGGCAGGCCTGCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGAGGCCTGAACCCTTGCTTCTGAGGAGCAGGGCAGGCCTGCCGG  450

seq1  CCCTCATGTTTGGTTTGCACTTCACACTGTAGGCCTGGAGAGCTGCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATGTTTGGTTTGCACTTCACACTGTAGGCCTGGAGAGCTGCAAAC  500

seq1  ACCACACCAAGCAAGTACACTCCACCCCACTGGCAGGCCAACAGATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCAAGCAAGTACACTCCACCCCACTGGCAGGCCAACAGATCTGA  550

seq1  GAGGTTAGTCTGCAAGGGGAAGCTTGAGTTCTCCAGAGATGGGGAAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGTCTGCAAGGGGAAGCTTGAGTTCTCCAGAGATGGGGAAGGCC  600

seq1  TTTGAGACGACCCAGGCAGCTGCCTGGCTCTGACCGCGCCCACCAGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACGACCCAGGCAGCTGCCTGGCTCTGACCGCGCCCACCAGGGTC  650

seq1  ACCTCAGTCTTTCTGTCCACCATCCACGCCTCAACCCAAGAGTCCACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTCTTTCTGTCCACCATCCACGCCTCAACCCAAGAGTCCACCCA  700

seq1  GCTTTGATGTCTGTTCTGACAAGAGATCATTCTTCTGACGTTGAGCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATGTCTGTTCTGACAAGAGATCATTCTTCTGACGTTGAGCCCAG  750

seq1  ATCTTTCTGTCGATGACTTCAGATCCCGCTTCGCTGACGGTGCAGGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGTCGATGACTTCAGATCCCGCTTCGCTGACGGTGCAGGTGTC  800

seq1  TGCTAGCTTCTCCTTCTGGTAGGCTTTTGGCTGTCATGTTGGTTCTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTTCTCCTTCTGGTAGGCTTTTGGCTGTCATGTTGGTTCTCTCA  850

seq1  GGCGGCAGGGCAGGAAGGCAGCAGGCTTTCCTCTCA-TTTCAAAGGAGC-  898
       |||||||||||||||||||||| |||||||||||| |||||||||||| 
seq2  -GCGGCAGGGCAGGAAGGCAGCA-GCTTTCCTCTCATTTTCAAAGGAGCT  898

seq1  CCTGCCTTGTGAACAGAAGCTGCCTAGAGAAGCC-TTGGAT-GGGGAGCT  946
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  CCTGCCTTGTGAACAGAAGCTGCCTAGAGAAGCCTTTGGATGGGGGAGCT  948

seq1  GGGAGTGAGTGATCAGATAACTGATAACTTAGTAAGATCACTGACTGCAC  996
      ||||||||||||||||||||||||| ||||||||  ||||||||||||||
seq2  GGGAGTGAGTGATCAGATAACTGAT-ACTTAGTAGAATCACTGACTGCAC  997

seq1  CT--ATCCTGACTGACAACA-CACAGGAGACAAATCCTTCTCCTGACTGC  1043
      ||   ||||||||||||||| |||||||||||||||||||| ||||||||
seq2  CTTATTCCTGACTGACAACACCACAGGAGACAAATCCTTCT-CTGACTGC  1046

seq1  CTCAAATCTCTTAGGAATCATGGTCCA--CTGTTCCA  1078
      ||  ||||||||||  |||||||||||  ||||||||
seq2  CTTCAATCTCTTAG--ATCATGGTCCAACCTGTTCCA  1081