BAC Information

Click to search

BAC

Clone NameB6Ng01-307G05
Chromosome12 (Build37)
Map Location 13,223,930 - 13,225,034
singlet/doubletsinglet
Overlap genenone
Upstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449
Downstream geneDdx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307G05.bB6Ng01-307G05.g
ACCGA100174GA100175
length1,1871,110
definitionB6Ng01-307G05.b B6Ng01-307G05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaatccatctggccgtgggctttttttgattgggaggt
ttttaatgacttcttctatttccttgtgtgatatgggcctgtttagatag
tttacctgctcttgatttaattttggtatgtggcatctgtctagaaaacc
atccattttatctatatttcccagttttgttgagtatagacttttatagt
aggacctactcctcttgggtgagtttgtttctttataacttcaagtctct
caagaaagaaattgaagaagatctcagaaaatagagagaactcctatgtt
catggattggcagaattaacatagtaaaaatggccatcctacaaaaggca
atctatagattcaatgcaatcctccatcaaaatcccaacacaattcttca
aagacatggaaagaacaattctcaaattcatctggaaaggcaaaaaaccc
agaatattgaaaacaattcctaacaataaaagaacagctggaggaatcat
catccctgacctcacgccttactagggagcaatagtgataaaaactgtgt
agtatcggtacagagacagacatgttgatcaatggaatagaattgaagac
ccagaaataaaaccacacacttgaggtcacttaatctttgacaaagatgc
caaaaatatataatggaaaacagtaagcatcttcaataaatggtgctggt
caaactggctgtctgtatgtagaagaatgaaaatataaccacatttgtca
ccttgtacaaagttcaagtccaagtgtatcaaggacctcaacataaaacc
agatacactgaatctaatagaagagaaagtgggaaagagccttgaactca
ttggcacaggggggaaatttcctaaacagaactccaatggctcagctcta
agatcaagaatttgatagatgggacctcatgaaactgggaaagcttctgt
aagcaaaggacatagtcagtaagacaaatccacaagctacagattgggga
aaaaaaaaattcttcacctaacccccacattccgatagaaagttctaaat
tattccaaaaatatttattaaagaacctcaggagtttaattcacccaaaa
aaacccgaaccaccattcttgaaaattgggagtatggaaccttacctgga
gaattccccaaccgtgaagaaactctctttgaaaatg
gaattcagtgttcaagacaacattctgagaaggtacgcactgcagcactg
tacaaggacaatggaaataatgtaaataacaagaaatacggtacgagtgc
ccctcatctactgaactttcgcagaacgcctgataggctgctgaataatg
cacattcttttccttttcatgaaggaaccacagcttagagaagctgtgac
cttgcgctctgatatactgaagcatgggctcatgcagattccacccaggc
cacagtgactgaagctcatatgcctctaagttcccctcagtgctcatcag
cactgcgggagcgttatgacataaattatcaatggattgttacaagctta
ttaagagtggaaatacatcccaattcctcaagcacaaaaccactccagtc
actatgcaggggtgaccctcagaatcaaagcccgaagccacacccatcga
acactgaagtggagtaaaccatagcatttgtttagagagaagaatgaccc
agacctgtgagcagcatttcagctcctgtagaactgaaaaaacaagggac
aataaggaagctgagtcagaaacagtaccatttacaagttaatatttaac
atgttctagcctttgcagggcctctagtgctctgaggcagacgccaaagt
tctgtgaccaagatctgaccatgcagcagctcagataagacccagttaca
gtaccagacaattcacagagagtgggcagctatttcctagggtcagccag
gtcccttatcaggtctttctgccatttcccaagaatcacactaaactaat
agtatctactggctcactagtactgctcccatggccgagtgaggggaaag
gcagaggaggcacagaagtgacagccattcttcttataccctactgatgg
gatgctgggaaaggagaccctagcagactcaggagttcctatttgtaaag
ggaagaaggatgcagtagcatttctcaggttcagtcatcaatgggcaagc
agcttaatgaacactcataggctttacccctggcacaaacactagagagc
attagttggggaggcgggaaaaagagaacagcagtttgggtcaagtctcc
accactgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_13223930_13225034
seq2: B6Ng01-307G05.g_66_1175

seq1  GAATTCAGTGTTCAAGACAACATTCTGAGAAGGTACGCACTGCAGCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTCAAGACAACATTCTGAGAAGGTACGCACTGCAGCACTG  50

seq1  TACAAGGACAATGGAAATAATGTAAATAACAAGAAATACGGTACGAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGACAATGGAAATAATGTAAATAACAAGAAATACGGTACGAGTGC  100

seq1  CCCTCATCTACTGAACTTTCGCAGAACGCCTGATAGGCTGCTGAATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCTACTGAACTTTCGCAGAACGCCTGATAGGCTGCTGAATAATG  150

seq1  CACATTCTTTTCCTTTTCATGAAGGAACCACAGCTTAGAGAAGCTGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTTTCCTTTTCATGAAGGAACCACAGCTTAGAGAAGCTGTGAC  200

seq1  CTTGCGCTCTGATATACTGAAGCATGGGCTCATGCAGATTCCACCCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGCTCTGATATACTGAAGCATGGGCTCATGCAGATTCCACCCAGGC  250

seq1  CACAGTGACTGAAGCTCATATGCCTCTAAGTTCCCCTCAGTGCTCATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGACTGAAGCTCATATGCCTCTAAGTTCCCCTCAGTGCTCATCAG  300

seq1  CACTGCGGGAGCGTTATGACATAAATTATCAATGGATTGTTACAAGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCGGGAGCGTTATGACATAAATTATCAATGGATTGTTACAAGCTTA  350

seq1  TTAAGAGTGGAAATACATCCCAATTCCTCAAGCACAAAACCACTCCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTGGAAATACATCCCAATTCCTCAAGCACAAAACCACTCCAGTC  400

seq1  ACTATGCAGGGGTGACCCTCAGAATCAAAGCCCGAAGCCACACCCATCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCAGGGGTGACCCTCAGAATCAAAGCCCGAAGCCACACCCATCGA  450

seq1  ACACTGAAGTGGAGTAAACCATAGCATTTGTTTAGAGAGAAGAATGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAGTGGAGTAAACCATAGCATTTGTTTAGAGAGAAGAATGACCC  500

seq1  AGACCTGTGAGCAGCATTTCAGCTCCTGTAGAACTGAAAAAACAAGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTGAGCAGCATTTCAGCTCCTGTAGAACTGAAAAAACAAGGGAC  550

seq1  AATAAGGAAGCTGAGTCAGAAACAGTACCATTTACAAGTTAATATTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGAAGCTGAGTCAGAAACAGTACCATTTACAAGTTAATATTTAAC  600

seq1  ATGTTCTAGCCTTTGCAGGGCCTCTAGTGCTCTGAGGCAGACGCCAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTAGCCTTTGCAGGGCCTCTAGTGCTCTGAGGCAGACGCCAAAGT  650

seq1  TCTGTGACCAAGATCTGACCATGCAGCAGCTCAGATAAGACCCAGTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACCAAGATCTGACCATGCAGCAGCTCAGATAAGACCCAGTTACA  700

seq1  GTACCAGACAATTCACAGAGAGTGGGCAGCTATTTCCTAGGGTCAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGACAATTCACAGAGAGTGGGCAGCTATTTCCTAGGGTCAGCCAG  750

seq1  GTCCCTTATCAGGTCTTTCTGCCATTTCCCAAGAATCACACTAAACTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTATCAGGTCTTTCTGCCATTTCCCAAGAATCACACTAAACTAAT  800

seq1  AGTATCTACTGGCTCACTAGTACTGCTCCCATGGCCGAGTGAGGGG-AAG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTATCTACTGGCTCACTAGTACTGCTCCCATGGCCGAGTGAGGGGAAAG  850

seq1  GCAGAGGAGGCACAGAAGTGACAGCCATTCTTCTTATACCCTACTGATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAGGCACAGAAGTGACAGCCATTCTTCTTATACCCTACTGATGG  900

seq1  GATGCTGGG-AAGGAGACCCTAGCAGACTCAGGAGTTCCTATTTGTAAAG  948
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGGAAAGGAGACCCTAGCAGACTCAGGAGTTCCTATTTGTAAAG  950

seq1  GGAAGAAGGATGCAGTAGCATTTCTCAGGTTCAGTCATCAAT-GGCAAGC  997
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAAGAAGGATGCAGTAGCATTTCTCAGGTTCAGTCATCAATGGGCAAGC  1000

seq1  AGGCTTAATGAACAACTCATAGGC-TTACCCCTGGCACAAACACTAGGAG  1046
      | ||||||||||| |||||||||| ||||||||||||||||||||| |||
seq2  A-GCTTAATGAAC-ACTCATAGGCTTTACCCCTGGCACAAACACTA-GAG  1047

seq1  AGCATTAG-TGGGGAGGCGGG-AAAAGAG-ACAGCAGTTTGGGTCAGGTC  1093
      |||||||| |||||||||||| ||||||| |||||||||||||||| |||
seq2  AGCATTAGTTGGGGAGGCGGGAAAAAGAGAACAGCAGTTTGGGTCAAGTC  1097

seq1  TCCA-CACTGCAC  1105
      |||| ||||||||
seq2  TCCACCACTGCAC  1110