BAC Information

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BAC

Clone NameB6Ng01-307I13
Chromosome12 (Build37)
Map Location 65,067,524 - 65,199,164
singlet/doubletdoublet
Overlap geneLOC435302
Upstream geneEG382606
Downstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307I13.bB6Ng01-307I13.g
ACCGA100281GA100282
length1,0841,127
definitionB6Ng01-307I13.b B6Ng01-307I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,198,088 - 65,199,164)(65,067,524 - 65,068,660)
sequence
gaattccacaataaggactggttactttatataatgtttccgtactactc
gtaaatcttagcaagaggttaaagaaaggggatatggcagtaagtggctt
tggagagcttctttcaaacttctgtgactctctacaattctctaaggaaa
gattaaagactctgaaagcttgtgccaagtctctttgctcttcacagcag
ttatatatctgcttttcttttgtaacaggggtccaaaatggaggccctat
atactagacaagagctgtgtccctgagatacacaaccaagaaatccagtt
agtatgagcattttgcgtagaaagcaatgtttcagagatgagtcagtgat
acactaaaaggaggctgaagaagtcattggaagttaggagttgctgagac
attttccccctcagggatatagcactgacaaaactttggtctgaatggca
tatgcagaaatccatttgtatataactgtgtactgaagttttaccctcac
tcccaatctcctttatttggggattaaagtattaaaagttatttctcctc
tcctccttgaaactatggagaaattaactagacacttgaaacaaataaaa
gcaaaggccttgttaactataaacccatatttttaggcctctaattgact
agggcttgttttcttttccatgtgaatgttgtaagacatcagtagggaga
ggtaatgaagggccagagcctctacctccaagtccttgagaaatcatgag
gaaaagaacctcccaataccttaggtcacatagagtaggacaaactcgaa
ccatctgataattctgcagaaggcactggagaaaagaaagcagctccttt
aagtttttatttctgttttaaaatgtctctgaagtattagttgacatgaa
agctagaggaagcagtacatagttctcccttcctaatggcatccctttat
gagtcgcattctcttactgaaccaccaatggtgttttcatctttgctatt
tagtgtgcaaaggcaaatatttaaacaaagcagatgatgtaaggcaattt
attatattttttaggttttgtggaaacctatact

gaattccttttgcgggaaatattatttcagattcaggacaaatggatgag
attttataataatatcaatcacattccttttagtgagtttcattttacag
tttaatataggtttggaacatctaaaattttgtacaaacttgtgggttaa
aaatattagtttccttttctttaatacttaatttgaacatattttcatga
atttgcttatcttatgttcttttttatgttatgtgtcaattcaagtgttt
gttaattccgttttacttttatatttcaagattaaatgtattcatttttt
gtcagtgaatagaattctatattagatactagcactctaagccacaccta
gcatttgcctttaaaccttcacaaactgtcaatctccatttcacaaacat
tctgacactgagcttccttagtctagcaaattcagagttcaagtttaaaa
agagagaaggaaggacagttgaactctacttttcatcatcagagtatgaa
ttaggacccaggtatctcaaaggaatgtttattgtcttcagcagagagga
taaaaataagagaaacactagtaatggcactaccaggaagaacgaacaga
aagaatgcaggttaaagaaacatttggcatggaatgagttgctttctcct
cagttaagaatccacatgataacatggatacatgacattgaggttaaatt
gctcaatttgtagaatacctcagtgtattgggcagtacatttttgaactg
aaacagaagcagtacagtccttatgttctaccattacacctctgggtttt
tcacttatgaatatacctgccaacctaatgattcttgcatgcattagaat
ttgcttttgtagagttaagtttatttttctcatcttgctcattcccatga
acatctcagtgtgaactctttgcccagcttcaagagaatgtcacaaaggg
cagctctgtgccacctcagtcagaattcatctgtctcttccaggctacta
tagagcatagcattgatctcatctcatctacatcaaacagacactggtgc
tatttccccagcagagaacatacacatccggatgttatgcttatcaaatg
aatccaaattgaaaccgatgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_65198088_65199164
seq2: B6Ng01-307I13.b_44_1127 (reverse)

seq1  AGTATAGGTT--CACAAAACCT-AAAAATAT-ATAAA-TGCC-TACATCA  44
      ||||||||||  |||||||||| |||||||| ||||| |||| |||||||
seq2  AGTATAGGTTTCCACAAAACCTAAAAAATATAATAAATTGCCTTACATCA  50

seq1  TTCTTGCTTTGTTTAAATATTTGCC-TTGCACACTAAATAGCAAAGATGA  93
      |   ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  T--CTGCTTTGTTTAAATATTTGCCTTTGCACACTAAATAGCAAAGATGA  98

seq1  AAACACCA-TGGTGGTTTCAGTAAGAGAATGCGACTCATAAA-GGATGCC  141
      |||||||| |||||| |||||||||||||||||||||||||| |||||||
seq2  AAACACCATTGGTGG-TTCAGTAAGAGAATGCGACTCATAAAGGGATGCC  147

seq1  ATTAGGAA-GGAGAACTATGTACTGCTTCCTCTAGCTTTCATGTCAACTA  190
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAAGGGAGAACTATGTACTGCTTCCTCTAGCTTTCATGTCAACTA  197

seq1  ATACTTCAGAGACATTTTAAAACAGAAATAAAAACTTAAAGGAGCTGCTT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAGAGACATTTTAAAACAGAAATAAAAACTTAAAGGAGCTGCTT  247

seq1  TCTTTTCTCCAGTGCCTTCTGCAGAATTATCAGATGGTTCGAGTTTGTCC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCCAGTGCCTTCTGCAGAATTATCAGATGGTTCGAGTTTGTCC  297

seq1  TACTCTATGTGACCTAAGGTATTGGGAGGTTCTTTTCCTCATGATTTCTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTATGTGACCTAAGGTATTGGGAGGTTCTTTTCCTCATGATTTCTC  347

seq1  AAGGACTTGGAGGTAGAGGCTCTGGCCCTTCATTACCTCTCCCTACTGAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTGGAGGTAGAGGCTCTGGCCCTTCATTACCTCTCCCTACTGAT  397

seq1  GTCTTACAACATTCACATGGAAAAGAAAACAAGCCCTAGTCAATTAGAGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACAACATTCACATGGAAAAGAAAACAAGCCCTAGTCAATTAGAGG  447

seq1  CCTAAAAATATGGGTTTATAGTTAACAAGGCCTTTGCTTTTATTTGTTTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAATATGGGTTTATAGTTAACAAGGCCTTTGCTTTTATTTGTTTC  497

seq1  AAGTGTCTAGTTAATTTCTCCATAGTTTCAAGGAGGAGAGGAGAAATAAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTAGTTAATTTCTCCATAGTTTCAAGGAGGAGAGGAGAAATAAC  547

seq1  TTTTAATACTTTAATCCCCAAATAAAGGAGATTGGGAGTGAGGGTAAAAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACTTTAATCCCCAAATAAAGGAGATTGGGAGTGAGGGTAAAAC  597

seq1  TTCAGTACACAGTTATATACAAATGGATTTCTGCATATGCCATTCAGACC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTACACAGTTATATACAAATGGATTTCTGCATATGCCATTCAGACC  647

seq1  AAAGTTTTGTCAGTGCTATATCCCTGAGGGGGAAAATGTCTCAGCAACTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGTCAGTGCTATATCCCTGAGGGGGAAAATGTCTCAGCAACTC  697

seq1  CTAACTTCCAATGACTTCTTCAGCCTCCTTTTAGTGTATCACTGACTCAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTCCAATGACTTCTTCAGCCTCCTTTTAGTGTATCACTGACTCAT  747

seq1  CTCTGAAACATTGCTTTCTACGCAAAATGCTCATACTAACTGGATTTCTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAACATTGCTTTCTACGCAAAATGCTCATACTAACTGGATTTCTT  797

seq1  GGTTGTGTATCTCAGGGACACAGCTCTTGTCTAGTATATAGGGCCTCCAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTATCTCAGGGACACAGCTCTTGTCTAGTATATAGGGCCTCCAT  847

seq1  TTTGGACCCCTGTTACAAAAGAAAAGCAGATATATAACTGCTGTGAAGAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACCCCTGTTACAAAAGAAAAGCAGATATATAACTGCTGTGAAGAG  897

seq1  CAAAGAGACTTGGCACAAGCTTTCAGAGTCTTTAATCTTTCCTTAGAGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGACTTGGCACAAGCTTTCAGAGTCTTTAATCTTTCCTTAGAGAA  947

seq1  TTGTAGAGAGTCACAGAAGTTTGAAAGAAGCTCTCCAAAGCCACTTACTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAGAGTCACAGAAGTTTGAAAGAAGCTCTCCAAAGCCACTTACTG  997

seq1  CCATATCCCCTTTCTTTAACCTCTTGCTAAGATTTACGAGTAGTACGGAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCCCTTTCTTTAACCTCTTGCTAAGATTTACGAGTAGTACGGAA  1047

seq1  ACATTATATAAAGTAACCAGTCCTTATTGTGGAATTC  1077
      |||||||||||||||||||||||||||||||||||||
seq2  ACATTATATAAAGTAACCAGTCCTTATTGTGGAATTC  1084


seq1: chr12_65067524_65068660
seq2: B6Ng01-307I13.g_66_1192

seq1  GAATTCCTTTTGCGGGAAATATTATTTCAGATTCAGGACAAATGGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGCGGGAAATATTATTTCAGATTCAGGACAAATGGATGAG  50

seq1  ATTTTATAATAATATCAATCACATTCCTTTTAGTGAGTTTCATTTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATAATATCAATCACATTCCTTTTAGTGAGTTTCATTTTACAG  100

seq1  TTTAATATAGGTTTGGAACATCTAAAATTTTGTACAAACTTGTGGGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATAGGTTTGGAACATCTAAAATTTTGTACAAACTTGTGGGTTAA  150

seq1  AAATATTAGTTTCCTTTTCTTTAATACTTAATTTGAACATATTTTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAGTTTCCTTTTCTTTAATACTTAATTTGAACATATTTTCATGA  200

seq1  ATTTGCTTATCTTATGTTCTTTTTTATGTTATGTGTCAATTCAAGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTATCTTATGTTCTTTTTTATGTTATGTGTCAATTCAAGTGTTT  250

seq1  GTTAATTCCGTTTTACTTTTATATTTCAAGATTAAATGTATTCATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTCCGTTTTACTTTTATATTTCAAGATTAAATGTATTCATTTTTT  300

seq1  GTCAGTGAATAGAATTCTATATTAGATACTAGCACTCTAAGCCACACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAATAGAATTCTATATTAGATACTAGCACTCTAAGCCACACCTA  350

seq1  GCATTTGCCTTTAAACCTTCACAAACTGTCAATCTCCATTTCACAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCCTTTAAACCTTCACAAACTGTCAATCTCCATTTCACAAACAT  400

seq1  TCTGACACTGAGCTTCCTTAGTCTAGCAAATTCAGAGTTCAAGTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACTGAGCTTCCTTAGTCTAGCAAATTCAGAGTTCAAGTTTAAAA  450

seq1  AGAGAGAAGGAAGGACAGTTGAACTCTACTTTTCATCATCAGAGTATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGGAAGGACAGTTGAACTCTACTTTTCATCATCAGAGTATGAA  500

seq1  TTAGGACCCAGGTATCTCAAAGGAATGTTTATTGTCTTCAGCAGAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACCCAGGTATCTCAAAGGAATGTTTATTGTCTTCAGCAGAGAGGA  550

seq1  TAAAAATAAGAGAAACACTAGTAATGGCACTACCAGGAAGAACGAACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAGAGAAACACTAGTAATGGCACTACCAGGAAGAACGAACAGA  600

seq1  AAGAATGCAGGTTAAAGAAACATTTGGCATGGAATGAGTTGCTTTCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCAGGTTAAAGAAACATTTGGCATGGAATGAGTTGCTTTCTCCT  650

seq1  CAGTTAAGAATCCACATGATAACATGGATACATGACATTGAGGTTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGAATCCACATGATAACATGGATACATGACATTGAGGTTAAATT  700

seq1  GCTCAATTTGTAGAATACCTCAGTGTATTGGGCAGTACATTTTTGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATTTGTAGAATACCTCAGTGTATTGGGCAGTACATTTTTGAACTG  750

seq1  AAACAGAAGCAGTACAGTCCTTATGTTCTACCATTACACCTCTGGGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGCAGTACAGTCCTTATGTTCTACCATTACACCTCTGGGTTTT  800

seq1  TCACTTATGAATATACCTGCCAACCTAATGATTCTTGCATGCATTAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATGAATATACCTGCCAACCTAATGATTCTTGCATGCATTAGAAT  850

seq1  TTGCTTTTGTAGAGTTAAGTTTATTTTTCTCATCTTGCTCATTCCCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGTAGAGTTAAGTTTATTTTTCTCATCTTGCTCATTCCCATGA  900

seq1  ACATCTCAGTGTGAACTCTTTGCCCAGCTTCAAGAGAATGTCACAAAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAGTGTGAACTCTTTGCCCAGCTTCAAGAGAATGTCACAAAGGG  950

seq1  CAGCTCTGTGCCACCTCAGGTCAGAATTCATCTGTCTCTTCCCAGGCTAC  1000
      |||||||||||||||||| ||||||||||||||||||||| |||||||| 
seq2  CAGCTCTGTGCCACCTCA-GTCAGAATTCATCTGTCTCTT-CCAGGCTA-  997

seq1  CTATAGAGCAATAGCATTGATCTCATCTCATCTTACATTCAAACAGACAC  1050
      ||||||||| |||||||||||||||||||||| |||| ||||||||||||
seq2  CTATAGAGC-ATAGCATTGATCTCATCTCATC-TACA-TCAAACAGACAC  1044

seq1  TGTTTGCTTAATTTCCCCAGGCCAGAG-ACATACACATCGGGATG-TATG  1098
      ||  ||||  ||||||||||  ||||| ||||||||||| ||||| ||||
seq2  TG-GTGCT--ATTTCCCCAG--CAGAGAACATACACATCCGGATGTTATG  1089

seq1  CTTATAAAAATGGAATCAAAATGAAAACGAAGGGGGGGG  1137
      |||||  ||||| |  |||| ||||| ||| ||||||||
seq2  CTTAT-CAAATGAATCCAAATTGAAACCGATGGGGGGGG  1127


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