BAC Information

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BAC

Clone NameB6Ng01-307P20
Chromosome12 (Build37)
Map Location 44,403,399 - 44,523,235
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307P20.bB6Ng01-307P20.g
ACCGA100612GA100613
length1,1601,109
definitionB6Ng01-307P20.b B6Ng01-307P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,403,399 - 44,404,573)(44,522,124 - 44,523,235)
sequence
gaattctgtattctttttcataaaaattgacaaaagataataaatccaaa
gctcaatgtccaccatccatccacatctgtaaatatagcagaagtgattt
ataatcacaattctatgaatgcctctaccatctgatttttgaattatgcc
tctcaaaatatattgaatcaatcttgaagagttatatgacagtgaagagc
cttgaaagtgtatctgaatcagcctgttggctttagctgcaaaggcataa
gagtcatgctggacaggtgagccctattattcaataactacacagaaaca
ggctccgcatgttctgttggaaatgaaaccattttataattctatgacct
ttgctatcaaagcagtccctcaatatctgtgaatggatttgtgctgcagt
ttcttaaattgatttattcagtggaaatagaggtcaacctaacactatac
atttaggattctatctgtgagttcaatgtaatgacatgaaatgataagaa
gtctcacttaaattcctagtgttaaaattaatattcaaacattagacaca
tactagtttcagttttccatcgaagcaaaataaccattcacttatccaca
ttaatactattctatattacaggattgtagtttttaagcttaagtgctga
gcgacaatgccctgtctcagttttacattcccaggaacaaattgtgagtt
tttacttggatctcagtaaattaatgttcattagtgtttttggatatgat
ttccttacttacaaggaaatggatatgatttacttacttacaagtctact
tatagtagattccttattttgggagatttgcacatgttagtattgcagaa
aattttgaaaaagaataaccttttagcctagttgaaaaaagacagaatgc
tttgttattgcttatttctcattgtcatactacactgaacctgcaaagag
acatcacacatatcatacaaaatttcttagttgtagtactactttgtgat
gtgaaacaaacatcagaaaaaagaaaaaagaaaaaagaaaaaagaaaaaa
aaaacacagatgctcttctgactaaactattaggaagaagtgtatgatca
cacttccacaaagatccaactgtgaatgtccaatccatcatccaaatatt
tcaaggcatg

gaattctggattaatatttttctcctccccatttttaattgcctcaaagc
atttttcaatatgtactatcttaagtatgaaaaagataaatggtgtgatg
attaaggaaaaactctttcttatttagtgaccacattaaaaacattggca
aatatttatgatcacagagacttaattattgattttcacttatatattta
aaaccatttataacatttgatttataaaaactatgcaaaggcaagctaaa
tcaaaatcagaactcaagttatgtattactctgttgataaattggaactt
gtcagcatatcaatgaattaatgttttgtataaaccttatacacaaaagt
gtttatctgttttgatgcaattgttttatactctaagtctaaagtagttc
acaaatttaacagtaatgaggagatgctcacaccacaagaaaaaaaaagg
ttacttgggagaaccttgtgagctcctttttaaagaaatatatttcctgt
cctccatgatctcactcatcacaattagatttttagcccacctttgtcct
ggaatttttatttgaacacattagaaagctgaacatagtatcccattatt
ccagaggggaaagactgaacatacagattgattggcaaaggagtcagaat
gggcaaagaaaatagtctattgacaatcagaaattaaaaggaacagaagg
tatggctcctttggctcctgaaatataatctctgtacagaaaaaatgaag
gcagcacaagctgttctgtgtacaactagtatggagccagggacattctg
gggcttaatatgattacaatgttgagtgtgtctagttgtgcttttatcat
taattctatataaacatttttttcaaataaaaataaatttagttttttac
actaaactgctttgggaaaacttttaaactgggccaacttctgtaaaaca
atatgcaacagactattagaaataaatattataaatttgttaaaaacaaa
atctttcataaaaaaaataccttgatttaaaggtagagttaaaatgcaaa
taaaaaatagctatacgcgacaggacatccatttagtgcctatactaaca
ctgagtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_44403399_44404573
seq2: B6Ng01-307P20.b_45_1204

seq1  GAATTCTGTATTCTTTTTCATAAAAATTGACAAAAGATAATAAATCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATTCTTTTTCATAAAAATTGACAAAAGATAATAAATCCAAA  50

seq1  GCTCAATGTCCACCATCCATCCACATCTGTAAATATAGCAGAAGTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATGTCCACCATCCATCCACATCTGTAAATATAGCAGAAGTGATTT  100

seq1  ATAATCACAATTCTATGAATGCCTCTACCATCTGATTTTTGAATTATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACAATTCTATGAATGCCTCTACCATCTGATTTTTGAATTATGCC  150

seq1  TCTCAAAATATATTGAATCAATCTTGAAGAGTTATATGACAGTGAAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAATATATTGAATCAATCTTGAAGAGTTATATGACAGTGAAGAGC  200

seq1  CTTGAAAGTGTATCTGAATCAGCCTGTTGGCTTTAGCTGCAAAGGCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGTGTATCTGAATCAGCCTGTTGGCTTTAGCTGCAAAGGCATAA  250

seq1  GAGTCATGCTGGACAGGTGAGCCCTATTATTCAATAACTACACAGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGCTGGACAGGTGAGCCCTATTATTCAATAACTACACAGAAACA  300

seq1  GGCTCCGCATGTTCTGTTGGAAATGAAACCATTTTATAATTCTATGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGCATGTTCTGTTGGAAATGAAACCATTTTATAATTCTATGACCT  350

seq1  TTGCTATCAAAGCAGTCCCTCAATATCTGTGAATGGATTTGTGCTGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCAAAGCAGTCCCTCAATATCTGTGAATGGATTTGTGCTGCAGT  400

seq1  TTCTTAAATTGATTTATTCAGTGGAAATAGAGGTCAACCTAACACTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAATTGATTTATTCAGTGGAAATAGAGGTCAACCTAACACTATAC  450

seq1  ATTTAGGATTCTATCTGTGAGTTCAATGTAATGACATGAAATGATAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGATTCTATCTGTGAGTTCAATGTAATGACATGAAATGATAAGAA  500

seq1  GTCTCACTTAAATTCCTAGTGTTAAAATTAATATTCAAACATTAGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTTAAATTCCTAGTGTTAAAATTAATATTCAAACATTAGACACA  550

seq1  TACTAGTTTCAGTTTTCCATCGAAGCAAAATAACCATTCACTTATCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTTTCAGTTTTCCATCGAAGCAAAATAACCATTCACTTATCCACA  600

seq1  TTAATACTATTCTATATTACAGGATTGTAGTTTTTAAGCTTAAGTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTATTCTATATTACAGGATTGTAGTTTTTAAGCTTAAGTGCTGA  650

seq1  GCGACAATGCCCTGTCTCAGTTTTACATTCCCAGGAACAAATTGTGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACAATGCCCTGTCTCAGTTTTACATTCCCAGGAACAAATTGTGAGTT  700

seq1  TTTACTTGGATCTCAGTAAATTAATGTTCATTAGTGTTTTTGGATATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGGATCTCAGTAAATTAATGTTCATTAGTGTTTTTGGATATGAT  750

seq1  TTCCTTACTTACAAGGAAATGGATATGATTTACTTACTTACAAGTCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACTTACAAGGAAATGGATATGATTTACTTACTTACAAGTCTACT  800

seq1  TATAGTAGATTCCTTATTTTGGGAGATTTGCACATGTTAGTATTGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAGATTCCTTATTTTGGGAGATTTGCACATGTTAGTATTGCAGAA  850

seq1  AATTTTGAAAAAGAATAACCTTTTAGCCTAGTTGAAAAAAGACAGAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAAAAAGAATAACCTTTTAGCCTAGTTGAAAAAAGACAGAATGC  900

seq1  TTTGTTATTGCTTATTTCTCATTGTCATACTACACTGAACCTGCAAAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTGCTTATTTCTCATTGTCATACTACACTGAACCTGCAAAGAG  950

seq1  ACATCACACATATCATACAAAATTTCTTAGTTGTAGTTACTACTTTGTTG  1000
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  ACATCACACATATCATACAAAATTTCTTAGTTGTAG-TACTACTTTG-TG  998

seq1  ATGTGAAACAAACATCCAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAA  1050
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  ATGTGAAACAAACAT-CAGAAAAAAGAAAAAAGAAAAAAGAAAAAAG-AA  1046

seq1  AAAAAAAACACAGATGCTC-TCTGACCAAAAACTATTTGGGAAGGAAAGT  1099
      ||||||||||||||||||| ||||||   |||||| || |||||  ||||
seq2  AAAAAAAACACAGATGCTCTTCTGAC--TAAACTA-TTAGGAAG--AAGT  1091

seq1  GTTAATTGGATTCACACTT-CACAAAGATCACAACTGTGGATAGTCACAA  1148
      ||  ||  || |||||||| |||||||||| |||||||| || ||| |||
seq2  GT--AT--GA-TCACACTTCCACAAAGATC-CAACTGTGAAT-GTC-CAA  1133

seq1  TCCATCATCAAAATAATTCAAGGCATG  1175
      ||||||||| ||||| |||||||||||
seq2  TCCATCATCCAAATATTTCAAGGCATG  1160


seq1: chr12_44522124_44523235
seq2: B6Ng01-307P20.g_63_1171 (reverse)

seq1  TATACTTCAGTG-TAGTATA-GCACTAAAATGAATGTCCTGTCCCTGTAT  48
      ||||| |||||| ||||||| ||||| ||||| |||||||||| | ||||
seq2  TATAC-TCAGTGTTAGTATAGGCACT-AAATGGATGTCCTGTCGC-GTAT  47

seq1  AGCTTATTTTTTATTTGCATTTTAACTCCTACCTTTTAAATCAAGGTA--  96
      ||| ||||||||||||||||||||||| ||||| ||||||||||||||  
seq2  AGC-TATTTTTTATTTGCATTTTAACT-CTACC-TTTAAATCAAGGTATT  94

seq1  TTTTTTATGAAAGATTTTGTTTTTAAACAAATTTATAATATTTTATTTCT  146
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TTTTTTATGAAAGATTTTGTTTTT-AACAAATTTATAATA-TTTATTTCT  142

seq1  AATAGTTCTGTTGCATATTGTTTTACAGAAGTTGG-CCAGTTTAAAAGTT  195
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATAG-TCTGTTGCATATTGTTTTACAGAAGTTGGCCCAGTTTAAAAGTT  191

seq1  TTCCCAAAGCAGTTTAGTGTAAAAAACTAAATTTATTTTTATTTG-AAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCCCAAAGCAGTTTAGTGTAAAAAACTAAATTTATTTTTATTTGAAAAA  241

seq1  AATGTTTATATAGAATTAATGATAAAAGCACAACTAGACACACTCAACAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATATAGAATTAATGATAAAAGCACAACTAGACACACTCAACAT  291

seq1  TGTAATCATATTAAGCCCCAGAATGTCCCTGGCTCCATACTAGTTGTACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCATATTAAGCCCCAGAATGTCCCTGGCTCCATACTAGTTGTACA  341

seq1  CAGAACAGCTTGTGCTGCCTTCATTTTTTCTGTACAGAGATTATATTTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCTTGTGCTGCCTTCATTTTTTCTGTACAGAGATTATATTTCA  391

seq1  GGAGCCAAAGGAGCCATACCTTCTGTTCCTTTTAATTTCTGATTGTCAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAAAGGAGCCATACCTTCTGTTCCTTTTAATTTCTGATTGTCAAT  441

seq1  AGACTATTTTCTTTGCCCATTCTGACTCCTTTGCCAATCAATCTGTATGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTTTCTTTGCCCATTCTGACTCCTTTGCCAATCAATCTGTATGT  491

seq1  TCAGTCTTTCCCCTCTGGAATAATGGGATACTATGTTCAGCTTTCTAATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTTCCCCTCTGGAATAATGGGATACTATGTTCAGCTTTCTAATG  541

seq1  TGTTCAAATAAAAATTCCAGGACAAAGGTGGGCTAAAAATCTAATTGTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAATAAAAATTCCAGGACAAAGGTGGGCTAAAAATCTAATTGTGA  591

seq1  TGAGTGAGATCATGGAGGACAGGAAATATATTTCTTTAAAAAGGAGCTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGATCATGGAGGACAGGAAATATATTTCTTTAAAAAGGAGCTCA  641

seq1  CAAGGTTCTCCCAAGTAACCTTTTTTTTTCTTGTGGTGTGAGCATCTCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTCTCCCAAGTAACCTTTTTTTTTCTTGTGGTGTGAGCATCTCCT  691

seq1  CATTACTGTTAAATTTGTGAACTACTTTAGACTTAGAGTATAAAACAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGTTAAATTTGTGAACTACTTTAGACTTAGAGTATAAAACAATT  741

seq1  GCATCAAAACAGATAAACACTTTTGTGTATAAGGTTTATACAAAACATTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAAACAGATAAACACTTTTGTGTATAAGGTTTATACAAAACATTA  791

seq1  ATTCATTGATATGCTGACAAGTTCCAATTTATCAACAGAGTAATACATAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGATATGCTGACAAGTTCCAATTTATCAACAGAGTAATACATAA  841

seq1  CTTGAGTTCTGATTTTGATTTAGCTTGCCTTTGCATAGTTTTTATAAATC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCTGATTTTGATTTAGCTTGCCTTTGCATAGTTTTTATAAATC  891

seq1  AAATGTTATAAATGGTTTTAAATATATAAGTGAAAATCAATAATTAAGTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATAAATGGTTTTAAATATATAAGTGAAAATCAATAATTAAGTC  941

seq1  TCTGTGATCATAAATATTTGCCAATGTTTTTAATGTGGTCACTAAATAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCATAAATATTTGCCAATGTTTTTAATGTGGTCACTAAATAAG  991

seq1  AAAGAGTTTTTCCTTAATCATCACACCATTTATCTTTTTCATACTTAAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTTTTCCTTAATCATCACACCATTTATCTTTTTCATACTTAAGA  1041

seq1  TAGTACATATTGAAAAATGCTTTGAGGCAATTAAAAATGGGGAGGAGAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACATATTGAAAAATGCTTTGAGGCAATTAAAAATGGGGAGGAGAAA  1091

seq1  AATATTAATCCAGAATTC  1112
      ||||||||||||||||||
seq2  AATATTAATCCAGAATTC  1109


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