BAC Information

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BAC

Clone NameB6Ng01-308D20
Chromosome12 (Build37)
Map Location 101,353,122 - 101,503,385
singlet/doubletdoublet
Overlap genePsmc1, BC002230, Calm1
Upstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13
Downstream geneTtc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308D20.bB6Ng01-308D20.g
ACCGA100793GA100794
length1,1661,093
definitionB6Ng01-308D20.b B6Ng01-308D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,502,220 - 101,503,385)(101,353,122 - 101,354,216)
sequence
gaattccaggggggcgttcactcaagtcctccaaggtaccagagaggagg
tgacaggaagccatagagaaggctattgcagacgcagcaaagatgatgac
acaggcctgccagctacttggtgggacctgagggtgaggatgcattcagg
cctatgatgagacctcacagggctgaggtgaaaggcccctgaacattcgc
agagcagttcccacacaggtccacagccttcttccactggccagtgggtt
gtcatcccacccatgtcatcgagagctgatgggacaggtgtgaggcagca
gctcacctttaactccttctgccattttggccggtggagaatctggtggc
aaaagcaaaccccaagagccttgtcctgggctaaatcctctcctgaggaa
tcagataccccctcccctcgattacttatttccctcttgaggaaaacata
aaataaaagcaactcatagcagcagagaaatcatggcacctcatgtggca
gctggttctattccatccacggtgcggagccagagagagatggttgctgc
tgctcagactgctctccttggttcagtccaggatctctgcctgaatgtgg
aagggtgctgtccacatttagggtgagtcttcataccttcattaagctaa
tccagaaaaccctttgctagcatgcccagaggtttgtcacccgggtgatt
ctagatctagatcctggcacattagtaatcagtgttgaccatcacgaccc
ccaaatgaatggatctgcagcccctgtaaccctgaacctcccccacccga
agggtccactggggtttcagtcaaatatatatccctggttcctgatgtct
catgatcagagggactttgtggctgtgtccccacaatgcctaggcatgtg
ggtcagacaaaccagctctttctggtaacaaggaggcgagaagacaggat
tggaaggcagacaggaaggcaggtggtccgtggaaggaagaaaagacttc
tctgattacaagaaaagtgggcactgaggacatccagtcacttccctttt
ttctcagcctccggtggtaccaaatcatttataggtcctcttgacttcat
aaaaaacaactccatgtacctctttccacaaccttgactttctctcggat
caatgaagtggccagc
gaattcattagaaaccaggaacagatgaaaccattagaagaaaagcaaga
ggtgagtggagaaggttctatagtcttctttactgagtgagttctgttaa
gaacaaaaactgtgataagtgagagtcatgggtgtcaactgtgacacttc
tgactggccagcttttaaagccagggagagggcgcagcaggtaaaagtac
tgactacactctggcaaccaagtatggaaaggtaaaaaatccagatgagg
tgcacatctgtcatcctggcaccctacagcaagacgagagtcagagacct
gacaaccacccagaagttctctggatagccaggagtacacacacacagca
agttattctctggtctctgcacgctcagatgcacatccacagaaagtgag
tgaatgagaaaagaaaacatttgctgccttgtcattccaggcagatactc
tgtaaatgcatcatctgccttacgggctcatctgctttttcttcttggct
attattaggaggaaagatcaaaagtggatgatctcagggggacccccatg
tctgtaggaaccttggaagagatcattgatgataatcacgccattgtgtc
cacatctgtgggctcagaacactacgtcagcatcctgtcgtttgtagaca
aggatctgctggaaccaggctgctccgtcctgctcaaccacaaggtgagc
cactggcctataaggaagcccggtaggagtatgttcttggtgttagacct
ggctgctcgggctggaaggggaccaccaaagcactcacagaaatgggggg
aaagaaactggaattgcttgccctagacaaattgacaagaactcccggtc
acacattaagacttgggtcctttgtaggtgcatgctgtgataggggtgct
aatggatgacacggatcccctggtcacagtgatgaaagtggaaaaggccc
ctcaggagacctacgcagatattgggggactggacaccagaatccaagaa
attaaagtatggtggggaccgggtcttggctttccagagtttggtttctt
atagtgtccttgtttgatgcttgagtgaccttccatgttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101502220_101503385
seq2: B6Ng01-308D20.b_46_1211 (reverse)

seq1  GCTGCCCAC-TCATTGGTCCCCGAGAGAAAGCCA--GTTGTGG-AAGAGG  46
      |||| |||| |||||| |  ||||||||||| ||  ||||||| ||||||
seq2  GCTGGCCACTTCATTGAT--CCGAGAGAAAGTCAAGGTTGTGGAAAGAGG  48

seq1  TACATGGAAGTTTGTTTTTATTGAGGTCAAGGAAGACCCTATAAAATGAA  96
      ||||||||   ||||||||  ||| ||||||  ||  ||||| ||||| |
seq2  TACATGGA--GTTGTTTTTTATGAAGTCAAG--AGGACCTAT-AAATG-A  92

seq1  TTTGGTACCACCGGAGGCTGGAGAAAAAGGGAGTTGGCTGGATGTTCTTC  146
      ||||||||||||||||||||   |||||||||  || ||||||| || ||
seq2  TTTGGTACCACCGGAGGCTGAGAAAAAAGGGAAGTGACTGGATG-TCCTC  141

seq1  AGTGCCCACTTTTC-TGTAATCAGAG-AGTCTTTTCTTCC-TCCACGGAC  193
      |||||||||||||| ||||||||||| ||||||||||||| |||||||||
seq2  AGTGCCCACTTTTCTTGTAATCAGAGAAGTCTTTTCTTCCTTCCACGGAC  191

seq1  CACCCTGCCTCCCTGTCTTGCCTTCCAATCCTGTCTTCTCGCCTCCTTG-  242
      || ||||||| |||||| ||||||||||||||||||||||||||||||| 
seq2  CA-CCTGCCTTCCTGTC-TGCCTTCCAATCCTGTCTTCTCGCCTCCTTGT  239

seq1  TACCAG-AAGAGCTGGTTTGTCTGACCCACATGCCTAGGCA-TGTGGGGA  290
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  TACCAGAAAGAGCTGGTTTGTCTGACCCACATGCCTAGGCATTGTGGGGA  289

seq1  CACAGCCAC-AAGTCCCTCTGATCATGAGACATCAGGAACCAGGGATATA  339
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCACAAAGTCCCTCTGATCATGAGACATCAGGAACCAGGGATATA  339

seq1  TATTTGACTGAAACCCCAGTGGACCCTTCGGGTGGGGGAGGTTCAGGGTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACTGAAACCCCAGTGGACCCTTCGGGTGGGGGAGGTTCAGGGTT  389

seq1  ACAGGGGCTGCAGATCCATTCATTTGGGGGTCGTGATGGTCAACACTGAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGCTGCAGATCCATTCATTTGGGGGTCGTGATGGTCAACACTGAT  439

seq1  TACTAATGTGCCAGGATCTAGATCTAGAATCACCCGGGTGACAAACCTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGTGCCAGGATCTAGATCTAGAATCACCCGGGTGACAAACCTCT  489

seq1  GGGCATGCTAGCAAAGGGTTTTCTGGATTAGCTTAATGAAGGTATGAAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGCTAGCAAAGGGTTTTCTGGATTAGCTTAATGAAGGTATGAAGA  539

seq1  CTCACCCTAAATGTGGACAGCACCCTTCCACATTCAGGCAGAGATCCTGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCTAAATGTGGACAGCACCCTTCCACATTCAGGCAGAGATCCTGG  589

seq1  ACTGAACCAAGGAGAGCAGTCTGAGCAGCAGCAACCATCTCTCTCTGGCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCAAGGAGAGCAGTCTGAGCAGCAGCAACCATCTCTCTCTGGCT  639

seq1  CCGCACCGTGGATGGAATAGAACCAGCTGCCACATGAGGTGCCATGATTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACCGTGGATGGAATAGAACCAGCTGCCACATGAGGTGCCATGATTT  689

seq1  CTCTGCTGCTATGAGTTGCTTTTATTTTATGTTTTCCTCAAGAGGGAAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGCTATGAGTTGCTTTTATTTTATGTTTTCCTCAAGAGGGAAAT  739

seq1  AAGTAATCGAGGGGAGGGGGTATCTGATTCCTCAGGAGAGGATTTAGCCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCGAGGGGAGGGGGTATCTGATTCCTCAGGAGAGGATTTAGCCC  789

seq1  AGGACAAGGCTCTTGGGGTTTGCTTTTGCCACCAGATTCTCCACCGGCCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGGCTCTTGGGGTTTGCTTTTGCCACCAGATTCTCCACCGGCCA  839

seq1  AAATGGCAGAAGGAGTTAAAGGTGAGCTGCTGCCTCACACCTGTCCCATC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAGAAGGAGTTAAAGGTGAGCTGCTGCCTCACACCTGTCCCATC  889

seq1  AGCTCTCGATGACATGGGTGGGATGACAACCCACTGGCCAGTGGAAGAAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCGATGACATGGGTGGGATGACAACCCACTGGCCAGTGGAAGAAG  939

seq1  GCTGTGGACCTGTGTGGGAACTGCTCTGCGAATGTTCAGGGGCCTTTCAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGACCTGTGTGGGAACTGCTCTGCGAATGTTCAGGGGCCTTTCAC  989

seq1  CTCAGCCCTGTGAGGTCTCATCATAGGCCTGAATGCATCCTCACCCTCAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCTGTGAGGTCTCATCATAGGCCTGAATGCATCCTCACCCTCAG  1039

seq1  GTCCCACCAAGTAGCTGGCAGGCCTGTGTCATCATCTTTGCTGCGTCTGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCAAGTAGCTGGCAGGCCTGTGTCATCATCTTTGCTGCGTCTGC  1089

seq1  AATAGCCTTCTCTATGGCTTCCTGTCACCTCCTCTCTGGTACCTTGGAGG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCTTCTCTATGGCTTCCTGTCACCTCCTCTCTGGTACCTTGGAGG  1139

seq1  ACTTGAGTGAACGCCCCCCTGGAATTC  1166
      |||||||||||||||||||||||||||
seq2  ACTTGAGTGAACGCCCCCCTGGAATTC  1166

seq1: chr12_101353122_101354216
seq2: B6Ng01-308D20.g_67_1159

seq1  GAATTCATTAGAAACCAGGAACAGATGAAACCATTAGAAGAAAAGCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGAAACCAGGAACAGATGAAACCATTAGAAGAAAAGCAAGA  50

seq1  GGTGAGTGGAGAAGGTTCTATAGTCTTCTTTACTGAGTGAGTTCTGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGGAGAAGGTTCTATAGTCTTCTTTACTGAGTGAGTTCTGTTAA  100

seq1  GAACAAAAACTGTGATAAGTGAGAGTCATGGGTGTCAACTGTGACACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAAACTGTGATAAGTGAGAGTCATGGGTGTCAACTGTGACACTTC  150

seq1  TGACTGGCCAGCTTTTAAAGCCAGGGAGAGGGCGCAGCAGGTAAAAGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCCAGCTTTTAAAGCCAGGGAGAGGGCGCAGCAGGTAAAAGTAC  200

seq1  TGACTACACTCTGGCAACCAAGTATGGAAAGGTAAAAAATCCAGATGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACACTCTGGCAACCAAGTATGGAAAGGTAAAAAATCCAGATGAGG  250

seq1  TGCACATCTGTCATCCTGGCACCCTACAGCAAGACGAGAGTCAGAGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATCTGTCATCCTGGCACCCTACAGCAAGACGAGAGTCAGAGACCT  300

seq1  GACAACCACCCAGAAGTTCTCTGGATAGCCAGGAGTACACACACACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCACCCAGAAGTTCTCTGGATAGCCAGGAGTACACACACACAGCA  350

seq1  AGTTATTCTCTGGTCTCTGCACGCTCAGATGCACATCCACAGAAAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCTCTGGTCTCTGCACGCTCAGATGCACATCCACAGAAAGTGAG  400

seq1  TGAATGAGAAAAGAAAACATTTGCTGCCTTGTCATTCCAGGCAGATACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAGAAAAGAAAACATTTGCTGCCTTGTCATTCCAGGCAGATACTC  450

seq1  TGTAAATGCATCATCTGCCTTACGGGCTCATCTGCTTTTTCTTCTTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGCATCATCTGCCTTACGGGCTCATCTGCTTTTTCTTCTTGGCT  500

seq1  ATTATTAGGAGGAAAGATCAAAAGTGGATGATCTCAGGGGGACCCCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGGAGGAAAGATCAAAAGTGGATGATCTCAGGGGGACCCCCATG  550

seq1  TCTGTAGGAACCTTGGAAGAGATCATTGATGATAATCACGCCATTGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGAACCTTGGAAGAGATCATTGATGATAATCACGCCATTGTGTC  600

seq1  CACATCTGTGGGCTCAGAACACTACGTCAGCATCCTGTCGTTTGTAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTGGGCTCAGAACACTACGTCAGCATCCTGTCGTTTGTAGACA  650

seq1  AGGATCTGCTGGAACCAGGCTGCTCCGTCCTGCTCAACCACAAGGTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGCTGGAACCAGGCTGCTCCGTCCTGCTCAACCACAAGGTGAGC  700

seq1  CACTGGCCTATAAGGAAGCCCGGTAGGAGTATGTTCTTGGTGTTAGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCTATAAGGAAGCCCGGTAGGAGTATGTTCTTGGTGTTAGACCT  750

seq1  GGCTGCTCGGGCTGGAAGGGGACCACCAAAGCACTCACAGAAAT-GGGGG  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCTGCTCGGGCTGGAAGGGGACCACCAAAGCACTCACAGAAATGGGGGG  800

seq1  AAAGAAACTGGAATTGCTTGCCCTAGACAAATTGACAAGAACTCCCGGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACTGGAATTGCTTGCCCTAGACAAATTGACAAGAACTCCCGGTC  850

seq1  ACACATTAAGACTT-GGTCCTTTGTAGGTGCATGCTGTGATAGGGGTGCT  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACACATTAAGACTTGGGTCCTTTGTAGGTGCATGCTGTGATAGGGGTGCT  900

seq1  AATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTGGAAAAGGCCC  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATGGATGACACGGATCCCCTGGTCACAGTGATGAAAGTGGAAAAGGCCC  950

seq1  CCCAGGAGACCTACGCAGATATTGGGGGACTGGACAACCAG-ATCCAAGA  997
      | ||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  CTCAGGAGACCTACGCAGATATTGGGGGACTGGAC-ACCAGAATCCAAGA  999

seq1  AATTAAGGTATGGTGGGGACCGGGTC-TGGGTTTCCAGAGTTTTGGTTTC  1046
      |||||| ||||||||||||||||||| ||| ||||||||| |||||||||
seq2  AATTAAAGTATGGTGGGGACCGGGTCTTGGCTTTCCAGAG-TTTGGTTTC  1048

seq1  TTATAGTTGTCCTGTTTGGATGCTTTGGAGTTGACTTCCATGTTTGTTT  1095
      |||||| ||||||  || |||||||  ||||   |||||||| ||||||
seq2  TTATAG-TGTCCTTGTTTGATGCTT--GAGTGACCTTCCATG-TTGTTT  1093