BAC Information

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BAC

Clone NameB6Ng01-308M02
Chromosome12 (Build37)
Map Location 35,648,540 - 35,791,702
singlet/doubletdoublet
Overlap genePrps1l1, Snx13
Upstream geneHdac9, 4921508M14Rik
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308M02.bB6Ng01-308M02.g
ACCGA101175GA101176
length1,194698
definitionB6Ng01-308M02.b B6Ng01-308M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,790,492 - 35,791,702)(35,648,540 - 35,649,235)
sequence
gaattctaagactactcactatctggctcttcagattcaaacaaagaaac
tcaaaataaagatttttctcattggccattcaagaaaaaaaagtcatcta
catttctgtaattaagttattacttccataatatcattttagtaactatt
ctacttttcaaaaaaacctgcatgcaaacaaaaataatttttcaagaaac
aaaatattagtacctttctttgaatgtcatcaaagatttctggagttggg
tcttcatgattcaaagtatctgctagttttgccactaaatagtcatcaac
agtaactcttggagatgcctaaaggagaagaaaatgttctttgtaatttc
taatatcagtaagcactaatagaagttaataacagagtcttatcattaat
tctttaattaattagttaattaattagtttatttattggttttttgagac
agggtttctctgtgtagccctggctgtcctggaacttactttgtagatca
ggctggccttgaactcagaaatccgcctgcctctgcctcccgaatgctgg
gattaaaggcgtgcgccaccacgcccggctcgaatcatattatttaatgg
aaccagcacttcagaatcactggtttctaaatgaaactttaatatttaag
aaagctaaaagacctatagtgttttgtccattcaatagtttgcaggaaac
tgacaaagttttttttaaaagttatttactttaaatgtctaagtattctt
ttgttctctgtatcacaggtgttcctagtgcccagagttcagaagagggt
gttgtaccccatgagaatagacttacaggcagttgtgggccgccctgtgg
gtgctgtggatagatctaggttcctcaaaaatcagccagtgctcctacat
aataagtcatctctccagcccttgcaggcagatttaattcttgattttta
ctgagcaaatttcctcttactaggccttactccccaattgtgaaatggag
ataattctacataaggttattcagacccacattaggattataggactatt
taagaaaataactggtagaggtggtggcacacagataatactgtcatcag
gagtaaatcagtcaggcaatgattagttagatgtagattatgactgacta
ttgaccaggtactttcgattgattgattacattacctggaaatt

gaattccctccatttgtgttttctttattcctttgtttgtctgtttgttt
ctatttttaggtcttgaacagtctccttcatctgtttgttttgccttggc
ttcctttaagggatttgttgattccctccattttttatttgttttttttt
cctcaattccccttaatgattgttttcatttcttttttaaggaactctat
tcatcgtcataaagttggttttaggtaattttcttgtgtttcagctaaat
ttaaatatttcatcttgttttcttaggatagctgggctctggtggtatca
tattgacttggatgttgttgattattttattacactggggtttaggcatc
tgggtttggggtggttatgggtatagaagctgatttctgagattgtcttt
gttggattggtgttttgttccttggtttctgttttgttttgttgttgttt
tgtttcttttgttttgcctgaatttctgatggctggcttggctcctgaac
cactaaggagtctgatcaagttgggaactggacttttggggactagcttg
gcctttggtgcagcagggagtctctgttcttctggttggtatgtcctgcg
cctgttctcctgactggtgtggcctgtacctgagcatgccaagttttgcc
aaaactgggggacaggtggcctgggccacagggcatgtgtgtgttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35790492_35791702
seq2: B6Ng01-308M02.b_46_1239 (reverse)

seq1  AATTT-CAGTTAATGGTAATCAATCAATCAGAAGGGTTACCTGGTGTCAA  49
      ||||| ||| |||| ||||||||||||||  |||   ||||||  |||||
seq2  AATTTCCAGGTAAT-GTAATCAATCAATCGAAAG---TACCTG--GTCAA  44

seq1  ATAAGTCAGTCATATAATTCTTACATTCTTAACTATTCATTGCTTGACTG  99
         ||||||||  |||||   |||||   |||||| ||||||| ||||||
seq2  --TAGTCAGTC--ATAAT--CTACAT--CTAACTAATCATTGCCTGACTG  86

seq1  ATTTAACTCCTGATGACAGTATATCCTGTGTGCCAC--ACTCTACCAGT-  146
      |||| |||||||||||||||||   |||||||||||   |||||||||| 
seq2  ATTT-ACTCCTGATGACAGTATTATCTGTGTGCCACCACCTCTACCAGTT  135

seq1  -ATTTCTTAAATAAGTCCTTATTAATCCTTAATGTGGGTCTTGAATAACC  195
        |||||||||| ||||||   |||||| ||||||||||| |||||||||
seq2  ATTTTCTTAAAT-AGTCCT--ATAATCC-TAATGTGGGTC-TGAATAACC  180

seq1  TTATGTAGAATTATCTCCATTTTCACAATTGGGGAGTAAGGCCTAGTAAG  245
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATGTAGAATTATCTCCA-TTTCACAATTGGGGAGTAAGGCCTAGTAAG  229

seq1  AGGAAATTTGCTCAGTAAAAATCAAGAATTAAATCTGCCTGCAAGGGCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTTGCTCAGTAAAAATCAAGAATTAAATCTGCCTGCAAGGGCTG  279

seq1  GAGAGATGACTTATTATGTAGGAGCACTGGCTGATTTTTTGAGGAACCTA  345
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGAGATGACTTATTATGTAGGAGCACTGGCTGA-TTTTTGAGGAACCTA  328

seq1  GATCTATCCACAGCACCCACAGGGCGGCCCACAACTGCCTGTAAGTCTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATCCACAGCACCCACAGGGCGGCCCACAACTGCCTGTAAGTCTAT  378

seq1  TCTCATGGGGTACAACACCCTCTTCTGAACTCTGGGCACTAGGAACACCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGGGGTACAACACCCTCTTCTGAACTCTGGGCACTAGGAACACCT  428

seq1  GTGATACAGAGAACAAAAGAATACTTAGACATTTAAAGTAAATAACTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACAGAGAACAAAAGAATACTTAGACATTTAAAGTAAATAACTTTT  478

seq1  AAAAAAAACTTTGTCAGTTTCCTGCAAACTATTGAATGGACAAAACACTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACTTTGTCAGTTTCCTGCAAACTATTGAATGGACAAAACACTA  528

seq1  TAGGTCTTTTAGCTTTCTTAAATATTAAAGTTTCATTTAGAAACCAGTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTTTAGCTTTCTTAAATATTAAAGTTTCATTTAGAAACCAGTGA  578

seq1  TTCTGAAGTGCTGGTTCCATTAAATAATATGATTCGAGCCGGGCGTGGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTGCTGGTTCCATTAAATAATATGATTCGAGCCGGGCGTGGTG  628

seq1  GCGCACGCCTTTAATCCCAGCATTCGGGAGGCAGAGGCAGGCGGATTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACGCCTTTAATCCCAGCATTCGGGAGGCAGAGGCAGGCGGATTTCT  678

seq1  GAGTTCAAGGCCAGCCTGATCTACAAAGTAAGTTCCAGGACAGCCAGGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCAGCCTGATCTACAAAGTAAGTTCCAGGACAGCCAGGGC  728

seq1  TACACAGAGAAACCCTGTCTCAAAAAACCAATAAATAAACTAATTAATTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTCAAAAAACCAATAAATAAACTAATTAATTA  778

seq1  ACTAATTAATTAAAGAATTAATGATAAGACTCTGTTATTAACTTCTATTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTAATTAAAGAATTAATGATAAGACTCTGTTATTAACTTCTATTA  828

seq1  GTGCTTACTGATATTAGAAATTACAAAGAACATTTTCTTCTCCTTTAGGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACTGATATTAGAAATTACAAAGAACATTTTCTTCTCCTTTAGGC  878

seq1  ATCTCCAAGAGTTACTGTTGATGACTATTTAGTGGCAAAACTAGCAGATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAGAGTTACTGTTGATGACTATTTAGTGGCAAAACTAGCAGATA  928

seq1  CTTTGAATCATGAAGACCCAACTCCAGAAATCTTTGATGACATTCAAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATCATGAAGACCCAACTCCAGAAATCTTTGATGACATTCAAAGA  978

seq1  AAGGTACTAATATTTTGTTTCTTGAAAAATTATTTTTGTTTGCATGCAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACTAATATTTTGTTTCTTGAAAAATTATTTTTGTTTGCATGCAGG  1028

seq1  TTTTTTTGAAAAGTAGAATAGTTACTAAAATGATATTATGGAAGTAATAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAAAAGTAGAATAGTTACTAAAATGATATTATGGAAGTAATAA  1078

seq1  CTTAATTACAGAAATGTAGATGACTTTTTTTTCTTGAATGGCCAATGAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTACAGAAATGTAGATGACTTTTTTTTCTTGAATGGCCAATGAGA  1128

seq1  AAAATCTTTATTTTGAGTTTCTTTGTTTGAATCTGAAGAGCCAGATAGTG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTATTTTGAGTTTCTTTGTTTGAATCTGAAGAGCCAGATAGTG  1178

seq1  AGTAGTCTTAGAATTC  1211
      ||||||||||||||||
seq2  AGTAGTCTTAGAATTC  1194


seq1: chr12_35648540_35649235
seq2: B6Ng01-308M02.g_66_763

seq1  GAATTCCCTCCATTTGTGTTTTCTTTATTCCTTTGTTTGTCTGTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCATTTGTGTTTTCTTTATTCCTTTGTTTGTCTGTTTGTTT  50

seq1  CTATTTTTAGGTCTTGAACAGTCTCCTTCATCTGTTTGTTTTGCCTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTAGGTCTTGAACAGTCTCCTTCATCTGTTTGTTTTGCCTTGGC  100

seq1  TTCCTTTAAGGGATTTGTTGATTCCCTCCATTTTTTATTTGTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAAGGGATTTGTTGATTCCCTCCATTTTTTATTTGTTTTTTTTT  150

seq1  CCTCAATTCCCCTTAATGATTGTTTTCATTTCTTTTTTAAGGAACTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTCCCCTTAATGATTGTTTTCATTTCTTTTTTAAGGAACTCTAT  200

seq1  TCATCGTCATAAAGTTGGTTTTAGGTAATTTTCTTGTGTTTCAGCTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTCATAAAGTTGGTTTTAGGTAATTTTCTTGTGTTTCAGCTAAAT  250

seq1  TTAAATATTTCATCTTGTTTTCTTAGGATAGCTGGGCTCTGGTGGTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTTCATCTTGTTTTCTTAGGATAGCTGGGCTCTGGTGGTATCA  300

seq1  TATTGACTTGGATGTTGTTGATTATTTTATTACACTGGGGTTTAGGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTGGATGTTGTTGATTATTTTATTACACTGGGGTTTAGGCATC  350

seq1  TGGGTTTGGGGTGGTTATGGGTATAGAAGCTGATTTCTGAGATTGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGGGGTGGTTATGGGTATAGAAGCTGATTTCTGAGATTGTCTTT  400

seq1  GTTGGATTGGTGTTTTGTTCCTTGGTTTCTGTTTTGTTTTGTTGTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATTGGTGTTTTGTTCCTTGGTTTCTGTTTTGTTTTGTTGTTGTTT  450

seq1  TGTTTCTTTTGTTTTGCCTGAATTTCTGATGGCTGGCTTGGCTCCTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTTGTTTTGCCTGAATTTCTGATGGCTGGCTTGGCTCCTGAAC  500

seq1  CACTAAGGAGTCTGATCAAGTTGGGAACTGGACTTTTGGGGACTAGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGAGTCTGATCAAGTTGGGAACTGGACTTTTGGGGACTAGCTTG  550

seq1  GCCTTTGGTGCAGCAGGGAGTCTCTGTTCTTCTGGTTGGTATGTCCTGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGTGCAGCAGGGAGTCTCTGTTCTTCTGGTTGGTATGTCCTGCG  600

seq1  CCTGTTCTCCTGACTGGTGTGGCCTGTACCTGAGCAGGCCAAG-TTTGCC  649
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  CCTGTTCTCCTGACTGGTGTGGCCTGTACCTGAGCATGCCAAGTTTTGCC  650

seq1  AAAACTGGGGGACA-GTGGCCT-GGCCACAGGGCATGTGTGTGTGTGTG  696
      |||||||||||||| ||||||| ||||||||||||||||||||| ||||
seq2  AAAACTGGGGGACAGGTGGCCTGGGCCACAGGGCATGTGTGTGT-TGTG  698


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