BAC Information

Click to search

BAC

Clone NameB6Ng01-310G14
Chromosome12 (Build37)
Map Location 20,197,202 - 20,317,699
singlet/doubletdoublet
Overlap geneLOC668614
Upstream geneLOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055, EG668588, LOC100042706, EG668594, EG668600, LOC100042727, LOC673301, EG668605
Downstream geneLOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257, Ddef2, Itgb1bp1, Cpsf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310G14.bB6Ng01-310G14.g
ACCGA102395GA102396
length1,1581,174
definitionB6Ng01-310G14.b B6Ng01-310G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,197,202 - 20,198,372)(20,316,526 - 20,317,699)
sequence
gaattccaggacagccagggctatacagagaaaccctgtcttgaaaaaaa
aaaaatcaaaaccaaaaccaaaaccaaaaacccaaaacaactatctgtaa
ctccagttcaaggggatctggcaccctctctggtctttgggcacaccagc
aaaaaattgacccccagatctaagtttccatctgtgttataattgtgtgc
tgccaaatctttccctgcctctgtccccaaagcacaaaccgtgaggtgag
tgacacatacatgtggctgtctctcaccttggggtgtaaatggcttgttt
tcacaacattatctgggggtaagtactctacgaggtggaggagaaagtcc
cagtgacatttccctgttcacatcacgggtccttgtgggtgtccctattt
tattgcgttgtttaccacaaagttccgttaagacccagacctgttcattc
caagtgtaatcatttacaagttaacttcaagcaaactggaaatgtctgtg
ttaaacaagccaagccttcagaaaattctggagctgagaacattaccttt
tctcttggctggacagtgagaaatctcaggttcttgggaattactagagg
cagaacattcctctggaaaatgggctgttagccaatcttactgggcacca
ggcatgggcttttctatccttcttcctttggtttccttagctgaattgag
taaaggatgaagcttatgttggctcacaggattagagatttctgtctttt
ggtcttgctggtttggggactttaggtgaggcaagacattgtggtggaag
aatgcaggggaggggagatgctcacagcatgacagaagggaatcagagag
aggagagaagccagacttccagtattttcttccctgaaaggatctagtaa
cacttccccaacaaaggcctgtctgctagcttccattacgtcccagaagc
actgttgagaggatgctgatgatgtcatcagaggtctacaagtctttatc
cagactttttagctcttcaagtctcaaaaagaatcacttgtctgagagag
gttcctcactctgcagccacgtagccacagctaagagagatctgctgttc
ctttctcgagtgctggattaaggtatgccacacacttgcaaaggatctag
ttttaaaa
gaattccccaccagaacctcaggaaagggccagtgagacagtgtgggtag
ctcgccccctacaagacagtgaaatcctccagggcactttagagggacaa
gatgtagggacagttagttggggatgcaatgatagggaccatgttctgtc
tgtggtccttctcacagccttaagaagccagggataaaggataaaggcag
gtgttttgcatagggagttgaccatggtacaagccgaatgggaattcaaa
cccataaccttcgacttggaagaatactccaacccctattaagcatcctg
tttcctaagcttgcacaattagggacactcccagttacctgaagacagtt
ttagggtgctaggccaggcttcaccctgagaaaatcatagaatgcagtga
tgtgctgtgggaagtgggggatacccaagagaaccagaggtacagatggt
tctcagagagtactccaacgcacagctgactgatcacagacaaaattggg
ccaataaatcatctgaattagaacattttcatctatatctcattcagaaa
ttctcagctgtattttaaaaacccagagtttctgaaggcactagtcaaaa
atcacaccctctaactccccgaggcaagaggcatggttactgctgctgcc
aacaatacagcctagagaaactttaaaaaaaccttttgtgtgtctgaaaa
aaagggaatgtgaaggacattataagcccagcatgggaaataaaagtggt
ctcctgctgccataggacagtagaccagtccatccttttaagactcgcat
gtacaaatatgctgtatgaggtagcagctgaggtcagacgttatgtatgg
cttctggtattttaccaccactacctgtgaataagttccgccttcaaaaa
tagctgtggcagtgggtagcttttattcctgcacaaggcaataaactgca
atccccaaactctgcaactctctgccactttccacattgtgaacatcctt
tccatttagtgtctcaggacacaccttattctcagcatgtatacttgagg
gtatttgtgttatagtacagctctcttcacaagcaatttctggatccctc
tgcctcctctttcaactatagtccatttgttcttccttggaattgaagaa
ataataccgtgtgacttttcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_20197202_20198372
seq2: B6Ng01-310G14.b_49_1206

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAAAA  50

seq1  AAAAATCAAAACCAAAACCAAAACCAAAAACCCAAAACAACTATCTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAAACCAAAACCAAAACCAAAAACCCAAAACAACTATCTGTAA  100

seq1  CTCCAGTTCAAGGGGATCTGGCACCCTCTCTGGTCTTTGGGCACACCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTCAAGGGGATCTGGCACCCTCTCTGGTCTTTGGGCACACCAGC  150

seq1  AAAAAATTGACCCCCAGATCTAAGTTTCCATCTGTGTTATAATTGTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTGACCCCCAGATCTAAGTTTCCATCTGTGTTATAATTGTGTGC  200

seq1  TGCCAAATCTTTCCCTGCCTCTGTCCCCAAAGCACAAACCGTGAGGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATCTTTCCCTGCCTCTGTCCCCAAAGCACAAACCGTGAGGTGAG  250

seq1  TGACACATACATGTGGCTGTCTCTCACCTTGGGGTGTAAATGGCTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATACATGTGGCTGTCTCTCACCTTGGGGTGTAAATGGCTTGTTT  300

seq1  TCACAACATTATCTGGGGGTAAGTACTCTACGAGGTGGAGGAGAAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACATTATCTGGGGGTAAGTACTCTACGAGGTGGAGGAGAAAGTCC  350

seq1  CAGTGACATTTCCCTGTTCACATCACGGGTCCTTGTGGGTGTCCCTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACATTTCCCTGTTCACATCACGGGTCCTTGTGGGTGTCCCTATTT  400

seq1  TATTGCGTTGTTTACCACAAAGTTCCGTTAAGACCCAGACCTGTTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCGTTGTTTACCACAAAGTTCCGTTAAGACCCAGACCTGTTCATTC  450

seq1  CAAGTGTAATCATTTACAAGTTAACTTCAAGCAAACTGGAAATGTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTAATCATTTACAAGTTAACTTCAAGCAAACTGGAAATGTCTGTG  500

seq1  TTAAACAAGCCAAGCCTTCAGAAAATTCTGGAGCTGAGAACATTACCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAGCCAAGCCTTCAGAAAATTCTGGAGCTGAGAACATTACCTTT  550

seq1  TCTCTTGGCTGGACAGTGAGAAATCTCAGGTTCTTGGGAATTACTAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGCTGGACAGTGAGAAATCTCAGGTTCTTGGGAATTACTAGAGG  600

seq1  CAGAACATTCCTCTGGAAAATGGGCTGTTAGCCAATCTTACTGGGCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATTCCTCTGGAAAATGGGCTGTTAGCCAATCTTACTGGGCACCA  650

seq1  GGCATGGGCTTTTCTATCCTTCTTCCTTTGGTTTCCTTAGCTGAATTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGCTTTTCTATCCTTCTTCCTTTGGTTTCCTTAGCTGAATTGAG  700

seq1  TAAAGGATGAAGCTTATGTTGGCTCACAGGATTAGAGATTTCTGTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATGAAGCTTATGTTGGCTCACAGGATTAGAGATTTCTGTCTTTT  750

seq1  GGTCTTGCTGGTTTGGGGACTTTAGGTGAGGCAAGACATTGTGGTGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCTGGTTTGGGGACTTTAGGTGAGGCAAGACATTGTGGTGGAAG  800

seq1  AATGCAGGGGAGGGGAGATGCTCACAGCATGACAGAAGGGAATCAGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGGGAGGGGAGATGCTCACAGCATGACAGAAGGGAATCAGAGAG  850

seq1  AGGAGAGAAGCCAGACTTCCAGTATTTTCTTCCCTGAAAGGATCTAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAGCCAGACTTCCAGTATTTTCTTCCCTGAAAGGATCTAGTAA  900

seq1  CACTTCCCCAACAAAGGCCTGTCTGCTAGCTTCCATTACGTCCCAGAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCCAACAAAGGCCTGTCTGCTAGCTTCCATTACGTCCCAGAAGC  950

seq1  ACTGTTGAGAGGATGCTGATGATGTCATCAGAGGTCTACAAGTCTTTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGAGAGGATGCTGATGATGTCATCAGAGGTCTACAAGTCTTTATC  1000

seq1  CAGACCTTTTTAGCTCTTCAAAGTCTCAAAAAGAATCCACTTGTCTGAGA  1050
      |||| |||||||||||||| |||||||||||||||| |||||||||||||
seq2  CAGA-CTTTTTAGCTCTTC-AAGTCTCAAAAAGAAT-CACTTGTCTGAGA  1047

seq1  GAGGTT-CTCACTCTGCAGCCCACGTTAGCCACAGCCTAAGAGAGATCTG  1099
      |||||| |||||||||||| ||||| ||||||||| ||||||||||||||
seq2  GAGGTTCCTCACTCTGCAG-CCACG-TAGCCACAG-CTAAGAGAGATCTG  1094

seq1  CCTGTTTCTTTCTTCAGAGTGCTGGGATTAAAGGTATGGCCACCACACCT  1149
       ||||| ||||||   ||||||| ||||| ||||||| |||| ||||| |
seq2  -CTGTTCCTTTCT--CGAGTGCT-GGATT-AAGGTAT-GCCA-CACACTT  1137

seq1  GGCAAAGATCTAGTTTTTAAAA  1171
      |  || ||||||||||| ||| 
seq2  GCAAAGGATCTAGTTTTAAAA-  1158

seq1: chr12_20316526_20317699
seq2: B6Ng01-310G14.g_67_1240 (reverse)

seq1  CCTTGAAAAGTCACA-GGTAATA-TTCTTCAATTTCAGAGAAGAACAAAA  48
      ||||||||||||||| |||| || |||||||||| ||  |||||||||| 
seq2  CCTTGAAAAGTCACACGGTATTATTTCTTCAATTCCAAGGAAGAACAAAT  50

seq1  GGACTTATAGGTGGAAAGA-GAGGCAGAGGGAT-CAGAAATTGCCTTGTG  96
      |||| |||| || |||||| ||||||||||||| ||||||||| ||||||
seq2  GGAC-TATA-GTTGAAAGAGGAGGCAGAGGGATCCAGAAATTG-CTTGTG  97

seq1  AAGGAGAGCCTGTACTATAACAC-AATACCCTCAAGTTATACATGCTGAG  145
      || ||||| |||||||||||||| |||||||||||| |||||||||||||
seq2  AA-GAGAG-CTGTACTATAACACAAATACCCTCAAG-TATACATGCTGAG  144

seq1  A--TAGGTGTGTCCCTGAGACACTAAATGG-AAGGATGTTCACAATGGTG  192
      |   |||||||| ||||||||||||||||| ||||||||||||||| |||
seq2  AATAAGGTGTGT-CCTGAGACACTAAATGGAAAGGATGTTCACAAT-GTG  192

seq1  GAAAGTGGCAGAGAGTTGCAGAGTTTGGGGATTGCAGTTTATTGCCTTGT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGCAGAGAGTTGCAGAGTTTGGGGATTGCAGTTTATTGCCTTGT  242

seq1  GCAGGAATAAAAGCTACCCACTGCCACAGCTATTTTTGAAGGCGGAACTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATAAAAGCTACCCACTGCCACAGCTATTTTTGAAGGCGGAACTT  292

seq1  ATTCACAGGTAGTGGTGGTAAAATACCAGAAGCCATACATAACGTCTGAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGGTAGTGGTGGTAAAATACCAGAAGCCATACATAACGTCTGAC  342

seq1  CTCAGCTGCTACCTCATACAGCATATTTGTACATGCGAGTCTTAAAAGGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGCTACCTCATACAGCATATTTGTACATGCGAGTCTTAAAAGGA  392

seq1  TGGACTGGTCTACTGTCCTATGGCAGCAGGAGACCACTTTTATTTCCCAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGTCTACTGTCCTATGGCAGCAGGAGACCACTTTTATTTCCCAT  442

seq1  GCTGGGCTTATAATGTCCTTCACATTCCCTTTTTTTCAGACACACAAAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTTATAATGTCCTTCACATTCCCTTTTTTTCAGACACACAAAAG  492

seq1  GTTTTTTTAAAGTTTCTCTAGGCTGTATTGTTGGCAGCAGCAGTAACCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTAAAGTTTCTCTAGGCTGTATTGTTGGCAGCAGCAGTAACCAT  542

seq1  GCCTCTTGCCTCGGGGAGTTAGAGGGTGTGATTTTTGACTAGTGCCTTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGCCTCGGGGAGTTAGAGGGTGTGATTTTTGACTAGTGCCTTCA  592

seq1  GAAACTCTGGGTTTTTAAAATACAGCTGAGAATTTCTGAATGAGATATAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTGGGTTTTTAAAATACAGCTGAGAATTTCTGAATGAGATATAG  642

seq1  ATGAAAATGTTCTAATTCAGATGATTTATTGGCCCAATTTTGTCTGTGAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGTTCTAATTCAGATGATTTATTGGCCCAATTTTGTCTGTGAT  692

seq1  CAGTCAGCTGTGCGTTGGAGTACTCTCTGAGAACCATCTGTACCTCTGGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCTGTGCGTTGGAGTACTCTCTGAGAACCATCTGTACCTCTGGT  742

seq1  TCTCTTGGGTATCCCCCACTTCCCACAGCACATCACTGCATTCTATGATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGGTATCCCCCACTTCCCACAGCACATCACTGCATTCTATGATT  792

seq1  TTCTCAGGGTGAAGCCTGGCCTAGCACCCTAAAACTGTCTTCAGGTAACT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGGTGAAGCCTGGCCTAGCACCCTAAAACTGTCTTCAGGTAACT  842

seq1  GGGAGTGTCCCTAATTGTGCAAGCTTAGGAAACAGGATGCTTAATAGGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGTCCCTAATTGTGCAAGCTTAGGAAACAGGATGCTTAATAGGGG  892

seq1  TTGGAGTATTCTTCCAAGTCGAAGGTTATGGGTTTGAATTCCCATTCGGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTATTCTTCCAAGTCGAAGGTTATGGGTTTGAATTCCCATTCGGC  942

seq1  TTGTACCATGGTCAACTCCCTATGCAAAACACCTGCCTTTATCCTTTATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCATGGTCAACTCCCTATGCAAAACACCTGCCTTTATCCTTTATC  992

seq1  CCTGGCTTCTTAAGGCTGTGAGAAGGACCACAGACAGAACATGGTCCCTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTCTTAAGGCTGTGAGAAGGACCACAGACAGAACATGGTCCCTA  1042

seq1  TCATTGCATCCCCAACTAACTGTCCCTACATCTTGTCCCTCTAAAGTGCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCATCCCCAACTAACTGTCCCTACATCTTGTCCCTCTAAAGTGCC  1092

seq1  CTGGAGGATTTCACTGTCTTGTAGGGGGCGAGCTACCCACACTGTCTCAC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGATTTCACTGTCTTGTAGGGGGCGAGCTACCCACACTGTCTCAC  1142

seq1  TGGCCCTTTCCTGAGGTTCTGGTGGGGAATTC  1174
      ||||||||||||||||||||||||||||||||
seq2  TGGCCCTTTCCTGAGGTTCTGGTGGGGAATTC  1174