BAC Information

Click to search

BAC

Clone NameB6Ng01-310H14
Chromosome12 (Build37)
Map Location 53,876,424 - 53,971,407
singlet/doubletdoublet
Overlap geneAkap6
Upstream geneHectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310H14.bB6Ng01-310H14.g
ACCGA102439GA102440
length1,205867
definitionB6Ng01-310H14.b B6Ng01-310H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,970,199 - 53,971,407)(53,876,424 - 53,877,335)
sequence
gaattccaataatgtggttttaaatctaccctctttgcccttttccagag
gctcctttgggaaataaaaatggataagaataacatatctgactgccaag
cacagcagccatccattattaatactccaatgacccgccaaaatggagga
tgaggtctattcaaataatcctgtaacagcgattcaacctcctcaaagga
tcttattctttgcttttgaaatctgttacaagctaagtgacaaagtcagt
tgcaatgtactttttatatatctaggttaattttatctaaaatgtcattt
gaaaacccattgcttatttagattgactataaacctagtgaagagctttc
ttctccctaattatacacagagaattctgttcctttcaaaccatgggtgg
ggtttcagaatacatacaaaagaagtggcaggatcgataaatgaggtctg
agctagctcggacaacatctgaacctagattcattcaatatttcattcat
gattaatacactctgcccccttgtgccctaaaccatgtgctcagcccact
cttaattcactgtagacagaaaccattttgtgatggtctggtgaaaattc
agatgtgtgcaagtgtactgacaggaaacagacataataaaattaaggac
acaaaatgaaaagggcaacttagcaggggatgctgggaacatgggtaaga
aaagccctgtcgagagggtcacaaggcaaaacaacttccattatttatct
gtaagttagactttagctacttctgaagcaaagtgggatatgccagctga
cttccagatagagagcacaactaatgttttttaaaggcggagggaacatg
ggggcaaagaacagaaaggtgacagtcctggcactagaagcacgcccttg
gaaattgtgaaagttgaaagaaaggtttggtagaggaattagacaccagg
gacatcagtagacataaggatatagcgcttaaataatttctgcataccaa
ggaaaacatagaagatggtccagaaaagatcacatcttcagaactgcctt
atgtctttgtgcaatatccagactacctagaaggcagagcaatgctgaga
gaaactttagtgtggggagatctagctgaaaagatcagctaacccgagag
agcatgaatgacagagaatctacagaaaccttaaggtgttggtcctggtg
aaaga

gaattcatgtataaatgcagagtgtatctatactcacccatgcatagttt
tagttaatgtcaatttttatctaagcagttgatttacaactctgcatata
tggtagaggcttgtctataagcttcgatatgaagctggacgtcttgtttg
tttgttgtgagacaggatctctttacctagccctggctttcctggaactt
ttatagaacaggctgaccttgaactaacagagctctgcctgcccctgccc
ctgcccctgcccctgcccctgcccctgcccctgcccctgcccctgcccct
gcccctgcccctgcccctgcccctgcccctgcccctgcccctgcccctgc
ctcctgagaaatctggagttctctggaggcttttacttcccagggaacat
tcagtggtatctacagacacttctgattgtcacgactgcagaagtgggtg
aatattccttgcacatagtaggcagagaccacagcagctgagcactccat
agtgctgacgtgacaaagaatggtttgagccaaattttaacagtgtcaag
gttgagaactctgttgttggataaagaggctgtttattaatagaatatga
agataatgtaacatccagtatgtatatattgaccaatttccagttagggt
aggttactccttcctacagctatatttgtgtctagaagagatcctctatt
ctaattttctggagaagatatactccaagcaatatgaactagaatctact
taattacagaatcagataatatttaagtatcctagaatcacaatgagaca
tgtggatatcagagagcactgctctgactatatcagaccatttgacgaca
gtatgttatacattggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53970199_53971407
seq2: B6Ng01-310H14.b_48_1252 (reverse)

seq1  TCTTTCACCAG---CAACACC-TAGGTTTTCTGTAGGTTTCTTCTTGTCA  46
      |||||||||||   ||||||| || | |||||||| | ||||   |||||
seq2  TCTTTCACCAGGACCAACACCTTAAGGTTTCTGTA-GATTCT--CTGTCA  47

seq1  TCACTGCTCTCTCTGGTTAGCTGATCCTTTTCAGCCTAGATCTCCCCACA  96
      |   ||||||||| ||||||||||| |||||||| |||||||||||||||
seq2  TTCATGCTCTCTCGGGTTAGCTGAT-CTTTTCAG-CTAGATCTCCCCACA  95

seq1  CTTAAGGTTTCTCTCAGCCTTTGCCTCTGCCTTCTAGGTAGTCTGGATTA  146
      | ||| |||||||||||| ||   ||||||||||||||||||||||||  
seq2  C-TAAAGTTTCTCTCAGCATT--GCTCTGCCTTCTAGGTAGTCTGGAT--  140

seq1  TTTGCACAAAGACATAAGGCAGTTCTGAAGATGTGATCTTTTCTGGACCA  196
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACAAAGACATAAGGCAGTTCTGAAGATGTGATCTTTTCTGGACCA  190

seq1  TCTTCTATGTTTTCCTTGGTATGCAGAAATTATTTAAGCGCTATATCCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATGTTTTCCTTGGTATGCAGAAATTATTTAAGCGCTATATCCTT  240

seq1  ATGTCTACTGATGTCCCTGGTGTCTAATTCCTCTACCAAACCTTTCTTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACTGATGTCCCTGGTGTCTAATTCCTCTACCAAACCTTTCTTTC  290

seq1  AACTTTCACAA-TTCCAAGGGCGTGCTTCTAGTGCCAGGACTGTCACCTT  345
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCACAATTTCCAAGGGCGTGCTTCTAGTGCCAGGACTGTCACCTT  340

seq1  TCTGTTCTTTGCCCCCATGTTCCCTCCGCC-TTAAAAAACATTAGTTGTG  394
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGTTCTTTGCCCCCATGTTCCCTCCGCCTTTAAAAAACATTAGTTGTG  390

seq1  CTCTCTATCTGGAAGTCAGCTGGCATATCCCACTTTGCTTCAGAAGTAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATCTGGAAGTCAGCTGGCATATCCCACTTTGCTTCAGAAGTAGC  440

seq1  TAAAGTCTAACTTACAGATAAATAATGGAAGTTGTTTTGCCTTGTGACCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTAACTTACAGATAAATAATGGAAGTTGTTTTGCCTTGTGACCC  490

seq1  TCTCGACAGGGCTTTTCTTACCCATGTTCCCAGCATCCCCTGCTAAGTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGACAGGGCTTTTCTTACCCATGTTCCCAGCATCCCCTGCTAAGTTG  540

seq1  CCCTTTTCATTTTGTGTCCTTAATTTTATTATGTCTGTTTCCTGTCAGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCATTTTGTGTCCTTAATTTTATTATGTCTGTTTCCTGTCAGTA  590

seq1  CACTTGCACACATCTGAATTTTCACCAGACCATCACAAAATGGTTTCTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCACACATCTGAATTTTCACCAGACCATCACAAAATGGTTTCTGT  640

seq1  CTACAGTGAATTAAGAGTGGGCTGAGCACATGGTTTAGGGCACAAGGGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGAATTAAGAGTGGGCTGAGCACATGGTTTAGGGCACAAGGGGG  690

seq1  CAGAGTGTATTAATCATGAATGAAATATTGAATGAATCTAGGTTCAGATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTATTAATCATGAATGAAATATTGAATGAATCTAGGTTCAGATG  740

seq1  TTGTCCGAGCTAGCTCAGACCTCATTTATCGATCCTGCCACTTCTTTTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCGAGCTAGCTCAGACCTCATTTATCGATCCTGCCACTTCTTTTGT  790

seq1  ATGTATTCTGAAACCCCACCCATGGTTTGAAAGGAACAGAATTCTCTGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCTGAAACCCCACCCATGGTTTGAAAGGAACAGAATTCTCTGTG  840

seq1  TATAATTAGGGAGAAGAAAGCTCTTCACTAGGTTTATAGTCAATCTAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAGGGAGAAGAAAGCTCTTCACTAGGTTTATAGTCAATCTAAAT  890

seq1  AAGCAATGGGTTTTCAAATGACATTTTAGATAAAATTAACCTAGATATAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGGGTTTTCAAATGACATTTTAGATAAAATTAACCTAGATATAT  940

seq1  AAAAAGTACATTGCAACTGACTTTGTCACTTAGCTTGTAACAGATTTCAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTACATTGCAACTGACTTTGTCACTTAGCTTGTAACAGATTTCAA  990

seq1  AAGCAAAGAATAAGATCCTTTGAGGAGGTTGAATCGCTGTTACAGGATTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGAATAAGATCCTTTGAGGAGGTTGAATCGCTGTTACAGGATTA  1040

seq1  TTTGAATAGACCTCATCCTCCATTTTGGCGGGTCATTGGAGTATTAATAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAGACCTCATCCTCCATTTTGGCGGGTCATTGGAGTATTAATAA  1090

seq1  TGGATGGCTGCTGTGCTTGGCAGTCAGATATGTTATTCTTATCCATTTTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGCTGCTGTGCTTGGCAGTCAGATATGTTATTCTTATCCATTTTT  1140

seq1  ATTTCCCAAAGGAGCCTCTGGAAAAGGGCAAAGAGGGTAGATTTAAAACC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAAAGGAGCCTCTGGAAAAGGGCAAAGAGGGTAGATTTAAAACC  1190

seq1  ACATTATTGGAATTC  1209
      |||||||||||||||
seq2  ACATTATTGGAATTC  1205


seq1: chr12_53876424_53877335
seq2: B6Ng01-310H14.g_67_933

seq1  GAATTCATGTATAAATGCAGAGTGTATCTATACTCACCCATGCATAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTATAAATGCAGAGTGTATCTATACTCACCCATGCATAGTTT  50

seq1  TAGTTAATGTCAATTTTTATCTAAGCAGTTGATTTACAACTCTGCATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATGTCAATTTTTATCTAAGCAGTTGATTTACAACTCTGCATATA  100

seq1  TGGTAGAGGCTTGTCTATAAGCTTCGATATGAAGCTGGACGTCTTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAGGCTTGTCTATAAGCTTCGATATGAAGCTGGACGTCTTGTTTG  150

seq1  TTTGTTGTGAGACAGGATCTCTTTACCTAGCCCTGGCTTTCCTGGAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTGAGACAGGATCTCTTTACCTAGCCCTGGCTTTCCTGGAACTT  200

seq1  TTATAGAACAGGCTGACCTTGAACTAACAGAGCTCTGCCTGCCCCTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAACAGGCTGACCTTGAACTAACAGAGCTCTGCCTGCCCCTGCCC  250

seq1  CTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCT  300

seq1  GCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGC  350

seq1  CTCCTGAGAAATCTGGAGTTCTCTGGAGGCTTTTACTTCCCAGGGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGAAATCTGGAGTTCTCTGGAGGCTTTTACTTCCCAGGGAACAT  400

seq1  TCAGTGGTATCTACAGACACTTCTGATTGTCACGACTGCAGAAGTGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTATCTACAGACACTTCTGATTGTCACGACTGCAGAAGTGGGTG  450

seq1  AATATTCCTTGCACATAGTAGGCAGAGACCACAGCAGCTGAGCACTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTTGCACATAGTAGGCAGAGACCACAGCAGCTGAGCACTCCAT  500

seq1  AGTGCTGACGTGACAAAGAATGGTTTGAGCCAAATTTTAACAGTGTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGACGTGACAAAGAATGGTTTGAGCCAAATTTTAACAGTGTCAAG  550

seq1  GTTGAGAAACTCTGTTGTTGGATAAAGAGGCTGTTTATTAATAGAATATG  600
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAG-AACTCTGTTGTTGGATAAAGAGGCTGTTTATTAATAGAATATG  599

seq1  AAAGATAAATGTAAACATCCAGTAGGTATATATTGACCAAATTTCCAAGT  650
       ||||| ||||| ||||||||||| ||||||||||||| ||||||| |||
seq2  -AAGAT-AATGT-AACATCCAGTATGTATATATTGACC-AATTTCC-AGT  644

seq1  TAAGGGTAGGTTACTCCTTCCTACAGCTATATTTTGTGTCTTAGAAAAGA  700
      | ||||||||||||||||||||||||||||| |||||||||   | ||||
seq2  T-AGGGTAGGTTACTCCTTCCTACAGCTATA-TTTGTGTCT---AGAAGA  689

seq1  GATCCTCTATTCTAATTTTTCTGGAGAAGGATATACTCCAAGCAATAAGA  750
      ||||||||||||||| |||||||||||| |||||||||||||||||| ||
seq2  GATCCTCTATTCTAA-TTTTCTGGAGAA-GATATACTCCAAGCAATATGA  737

seq1  ACTTAGAATTCTACTTAAATTACAGAAATAAAGAATAAATATTTAAAGTA  800
      || ||||| ||||||| ||||||||||  | | ||||     || |||| 
seq2  AC-TAGAA-TCTACTT-AATTACAGAATCAGATAATA-----TTTAAGT-  778

seq1  ATCCAAAGAAAATCAACAAAATGAAGGAAACATGTGGATATCAGAGAAGC  850
      ||||    | |||||        || || ||||||||||||||||| |||
seq2  ATCC---TAGAATCA-------CAATGAGACATGTGGATATCAGAG-AGC  817

seq1  ACTGCATCATTGACCTATATCCCAGACCAATTTTTAAAAGAACAGTATGT  900
      ||||| ||  ||| ||||||  ||||||| ||      |  |||||||||
seq2  ACTGC-TC--TGA-CTATAT--CAGACCATTT-----GACGACAGTATGT  856

seq1  TAATACATTGGG  912
      | ||||||||||
seq2  T-ATACATTGGG  867


| Home | SequenceCutter | Blast | Download |