BAC Information

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BAC

Clone NameB6Ng01-311C09
Chromosome12 (Build37)
Map Location 97,442,256 - 97,593,715
singlet/doubletdoublet
Overlap geneLOC100039664
Upstream geneLOC667688, Flrt2, 1700019M22Rik
Downstream geneEG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311C09.bB6Ng01-311C09.g
ACCGA102938GA102939
length790253
definitionB6Ng01-311C09.b B6Ng01-311C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,592,926 - 97,593,715)(97,442,256 - 97,442,508)
sequence
gaattcactaggttgaccggactggccttgaacttagagatccatatgcc
tgtacctcctgagtgctgggagtaaaggcgtgcatgcatcaagagaacaa
gcaggtttgtgttcacttttagtcattaagactgtgaaatttttaatatg
ttttctgttaaagaaataaggatgtcttaagtcatgtttttgagtactcc
tattaagaaaagtatattctagtactcacagttactctctgtaggaaacc
ctctttgcacaggtgatcttattttgttcatgctacacttacttttcttg
ccaacatttttgtgtaataaaaagctattataatataacataatatactg
tgaaaagataattaagaacaatttgagcttaagacaaataattgctgtag
gtatttacatgctcactaaggcatattaaaaattttcaggttcatttgag
aattgttgtacgtggaaatgtcagacaaaatttctttaagacagaaaaca
ggatgaaatactttattaattaaaatttttgacatttaataaatgtataa
aatgtattctaatcacacttccctctctactctgtctaattcctcttcct
acctaaaaatcctttacccacattcatgcctgtttgttttgttattgccc
catagacctcaactatttttgtgatcatggctttggaattatatttgagg
caagattactatatttcataatcccatagtcttccttccccttctgactt
tcaccttttaacttccttccttccttccttccttccttcc

tcagaatatattgtctcctgatagtattagatgagactgaaatatttgtg
gaaggctattgttaaagggtgaccagtatgagatataaggaaagcattct
ctaacataattgtttatggaattagtgagcaagttaatgcctaaatatga
ctactgaaattgcaaattacttcctcaagtgtacagtatatgagagttat
caccgagatcagagtttgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_97592926_97593715
seq2: B6Ng01-311C09.b_48_837 (reverse)

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGTTAAAAGGTGAAAGTCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGTTAAAAGGTGAAAGTCAGAAG  50

seq1  GGGAAGGAAGACTATGGGATTATGAAATATAGTAATCTTGCCTCAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAAGACTATGGGATTATGAAATATAGTAATCTTGCCTCAAATAT  100

seq1  AATTCCAAAGCCATGATCACAAAAATAGTTGAGGTCTATGGGGCAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAAGCCATGATCACAAAAATAGTTGAGGTCTATGGGGCAATAAC  150

seq1  AAAACAAACAGGCATGAATGTGGGTAAAGGATTTTTAGGTAGGAAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAGGCATGAATGTGGGTAAAGGATTTTTAGGTAGGAAGAGGA  200

seq1  ATTAGACAGAGTAGAGAGGGAAGTGTGATTAGAATACATTTTATACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACAGAGTAGAGAGGGAAGTGTGATTAGAATACATTTTATACATTT  250

seq1  ATTAAATGTCAAAAATTTTAATTAATAAAGTATTTCATCCTGTTTTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTCAAAAATTTTAATTAATAAAGTATTTCATCCTGTTTTCTGT  300

seq1  CTTAAAGAAATTTTGTCTGACATTTCCACGTACAACAATTCTCAAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAAATTTTGTCTGACATTTCCACGTACAACAATTCTCAAATGAA  350

seq1  CCTGAAAATTTTTAATATGCCTTAGTGAGCATGTAAATACCTACAGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAATTTTTAATATGCCTTAGTGAGCATGTAAATACCTACAGCAAT  400

seq1  TATTTGTCTTAAGCTCAAATTGTTCTTAATTATCTTTTCACAGTATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCTTAAGCTCAAATTGTTCTTAATTATCTTTTCACAGTATATTA  450

seq1  TGTTATATTATAATAGCTTTTTATTACACAAAAATGTTGGCAAGAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATTATAATAGCTTTTTATTACACAAAAATGTTGGCAAGAAAAGT  500

seq1  AAGTGTAGCATGAACAAAATAAGATCACCTGTGCAAAGAGGGTTTCCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGCATGAACAAAATAAGATCACCTGTGCAAAGAGGGTTTCCTAC  550

seq1  AGAGAGTAACTGTGAGTACTAGAATATACTTTTCTTAATAGGAGTACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTAACTGTGAGTACTAGAATATACTTTTCTTAATAGGAGTACTCA  600

seq1  AAAACATGACTTAAGACATCCTTATTTCTTTAACAGAAAACATATTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGACTTAAGACATCCTTATTTCTTTAACAGAAAACATATTAAAA  650

seq1  ATTTCACAGTCTTAATGACTAAAAGTGAACACAAACCTGCTTGTTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAGTCTTAATGACTAAAAGTGAACACAAACCTGCTTGTTCTCTT  700

seq1  GATGCATGCACGCCTTTACTCCCAGCACTCAGGAGGTACAGGCATATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATGCACGCCTTTACTCCCAGCACTCAGGAGGTACAGGCATATGGA  750

seq1  TCTCTAAGTTCAAGGCCAGTCCGGTCAACCTAGTGAATTC  790
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGTTCAAGGCCAGTCCGGTCAACCTAGTGAATTC  790


seq1: chr12_97442256_97442508
seq2: B6Ng01-311C09.g_73_325

seq1  TCAGAATATATTGTCTCCTGATAGTATTAGATGAGACTGAAATATTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATATTGTCTCCTGATAGTATTAGATGAGACTGAAATATTTGTG  50

seq1  GAAGGCTATTGTTAAAGGGTGACCAGTATGAGATATAAGGAAAGCATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTATTGTTAAAGGGTGACCAGTATGAGATATAAGGAAAGCATTCT  100

seq1  CTAACATAATTGTTTATGGAATTAGTGAGCAAGTTAATGCCTAAATATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATAATTGTTTATGGAATTAGTGAGCAAGTTAATGCCTAAATATGA  150

seq1  CTACTGAAATTGCAAATTACTTCCTCAAGTGTACAGTATATGAGAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAATTGCAAATTACTTCCTCAAGTGTACAGTATATGAGAGTTAT  200

seq1  CACCGAGATCAGAGTTTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAGATCAGAGTTTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250

seq1  GTG  253
      |||
seq2  GTG  253


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