BAC Information

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BAC

Clone NameB6Ng01-311F05
Chromosome12 (Build37)
Map Location 62,930,506 - 62,931,655
singlet/doubletsinglet
Overlap geneLrfn5
Upstream geneLOC100040300, LOC665677, Nanog-ps2, LOC665699
Downstream geneLOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311F05.g
ACCGA103073
length1,141
definitionB6Ng01-311F05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtaggcttcttcatgagcatctctttctttagattagggaagt
tttcttctataattttgttgaagatatttactggctctttactttgggaa
tctttactctcttctatccctgttatccttaggtttggtcttcgcattgt
aataaataaataaatcatggatttatgggtatctaattaccatttctctt
ttctcttttctattttctcttttctcttttctcttttctcttttctcttt
tctcttcctttctttctttctttctttctttctttctttctttctttctt
tctttctttaactgttaaactattaggccttcttgggcctaactgctttc
ttttcttttcttttttttttaaatttaatactatttgtaatttatttttt
atactccatatttcatacctcgccctcccctcccaccctccactgctcaa
catcccacacctcctccctaccacacactgtctccatgtggattccccca
ccatccatcctatctaacctctaaactccctgggaccttcagtctcttga
gagttaggtgcatcatctctgaatgaacatagatctggaagtcctctact
gtatgtgtgttggaaacctcatatcagctggtgtatgatgtccttttggt
ggtacagtgtttgaaaatcttcaggggtccagattaattaagactgctgg
tcctcctataggattgtccttctcaaattctttcagccttccctaattca
acaacaggggtcagctgcttctgtcctttggttgggtgcaaatatatgta
tctgactctttcagcttcttgtaattgcacataaattacatacatttaat
tttcaaagataaactcaaaggtagaactattaattcattccaggtcatat
gaactgataaaatgtaattaagagtgaccccttctgaagctaacatcaca
cctagaatattaggttaatacattggtgaatatgtattatgtgtttttac
tgtagaaaaggttatgggtttgagaattctaacgtccatacatagtttca
cttaatttcaggtctctgtgcattggattgatgactgaactaaagccttt
taaatggcaatgccaattgatgccttaatgcagctagattt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62930506_62931655
seq2: B6Ng01-311F05.g_67_1207 (reverse)

seq1  AAATCATAGCTGGTATTTAAGCATACAATTGGCATTGCCATTTAAAAAGC  50
      ||||| ||||| | ||| | |||| |||||||||||||||||||||| ||
seq2  AAATC-TAGCT-GCATTAAGGCAT-CAATTGGCATTGCCATTTAAAAGGC  47

seq1  TTTTAAGTCAGTCATCAATACAATGCACCAAGAGACCTGGAAAATAAGTG  100
       ||||  |||||||||||| ||||||||  |||||||| |||| ||||||
seq2  -TTTAGTTCAGTCATCAATCCAATGCAC--AGAGACCT-GAAATTAAGTG  93

seq1  AAAAATTATGTTATGAACGTAAGAATCTCAAAAACCATTACCCTTTTCTA  150
        ||| |||| |||| |||| ||||| ||  |||||  || |||||||||
seq2  --AAACTATG-TATGGACGTTAGAAT-TCTCAAACCCATAACCTTTTCTA  139

seq1  CAGTAAAAACACATAATACATATTCA-CAATGTA-TAACCTAATATTCTA  198
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  CAGTAAAAACACATAATACATATTCACCAATGTATTAACCTAATATTCTA  189

seq1  GGTGTGATGTTAGCTTCAGAAGGGGTCACTCTTAATTACATTTTATCAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATGTTAGCTTCAGAAGGGGTCACTCTTAATTACATTTTATCAGT  239

seq1  TCATATGACCTGGAATGAATTAATAGTTCTACCTTTGAGTTTATCTTTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGACCTGGAATGAATTAATAGTTCTACCTTTGAGTTTATCTTTGA  289

seq1  AAATTAAATGTATGTAATTTATGTGCAATTACAAGAAGCTGAAAGAGTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATGTATGTAATTTATGTGCAATTACAAGAAGCTGAAAGAGTCA  339

seq1  GATACATATATTTGCACCCAACCAAAGGACAGAAGCAGCTGACCCCTGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATATATTTGCACCCAACCAAAGGACAGAAGCAGCTGACCCCTGTT  389

seq1  GTTGAATTAGGGAAGGCTGAAAGAATTTGAGAAGGACAATCCTATAGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTAGGGAAGGCTGAAAGAATTTGAGAAGGACAATCCTATAGGAG  439

seq1  GACCAGCAGTCTTAATTAATCTGGACCCCTGAAGATTTTCAAACACTGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCAGTCTTAATTAATCTGGACCCCTGAAGATTTTCAAACACTGTA  489

seq1  CCACCAAAAGGACATCATACACCAGCTGATATGAGGTTTCCAACACACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAAAGGACATCATACACCAGCTGATATGAGGTTTCCAACACACAT  539

seq1  ACAGTAGAGGACTTCCAGATCTATGTTCATTCAGAGATGATGCACCTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGAGGACTTCCAGATCTATGTTCATTCAGAGATGATGCACCTAAC  589

seq1  TCTCAAGAGACTGAAGGTCCCAGGGAGTTTAGAGGTTAGATAGGATGGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAGACTGAAGGTCCCAGGGAGTTTAGAGGTTAGATAGGATGGAT  639

seq1  GGTGGGGGAATCCACATGGAGACAGTGTGTGGTAGGGAGGAGGTGTGGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGAATCCACATGGAGACAGTGTGTGGTAGGGAGGAGGTGTGGGA  689

seq1  TGTTGAGCAGTGGAGGGTGGGAGGGGAGGGCGAGGTATGAAATATGGAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGCAGTGGAGGGTGGGAGGGGAGGGCGAGGTATGAAATATGGAGT  739

seq1  ATAAAAAATAAATTACAAATAGTATTAAATTTAAAAAAAAAAGAAAAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATAAATTACAAATAGTATTAAATTTAAAAAAAAAAGAAAAGAA  789

seq1  AAGAAAGCAGTTAGGCCCAAGAAGGCCTAATAGTTTAACAGTTAAAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCAGTTAGGCCCAAGAAGGCCTAATAGTTTAACAGTTAAAGAAA  839

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGA  889

seq1  GAAAAGAGAAAAGAGAAAAGAGAAAAGAGAAAAGAGAAAATAGAAAAGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGAAAAGAGAAAAGAGAAAAGAGAAAAGAGAAAATAGAAAAGAG  939

seq1  AAAAGAGAAATGGTAATTAGATACCCATAAATCCATGATTTATTTATTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAATGGTAATTAGATACCCATAAATCCATGATTTATTTATTTA  989

seq1  TTACAATGCGAAGACCAAACCTAAGGATAACAGGGATAGAAGAGAGTAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGCGAAGACCAAACCTAAGGATAACAGGGATAGAAGAGAGTAAA  1039

seq1  GATTCCCAAAGTAAAGAGCCAGTAAATATCTTCAACAAAATTATAGAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCAAAGTAAAGAGCCAGTAAATATCTTCAACAAAATTATAGAAGA  1089

seq1  AAACTTCCCTAATCTAAAGAAAGAGATGCTCATGAAGAAGCCTACAGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCCTAATCTAAAGAAAGAGATGCTCATGAAGAAGCCTACAGAAT  1139

seq1  TC  1150
      ||
seq2  TC  1141


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