BAC Information

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BAC

Clone NameB6Ng01-311O11
Chromosome12 (Build37)
Map Location 115,288,711 - 115,330,854
singlet/doubletdoublet
Overlap geneIgh, Ighv14-3, EG629812, Ighv6-2
Upstream genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2
Downstream geneIghv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311O11.bB6Ng01-311O11.g
ACCGA103507GA103508
length1,1251,095
definitionB6Ng01-311O11.b B6Ng01-311O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,329,723 - 115,330,854)(115,288,711 - 115,289,790)
sequence
gaattcatgtaaacaaaatcatctataatatgcaaaatattttgtgactg
ctaacttgattttaacaatgccttttagcacagcttaagtatatgtggta
gttaaagaagttcacatacatatatgtacataaagtattgggacatttga
aattttcaaatcaaagacaatctttttcgggagtgaaatgtatttttcta
tcatcctgagttttatatcaaaatgaatgcatctacacactgatatgcag
catatatttggggattaccatgtttctgtaaaagtcatatgttagtacac
acagcaaccccaaatgtactctctgagcttctattctcttgttctactcc
acaactgtcattcactaagcttatagcaaatacatctctttatcactcat
ggcatgtcatgcaataaaaggagcctgaatttggttaaatcggatccaga
aagacaagagtgcttcgtgaagacacagctataaatttctatgtagaagg
atccatgggaatgggagcaatccattgtgtttataatttacatgaatata
tccaattttcctagatataaaagttgatttactaaaaagattaaatcaca
gccccaaattttgtaagtcctcattttttctcattaggaaattatattat
agatgtgagagctaatttataaatcatatactttaatttttcatttcacc
agtgatgtgagtgttctgtcccaactgcatctacaaaagtagggaaaaga
tctgcgagaatacacacagatactctatcaattgttctatatttggttac
ttactccatcaccagcagaattggtatgtactagagacaaagacattcaa
acataaactactgttgagaaatagatacatgatgaattatgtcaaaattt
aacagttatatgaacatggtactgaaatctaggctattgcaatatagtaa
agatttaagtatagagataataaaaatgcatgttgcattgagaaaactga
agatgatactatgagcaaagaaaactgatctgaacctggtagtagatgcc
attgatataaatgaataactgtcctttttatttgtgctttcccctcagca
aagaactactaactgtactctgacc
gaattcagtagatactgtacaacataaagacaatgaacctgatggaaacc
aagtgtgctaaaagagtcaaatgaacatgtaagaaagattatagcaacac
aggcaaattcctctccattaacctaaggtcatctgtaatagcaagtagaa
aacaatatatttcagtatataatttcacaaaaatggaaaaagaccagatg
atgtatgagggtaggaaggcaagattggaggtcaaagttattttgttaaa
aatcccagaatataaatgaaaaacatggggtatatgggcattttagtcac
aaatatctgaaaaagaatctatctgttgatatacatctaaccttacactc
aagaatttaagaagaaccaaagcatgttacatactcacacacacagagac
acacacagacacacacagacacacacacacacacacagacacacacacac
tcacacacacacacacacacacacacacacacagacacagacacacacac
acatacacactccacaaaactctatgcacagagagcctatattccattaa
aattgcaaaggaactcaaccctgaatgtttcctaatgtagagagataatg
gtgtcttaacaaaagactggaaaattttcaaaggaatcaagaatgtgatc
aaaaaatgagcagatgacagggagcttatagcattttctcagcggtttgg
ataaacttaatcccattttaggttcagatattgagaaatttaggatcaga
acaggtactcctcagcatattctgtacgaaggtgaccatgatgtgttaga
tctgatcagatgctcaagcctacataaaactatggagaagtggacatttc
tttaaatgtcttataattcttgtaaagtataacttctttcaagaagctaa
aaatactgtagcaaataaaaagcaaatgtgctacatttatgacaacccta
accttcatttccagaaaccagttaaaaattgtattctttggttgagtcag
tatgtacaatcccagccatgcccaggccaaagagggaagggttagacaca
gggaagattgaacgacaacgcaatcagttcatctagtcttgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115329723_115330854
seq2: B6Ng01-311O11.b_48_1172 (reverse)

seq1  GGTCAGGAGGTACAGGTTAGTAGTTCTTTGCCTGAGGGGAAACCACAAAA  50
      ||||||   ||||| ||||||||||||||| ||||||||||| |||||| 
seq2  GGTCAG--AGTACA-GTTAGTAGTTCTTTG-CTGAGGGGAAAGCACAAAT  46

seq1  TAAAAGGACAGT--ATCATTTATATCCATGGGCATCTACTACCAGGTTCA  98
       |||||||||||   ||||||||||| || ||||||||||||||||||||
seq2  AAAAAGGACAGTTATTCATTTATATCAAT-GGCATCTACTACCAGGTTCA  95

seq1  GATCCAAGTTTTCTTTGCTCATAGTATCCATCCTTCAGTTTTCTCAATGC  148
      ||||  ||||||||||||||||||||| ||| ||||||||||||||||||
seq2  GATC--AGTTTTCTTTGCTCATAGTAT-CAT-CTTCAGTTTTCTCAATGC  141

seq1  AACATGCA-TTTTATATCCTCTATACTTAAATCTTTACTTATATTGCAAT  197
      |||||||| ||||||   |||||||||||||||||||| |||||||||||
seq2  AACATGCATTTTTATTATCTCTATACTTAAATCTTTAC-TATATTGCAAT  190

seq1  AGCCTAGATTTCAGTACCATGTTCATATAACTGTTAAATTTTGACATAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGATTTCAGTACCATGTTCATATAACTGTTAAATTTTGACATAAT  240

seq1  TCATCATGTATCTATTTCTCAACAGTAGTTTATGTTTGAATGTCTTTGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGTATCTATTTCTCAACAGTAGTTTATGTTTGAATGTCTTTGTC  290

seq1  TCTAGTACATACCAATTCTGCTGGTGATGGAGTAAGTAACCAAATATAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTACATACCAATTCTGCTGGTGATGGAGTAAGTAACCAAATATAGA  340

seq1  ACAATTGATAGAGTATCTGTGTGTATTCTCGCAGATCTTTTCCCTACTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGATAGAGTATCTGTGTGTATTCTCGCAGATCTTTTCCCTACTTT  390

seq1  TGTAGATGCAGTTGGGACAGAACACTCACATCACTGGTGAAATGAAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGCAGTTGGGACAGAACACTCACATCACTGGTGAAATGAAAAAT  440

seq1  TAAAGTATATGATTTATAAATTAGCTCTCACATCTATAATATAATTTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATATGATTTATAAATTAGCTCTCACATCTATAATATAATTTCCT  490

seq1  AATGAGAAAAAATGAGGACTTACAAAATTTGGGGCTGTGATTTAATCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAAAATGAGGACTTACAAAATTTGGGGCTGTGATTTAATCTTT  540

seq1  TTAGTAAATCAACTTTTATATCTAGGAAAATTGGATATATTCATGTAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAATCAACTTTTATATCTAGGAAAATTGGATATATTCATGTAAAT  590

seq1  TATAAACACAATGGATTGCTCCCATTCCCATGGATCCTTCTACATAGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACACAATGGATTGCTCCCATTCCCATGGATCCTTCTACATAGAAA  640

seq1  TTTATAGCTGTGTCTTCACGAAGCACTCTTGTCTTTCTGGATCCGATTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGCTGTGTCTTCACGAAGCACTCTTGTCTTTCTGGATCCGATTTA  690

seq1  ACCAAATTCAGGCTCCTTTTATTGCATGACATGCCATGAGTGATAAAGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTCAGGCTCCTTTTATTGCATGACATGCCATGAGTGATAAAGAG  740

seq1  ATGTATTTGCTATAAGCTTAGTGAATGACAGTTGTGGAGTAGAACAAGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGCTATAAGCTTAGTGAATGACAGTTGTGGAGTAGAACAAGAG  790

seq1  AATAGAAGCTCAGAGAGTACATTTGGGGTTGCTGTGTGTACTAACATATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGCTCAGAGAGTACATTTGGGGTTGCTGTGTGTACTAACATATG  840

seq1  ACTTTTACAGAAACATGGTAATCCCCAAATATATGCTGCATATCAGTGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACAGAAACATGGTAATCCCCAAATATATGCTGCATATCAGTGTG  890

seq1  TAGATGCATTCATTTTGATATAAAACTCAGGATGATAGAAAAATACATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCATTCATTTTGATATAAAACTCAGGATGATAGAAAAATACATTT  940

seq1  CACTCCCGAAAAAGATTGTCTTTGATTTGAAAATTTCAAATGTCCCAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCGAAAAAGATTGTCTTTGATTTGAAAATTTCAAATGTCCCAATA  990

seq1  CTTTATGTACATATATGTATGTGAACTTCTTTAACTACCACATATACTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTACATATATGTATGTGAACTTCTTTAACTACCACATATACTTA  1040

seq1  AGCTGTGCTAAAAGGCATTGTTAAAATCAAGTTAGCAGTCACAAAATATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCTAAAAGGCATTGTTAAAATCAAGTTAGCAGTCACAAAATATT  1090

seq1  TTGCATATTATAGATGATTTTGTTTACATGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  TTGCATATTATAGATGATTTTGTTTACATGAATTC  1125

seq1: chr12_115288711_115289790
seq2: B6Ng01-311O11.g_67_1161

seq1  GAATTCAGTAGATACTGTACAACATAAAGACAATGAACCTGATGGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGATACTGTACAACATAAAGACAATGAACCTGATGGAAACC  50

seq1  AAGTGTGCTAAAAGAGTCAAATGAACATGTAAGAAAGATTATAGCAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCTAAAAGAGTCAAATGAACATGTAAGAAAGATTATAGCAACAC  100

seq1  AGGCAAATTCCTCTCCATTAACCTAAGGTCATCTGTAATAGCAAGTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATTCCTCTCCATTAACCTAAGGTCATCTGTAATAGCAAGTAGAA  150

seq1  AACAATATATTTCAGTATATAATTTCACAAAAATGGAAAAAGACCAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATATTTCAGTATATAATTTCACAAAAATGGAAAAAGACCAGATG  200

seq1  ATGTATGAGGGTAGGAAGGCAAGATTGGAGGTCAAAGTTATTTTGTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAGGGTAGGAAGGCAAGATTGGAGGTCAAAGTTATTTTGTTAAA  250

seq1  AATCCCAGAATATAAATGAAAAACATGGGGTATATGGGCATTTTAGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGAATATAAATGAAAAACATGGGGTATATGGGCATTTTAGTCAC  300

seq1  AAATATCTGAAAAAGAATCTATCTGTTGATATACATCTAACCTTACACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTGAAAAAGAATCTATCTGTTGATATACATCTAACCTTACACTC  350

seq1  AAGAATTTAAGAAGAACCAAAGCATGTTACATACTCACACACACAGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTAAGAAGAACCAAAGCATGTTACATACTCACACACACAGAGAC  400

seq1  ACACACAGACACACACAGACACACACACACACACACAGACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACACACACAGACACACACACACACACACAGACACACACACAC  450

seq1  TCACACACACACACACACACACACACACACACAGACACAGACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACAGACACAGACACACACAC  500

seq1  ACATACACACTCCACAAAACTCTATGCACAGAGAGCCTATATTCCATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACTCCACAAAACTCTATGCACAGAGAGCCTATATTCCATTAA  550

seq1  AATTGCAAAGGAACTCAACCCTGAATGTTTCCTAATGTAGAGAGATAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAAAGGAACTCAACCCTGAATGTTTCCTAATGTAGAGAGATAATG  600

seq1  GTGTCTTAACAAAAGACTGGAAAATTTTCAAAGGAATCAAGAATGTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTAACAAAAGACTGGAAAATTTTCAAAGGAATCAAGAATGTGATC  650

seq1  AAAAAATGAGCAGATGACA-GGAGCTTATAGCATTTTCTCAGCAGGTTTG  699
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  AAAAAATGAGCAGATGACAGGGAGCTTATAGCATTTTCTCAGC-GGTTTG  699

seq1  GATAAACTTAATCCCATTTTAGGTTCAGATATTGAGAAATTTAGGATCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTTAATCCCATTTTAGGTTCAGATATTGAGAAATTTAGGATCAG  749

seq1  AACAGGTACTCCTCAGCATATTCTGTACGAAGGTGACCATGATGTGTTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTACTCCTCAGCATATTCTGTACGAAGGTGACCATGATGTGTTAG  799

seq1  ATCTGATCAGATGCTCAAGCCTACATAAAACTATGGAGAAGTGGACA-TT  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCTGATCAGATGCTCAAGCCTACATAAAACTATGGAGAAGTGGACATTT  849

seq1  CTTTAAATGTCTTATAATTCTTGTAAAGTATAACTTCTTTCAAGAAGCT-  897
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTTAAATGTCTTATAATTCTTGTAAAGTATAACTTCTTTCAAGAAGCTA  899

seq1  AAAATACTGTAGCAAAT-AAAAGCAAATGTGCTACATTTATGACAA-CCT  945
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  AAAATACTGTAGCAAATAAAAAGCAAATGTGCTACATTTATGACAACCCT  949

seq1  AA-CTTCA-TTCCAGAAACCCAGGTAAAAA-TGTA-TCTT--GTTGAGTC  989
      || ||||| ||||||||| |||| |||||| |||| ||||  ||||||||
seq2  AACCTTCATTTCCAGAAA-CCAGTTAAAAATTGTATTCTTTGGTTGAGTC  998

seq1  AAGTATGTACAATCCCAG-CATGCCAAGG-CAAAGAGGGAAGGGTTAGAC  1037
       ||||||||||||||||| |||||| ||| ||||||||||||||||||||
seq2  -AGTATGTACAATCCCAGCCATGCCCAGGCCAAAGAGGGAAGGGTTAGAC  1047

seq1  A---GGAAGATTG-ACGACAAACGC-ATCAG-TCATCTAAGTC-TGTTAT  1080
      |   ||||||||| ||||| ||||| ||||| |||||| |||| ||||||
seq2  ACAGGGAAGATTGAACGAC-AACGCAATCAGTTCATCT-AGTCTTGTTAT  1095