BAC Information

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BAC

Clone NameB6Ng01-312P18
Chromosome12 (Build37)
Map Location 32,875,711 - 32,996,158
singlet/doubletdoublet
Overlap genePik3cg
Upstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
Downstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312P18.bB6Ng01-312P18.g
ACCGA104317GA104318
length1,109901
definitionB6Ng01-312P18.b B6Ng01-312P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,875,711 - 32,876,853)(32,995,252 - 32,996,158)
sequence
gaattccatgcatttatctaacacattctgagctgttgtcatgccctgtc
tgaagctagtcatatcaacctcactttcaagagagtaaaactgagcgctt
tctcttctttaagtagtaaagtccttctgctccccccatgaaatgtgtcc
agtttttggaaactgtctgaaacccaactgagtgtgtgcaaaagagcaca
tacccaaactcctaaaactgagccgagagtgtgagtcatgccattaccaa
caagacagccagccagtagatcaaagcacaagttacaaaacaacacgagg
aagtagctcttcccctatagttcaaggcgcatgtcctttcccaagctcat
gctggatttgaaggaaaagccttctccctcagatgtggagtgcaaatcaa
accacagtgaaggcacactaaggaaggtggctgtgttcagacaaggcaag
gcaaaggtcactcttggtttctgttttgtgactctgttgttatatattca
gtatgcttacaaattttctgaattgtattcattcacagctattataagat
gctctcattgtgtgtttatatccaaatactcctgtgggggcttgtttgca
ggctagtggaaccagagctcacagcagagcctgtggccaagctgatgaga
ctgccaacaagaaaaggactactcttaataccagcaaaatcagtatgtgc
aacaagattcccctgttggtattatgataagtacacacacagtaccaaaa
atcaagtgaagctcacgattgtttgcaagccccgaaacatagttgaagtt
tgaatcttctactcaaagccttgagtagatcagtctccataactgtcctt
ctttgaagctgtcctgagcacctagcctgccctcagaggtctgtggtccc
cggggccaccccttatggagcatttttacttgctgtttggttttagtgag
caaatccctgaaagccctcactttgtatgtcctttgtggaatgaacagag
ttgaggaggagaaggagggcgccattatcataaaggtaagggagagcgat
ttctacagtgtgatcgttggtactgcagaggtgaggaaggactgcgtgac
atacctgga
gaattccagtaagaaaagatgctctgggaattgagaagggaaataaacat
agttcttgcaggcaaattttgcatcaaaggaaaggttttctatgaaaggt
gtctctatatctttcccaagcagattccccaaagttgacacaagactagt
gaacaaaggcagcactgggtggcaaaagtaaagactctgactttgcagat
cacacatccccagcacgtgtaatacagttaaatctatgacaaaaaggtgg
gttccatctaccattgcttcgggtgagaggagaaattgccaaagcagtgg
gagccatcggtgtttaattaacatggagctacagaagcccctcaaaaaat
gtccaaacagcaagaagagacctaggaagaagccatggcagtacaaaaac
caaaggaggttaatgaagggagtgaaaaggtaattgggtgaggaatttgc
agcacagaaagtcactggtgactgcagaaatcccttcgctagatttatag
agcccaaacctttccactcagtgagcaacagagaggcacaaagggtcttt
agagtctgacaatgaggtagggaagcaggtgatctctaagggtgattgca
cattcagggatagaacatgtctttaatttgtttgaaatagagtctgaaat
aggctactggatctcgggagtaagatgaaactaagaaacataggaagcaa
aaaacaaacaaaaacaaaaaacaaaacaaaacaaaaacaaaaaaaaaaac
accagagacaagaaagaatggctgtccgttctgtcaaaatccccaggcaa
taaaggacagaaaatactctgttgtgtttggtaattaaaccactggtaag
ttttggtaattaaaccaacactggttggttggttggttggttgggttggt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32875711_32876853
seq2: B6Ng01-312P18.b_49_1157

seq1  GAATTCCATGCATTTATCTAACACATTCTGAGCTGTTGTCATGCCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCATTTATCTAACACATTCTGAGCTGTTGTCATGCCCTGTC  50

seq1  TGAAGCTAGTCATATCAACCTCACTTTCAAGAGAGTAAAACTGAGCGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTAGTCATATCAACCTCACTTTCAAGAGAGTAAAACTGAGCGCTT  100

seq1  TCTCTTCTTTAAGTAGTAAAGTCCTTCTGCTCCCCCCATGAAATGTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTTTAAGTAGTAAAGTCCTTCTGCTCCCCCCATGAAATGTGTCC  150

seq1  AGTTTTTGGAAACTGTCTGAAACCCAACTGAGTGTGTGCAAAAGAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGGAAACTGTCTGAAACCCAACTGAGTGTGTGCAAAAGAGCACA  200

seq1  TACCCAAACTCCTAAAACTGAGCCGAGAGTGTGAGTCATGCCATTACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAACTCCTAAAACTGAGCCGAGAGTGTGAGTCATGCCATTACCAA  250

seq1  CAAGACAGCCAGCCAGTAGATCAAAGCACAAGTTACAAAACAACACGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGCCAGCCAGTAGATCAAAGCACAAGTTACAAAACAACACGAGG  300

seq1  AAGTAGCTCTTCCCCTATAGTTCAAGGCGCATGTCCTTTCCCAAGCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTCTTCCCCTATAGTTCAAGGCGCATGTCCTTTCCCAAGCTCAT  350

seq1  GCTGGATTTGAAGGAAAAGCCTTCTCCCTCAGATGTGGAGTGCAAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTTGAAGGAAAAGCCTTCTCCCTCAGATGTGGAGTGCAAATCAA  400

seq1  ACCACAGTGAAGGCACACTAAGGAAGGTGGCTGTGTTCAGACAAGGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTGAAGGCACACTAAGGAAGGTGGCTGTGTTCAGACAAGGCAAG  450

seq1  GCAAAGGTCACTCTTGGTTTCTGTTTTGTGACTCTGTTGTTATATATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTCACTCTTGGTTTCTGTTTTGTGACTCTGTTGTTATATATTCA  500

seq1  GTATGCTTACAAATTTTCTGAATTGTATTCATTCACAGCTATTATAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTACAAATTTTCTGAATTGTATTCATTCACAGCTATTATAAGAT  550

seq1  GCTCTCATTGTGTGTTTATATCCAAATACTCCTGTGGGGGCTTGTTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATTGTGTGTTTATATCCAAATACTCCTGTGGGGGCTTGTTTGCA  600

seq1  GGCTAGTGGAACCAGAGCTCACAGCAGAGCCTGTGGCCAAGCTGATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTGGAACCAGAGCTCACAGCAGAGCCTGTGGCCAAGCTGATGAGA  650

seq1  CTGCCAACAAGAAAAGGACTACTCTTAATACCAGCAAAATCAGTATGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAACAAGAAAAGGACTACTCTTAATACCAGCAAAATCAGTATGTGC  700

seq1  AACAAGATTCCCCTGTTGGTATTATGATAAGTACACACACAGTACCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATTCCCCTGTTGGTATTATGATAAGTACACACACAGTACCAAAA  750

seq1  ATCAAGTGAAGCTCACGATTGTTTGCAAGCCCCGAAACATAGTTGAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGAAGCTCACGATTGTTTGCAAGCCCCGAAACATAGTTGAAGTT  800

seq1  TGAATCTTCTACTCAAAGCCTTGAGTAGATCAGTCTCCATAACTGTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTCTACTCAAAGCCTTGAGTAGATCAGTCTCCATAACTGTCCTT  850

seq1  CTTTGAAGCTGTCCTGAGCACCTAGCCTGCCCTCAGAGGTCTGTGGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGCTGTCCTGAGCACCTAGCCTGCCCTCAGAGGTCTGTGGTCCC  900

seq1  CGGGGCCACCCCTTATGGAGCATTTTTACTTGCTGTTTGGTTTTAGTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCCACCCCTTATGGAGCATTTTTACTTGCTGTTTGGTTTTAGTGAG  950

seq1  CAAATCCCTGAAAG-CCTCACTTTGTATGTCC-TTGTGGAATGAACAGAG  998
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CAAATCCCTGAAAGCCCTCACTTTGTATGTCCTTTGTGGAATGAACAGAG  1000

seq1  GTGAGGAGGAGGAAGGAGGGCGGCCATATCATAAGGGT-AGGGAGAGGCG  1047
       ||||||||| ||||||||||| |  |||||||| ||| ||||||| |||
seq2  TTGAGGAGGA-GAAGGAGGGCGCCATTATCATAAAGGTAAGGGAGA-GCG  1048

seq1  ATTTCTACAGTGTGATCGGTTTGTACTGGCAGGAGGTGAGG-AGGACTGC  1096
      ||||||||||||||||| ||| ||||| ||| ||||||||| ||||||||
seq2  ATTTCTACAGTGTGATC-GTTGGTACT-GCA-GAGGTGAGGAAGGACTGC  1095

seq1  GGTGACATACCTGGAATTTCTGGAAGGACTGCGGTGACATACCTGGA  1143
       ||||||||||||||                                
seq2  -GTGACATACCTGGA--------------------------------  1109

seq1: chr12_32995252_32996158
seq2: B6Ng01-312P18.g_73_973 (reverse)

seq1  AACCAACCAACCAACCAACCAACCAACCAACCAACCAGTGTTGGTTTAAT  50
          |||||||   ||||||||||||||||||||||||||||||||||||
seq2  ----AACCAAC---CCAACCAACCAACCAACCAACCAGTGTTGGTTTAAT  43

seq1  TACCAAAACTTACCAGTGGTTTAATTACCAAACACAACAGAGTATTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAACTTACCAGTGGTTTAATTACCAAACACAACAGAGTATTTTCT  93

seq1  GTCCTTTATTGCCTGGGGATTTTGACAGAACGGACAGCCATTCTTTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTATTGCCTGGGGATTTTGACAGAACGGACAGCCATTCTTTCTTG  143

seq1  TCTCTGGTG-TTTTTTTTTTGTTTTTGTTTTGTTTTGTTTTTTGTTTTTG  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTGTTTTTTTTTTTGTTTTTGTTTTGTTTTGTTTTTTGTTTTTG  193

seq1  TTTGTTTTTTGCTTCCTATGTTTCTTAGTTTCATCTTACTCCCGAGATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTGCTTCCTATGTTTCTTAGTTTCATCTTACTCCCGAGATCC  243

seq1  AGTAGCCTATTTCAGACTCTATTTCAAACAAATTAAAGACATGTTCTATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCTATTTCAGACTCTATTTCAAACAAATTAAAGACATGTTCTATC  293

seq1  CCTGAATGTGCAATCACCCTTAGAGATCACCTGCTTCCCTACCTCATTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGTGCAATCACCCTTAGAGATCACCTGCTTCCCTACCTCATTGT  343

seq1  CAGACTCTAAAGACCCTTTGTGCCTCTCTGTTGCTCACTGAGTGGAAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTAAAGACCCTTTGTGCCTCTCTGTTGCTCACTGAGTGGAAAGG  393

seq1  TTTGGGCTCTATAAATCTAGCGAAGGGATTTCTGCAGTCACCAGTGACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCTCTATAAATCTAGCGAAGGGATTTCTGCAGTCACCAGTGACTT  443

seq1  TCTGTGCTGCAAATTCCTCACCCAATTACCTTTTCACTCCCTTCATTAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGCAAATTCCTCACCCAATTACCTTTTCACTCCCTTCATTAAC  493

seq1  CTCCTTTGGTTTTTGTACTGCCATGGCTTCTTCCTAGGTCTCTTCTTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGGTTTTTGTACTGCCATGGCTTCTTCCTAGGTCTCTTCTTGCT  543

seq1  GTTTGGACATTTTTTGAGGGGCTTCTGTAGCTCCATGTTAATTAAACACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGACATTTTTTGAGGGGCTTCTGTAGCTCCATGTTAATTAAACACC  593

seq1  GATGGCTCCCACTGCTTTGGCAATTTCTCCTCTCACCCGAAGCAATGGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCCCACTGCTTTGGCAATTTCTCCTCTCACCCGAAGCAATGGTA  643

seq1  GATGGAACCCACCTTTTTGTCATAGATTTAACTGTATTACACGTGCTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACCCACCTTTTTGTCATAGATTTAACTGTATTACACGTGCTGGG  693

seq1  GATGTGTGATCTGCAAAGTCAGAGTCTTTACTTTTGCCACCCAGTGCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGATCTGCAAAGTCAGAGTCTTTACTTTTGCCACCCAGTGCTGC  743

seq1  CTTTGTTCACTAGTCTTGTGTCAACTTTGGGGAATCTGCTTGGGAAAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCACTAGTCTTGTGTCAACTTTGGGGAATCTGCTTGGGAAAGAT  793

seq1  ATAGAGACACCTTTCATAGAAAACCTTTCCTTTGATGCAAAATTTGCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGACACCTTTCATAGAAAACCTTTCCTTTGATGCAAAATTTGCCTG  843

seq1  CAAGAACTATGTTTATTTCCCTTCTCAATTCCCAGAGCATCTTTTCTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTATGTTTATTTCCCTTCTCAATTCCCAGAGCATCTTTTCTTAC  893

seq1  TGGAATTC  907
      ||||||||
seq2  TGGAATTC  901