BAC Information

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BAC

Clone NameB6Ng01-313K17
Chromosome14 (Build37)12 (Build37)
Map Location 3,059,394 - 3,059,42580,425,412 - 80,426,419
singlet/doubletsingletsinglet
Overlap geneLOC100040671
Upstream geneLOC100040452, LOC100040657, LOC100040682
Downstream geneLOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313K17.bB6Ng01-313K17.g
ACCGA104814GA104815
length7551,003
definitionB6Ng01-313K17.b B6Ng01-313K17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,059,394 - 3,059,425)(80,425,412 - 80,426,419)
sequence
gaattctgtggactgtatcttgggtattctgtacttttactggggcgggg
gggtgctaatatccacttattagtgagtacatacatgcatgtctttttgg
gtctgagttacctcactcaggatgatattttctagttccatccatttgcc
tgcaaaactcaggatgtccttattcttaatagctgagtagtattccagtg
tgtagatgaaccacattttctgtatctactcttctgtcgtggaacatctg
ggttgtttccagcttctggctatcacaaataaggtcactttgaacatagt
ggaacacatgtacctgtgacatggtgggtcatcttttgggtatattccca
agagtggtatagctgggtcttcaggtagatctatttccaattttctgagg
aacctccagattgatatccagagtggttgtaccagtttgcaatcccacca
gcaatggaggagtgttcctctttctccacatcttctccaacatgtgttgt
cacctgaggttttgatcttagccattctgattggtgtaaggtggaatctc
agggtcactttgatttgcatttctctgatcactaaggactttgaacattt
ctttagaacttctcagctgtaaattctcggattagttctatatcccatca
gtcaacaagctgaagtgcccaagtgaggatgtctcagtcccacttgggag
agagaagaaagcaatcacaagtggggaaggagggagggacctgggaggga
aagtg
gaattcagtattcagaaaatagctttttgttaacaagaagtaactggata
gcattaatttggttaaacaataatttcctatttaccaaggaactactaaa
tagctttaaattttaattgagaaagcatattttctaggaagagacaaggc
aactgagatatgttattattaggaaacagtaccatacttattgaaacaga
ctttgttcattcaagcaactgaaagctttttctaacatttctaatatgta
aaagtagctgctatgaaaatgttatctgtaaacattatttccagaaataa
aatcttgggaatattgttgcttgttggaaatttgatgagacttagaaccc
ttgatagccaacctctgataattctcacagaggccacgtgtattccaaac
tggtgttttgagccttttgcttacgcctgacatacggatacgtcttagta
ctttcccatgtggagtgtgttggggactcagcagtgtctctctcttttag
tattcactattctctcttgtatgctattcccttctctcatagactggttg
agattgcggaatctcgttttccacaatattttaacactgaggaaaaattg
cttctgaccagcagtagagttcatctttgccgagagctcacctgtgaggg
gcttctacaaaggtaggcggtttcacattactaaaacatcttatatttta
gtaatgctttgaaagttttctcctccccgttttcagcttcttagtaaaat
aattcttatataatggagttaaagaaataataattttggggctggagaga
tggctcaatggtttagagcactgactgctctttccagaggtcctgagttc
aattcccagcaaccacatagtgactcacaaccatcagtaatgggatccga
agtcctcttctgatgtgtctgaagacagctacagtgtatcaatacgtaaa
gtaatacatctttaaaaaaataataattgtgccttctcatcatgtagttt
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_3059394_3059425
seq2: B6Ng01-313K17.b_770_801 (reverse)

seq1  CACTTTCCCTCCCAGGTCCTTCCCTCCTTCCC  32
      ||||||||||||||||||| ||||||||||||
seq2  CACTTTCCCTCCCAGGTCCCTCCCTCCTTCCC  32

seq1: chr12_80425412_80426419
seq2: B6Ng01-313K17.g_68_1070

seq1  GAATTCAGTATTCAGAAAATAGCTTTTTGTTAACAAGAAGTAACTGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTCAGAAAATAGCTTTTTGTTAACAAGAAGTAACTGGATA  50

seq1  GCATTAATTTGGTTAAACAATAATTTCCTATTTACCAAGGAACTACTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATTTGGTTAAACAATAATTTCCTATTTACCAAGGAACTACTAAA  100

seq1  TAGCTTTAAATTTTAATTGAGAAAGCATATTTTCTAGGAAGAGACAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTAAATTTTAATTGAGAAAGCATATTTTCTAGGAAGAGACAAGGC  150

seq1  AACTGAGATATGTTATTATTAGGAAACAGTACCATACTTATTGAAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGATATGTTATTATTAGGAAACAGTACCATACTTATTGAAACAGA  200

seq1  CTTTGTTCATTCAAGCAACTGAAAGCTTTTTCTAACATTTCTAATATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCATTCAAGCAACTGAAAGCTTTTTCTAACATTTCTAATATGTA  250

seq1  AAAGTAGCTGCTATGAAAATGTTATCTGTAAACATTATTTCCAGAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGCTGCTATGAAAATGTTATCTGTAAACATTATTTCCAGAAATAA  300

seq1  AATCTTGGGAATATTGTTGCTTGTTGGAAATTTGATGAGACTTAGAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGGGAATATTGTTGCTTGTTGGAAATTTGATGAGACTTAGAACCC  350

seq1  TTGATAGCCAACCTCTGATAATTCTCACAGAGGCCACGTGTATTCCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGCCAACCTCTGATAATTCTCACAGAGGCCACGTGTATTCCAAAC  400

seq1  TGGTGTTTTGAGCCTTTTGCTTACGCCTGACATACGGATACGTCTTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTTGAGCCTTTTGCTTACGCCTGACATACGGATACGTCTTAGTA  450

seq1  CTTTCCCATGTGGAGTGTGTTGGGGACTCAGCAGTGTCTCTCTCTTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCATGTGGAGTGTGTTGGGGACTCAGCAGTGTCTCTCTCTTTTAG  500

seq1  TATTCACTATTCTCTCTTGTATGCTATTCCCTTCTCTCATAGACTGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTATTCTCTCTTGTATGCTATTCCCTTCTCTCATAGACTGGTTG  550

seq1  AGATTGCGGAATCTCGTTTTCCACAATATTTTAACACTGAGGAAAAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCGGAATCTCGTTTTCCACAATATTTTAACACTGAGGAAAAATTG  600

seq1  CTTCTGACCAGCAGTAGAGTTCATCTTTGCCGAGAGCTCACCTGTGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACCAGCAGTAGAGTTCATCTTTGCCGAGAGCTCACCTGTGAGGG  650

seq1  GCTTCTACAAAGGTAGGCGGTTTCACATTACTAAAACATCTTATATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACAAAGGTAGGCGGTTTCACATTACTAAAACATCTTATATTTTA  700

seq1  GTAATGCTTTGAAAGTTTTCTCCTCCCCGTTTTCAGCTTCTTAGTAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCTTTGAAAGTTTTCTCCTCCCCGTTTTCAGCTTCTTAGTAAAAT  750

seq1  AATTCTTATATAATGGAGTTAAAGAAATAATAATTT--GGGCTGGAGAGA  798
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  AATTCTTATATAATGGAGTTAAAGAAATAATAATTTTGGGGCTGGAGAGA  800

seq1  TGGCTCAATGGTTTAGAGCACTGACTGCTC-TTCCAGAGGTCCTGAGTTC  847
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGCTCAATGGTTTAGAGCACTGACTGCTCTTTCCAGAGGTCCTGAGTTC  850

seq1  AATTCCCAGCAACCACATAGTGACTCACAACCATCAGTAATGGGATCCGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAGCAACCACATAGTGACTCACAACCATCAGTAATGGGATCCGA  900

seq1  AGTCCTCTTCTGATGTGTCTGAAGACAGCTACAGTGTATTCATATACATA  947
      |||||||||||||||||||||||||||||||||||||| ||| |||| ||
seq2  AGTCCTCTTCTGATGTGTCTGAAGACAGCTACAGTGTA-TCA-ATACGTA  948

seq1  AAGTAAATACATCTTTAAAAAAAATAATAATTTGTGCCTTCTTCATTCAT  997
      |||| ||||||||||| ||||||||||||| |||||||||| ||| ||| 
seq2  AAGT-AATACATCTTT-AAAAAAATAATAA-TTGTGCCTTC-TCA-TCA-  992

seq1  TGTAGTTTTTT  1008
      |||||||||||
seq2  TGTAGTTTTTT  1003