BAC Information

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BAC

Clone NameB6Ng01-313K20
Chromosome12 (Build37)
Map Location 114,116,181 - 114,117,330
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132
Downstream geneJag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313K20.bB6Ng01-313K20.g
ACCGA104820GA104821
length1,1461,160
definitionB6Ng01-313K20.b B6Ng01-313K20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagtgagtttgaagccagtctgggcttccttggaaccaaataa
cccttatcctagagactggcttcagtggcttggtgtgacatggacagtga
gccttgtgggagaccactgtaggaatctggaaatgtccaacatgcaggga
taattccttacacaaaggtccctcctgaagaccagagggagggtcaggct
acaaggggcgcttgagtgttgctcctctgttcaaatacctctcatggctc
ccagctgcctcctgatgatgctaaagcccagtccccaccctgtaccccat
ttctccacctgaggattccatacattttttcctggtccacccttgtcgct
ctctactctctgccttttaactcaacccagaggccacaccccatgtgcac
ttcctgcctctccctcctctgtgccctactataaccacgatgtcacccat
aattcctgttaaaggatctctctgaggggtactgatccatccagtgctaa
ccctgagtctgcacgcagatgggtcacacgatggtcggcttgtgtgaagg
aggggacagctgggagctcagtccactagttttcctacagctgagccctc
aagcccagggaggctatgttcacctcaggttacagcagggttggtacgac
ttaagtcaatgatgaaggttctagaagggtttgtggtcacatgagggatg
aaacacacaatcctaaaatatgcttcttcgatcaccatgctttcaggtgc
tcccagcacccaccactggcctccttccccacagtctgtgcctcatgcag
gaacctctgagttcctgggctctacagcctgcttccagctcctcttccat
cagaactatagagaaactccactaaattctctacccaatagtaatctcag
ttggccagtcggtcgccttctgcagccatgagctgcagcagccacctggc
tctagacacctaataattgggagatcagtctccgaagccttgccctaggc
tagcctagccactttcctgagggtcttgtcagtccattgcatcacgttaa
gtgccaagcctgcactgctaggaactggagccacgacttagggtacagtc
atcggaaggctcctgcaagttcagtcttgcctgaagggatcctctg
gaattcagtctgtccgtgagggtgtttcctggaaggactgagggaggcag
gatgacccttccatagagcagctggcaccttctgacagcagcccagatgt
aatgaggcaccagggaaaatctgcctggcttcccttcttgctggtgagtg
tgtctaccattgctgctcctgtcagaatccagctttctcaggtgttcaat
atgggctgaagatcggcagctctccaggagtcctccaggcctccagtgcc
agactgggactcctgagacatccagtcctgtggactgggaagatactggg
ctctcagcctctccagtacgatgctcccagtgttggattaatccgcctgt
gctgggtaagccagtagaataaattcccttcggaatacacatttgcacta
tcagttctgcactataggggaccctggcaaacacagcaggctaaagaagg
tccagaatgtgacgaacaaaacccagtgggtaattttgataggagctcaa
gagtagagtactaataaaaggtggacatagacatttcctgtggagatgag
gccttgggaattggagtagagccccccccccaccgccccacggatcatgt
catagggaggaacttttctttctttctttctttcttttcttttttttcaa
gatttactttatgtatatatgagtacactgtcactgtcacggtcttcaga
cacaccagaagagggcattagatccaattacagacgggtgtgagccacca
tgtggttgctgggaattgaactcatgaccttcagagagcagccagtgctc
ttaactgctgaaccatctctttagccccagggaggcactttttctgtggt
tagtacacgtgcagatgaaaagagactttaaaggtgacacactgctggaa
ggaagttttcatggatagtccaaaatccatgtttggtgctacaaaacttg
cttgcagctaagtttttagtattcagaatataaacatcagtgatggtaaa
ggcttaacaaaaaaattgactttgcctaataaaaacgagttgtctgtcct
tgtgtaactgttcttaatgtattatcttttgtcttgctgattgaaaatgt
cttatttaaataagaagtatggcctcaagggctggtagtaatggtcctct
gcaatttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114116181_114117330
seq2: B6Ng01-313K20.b_49_1194 (reverse)

seq1  CAGAGGATCCCTTCAGCAAGGACTGGACCCTGCCAGGAGCCCTTCCGATG  50
      ||||||||||||||||  | ||||| |  ||  |||||| ||||||||||
seq2  CAGAGGATCCCTTCAGGCAAGACTGAA--CTTGCAGGAG-CCTTCCGATG  47

seq1  GCTGTAACCCTTAAGTCGT-GCTCCAGTTCCTAGCCAGTGCAGGCTTGGC  99
       |||||  || |||||||| |||||||||||||| |||||||||||||||
seq2  ACTGTA--CCCTAAGTCGTGGCTCCAGTTCCTAG-CAGTGCAGGCTTGGC  94

seq1  ACTTAACGTGATGCAATGGACTGAC-AGACCCTCAGGAAAGTGGCTAGGC  148
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTTAACGTGATGCAATGGACTGACAAGACCCTCAGGAAAGTGGCTAGGC  144

seq1  TAGCCTAGGGCAAGGCTTCGGAGACTGATCTCCCAAATTATAGGTGTCTA  198
      |||||||||||||||||||||||||||||||||||| |  ||||||||||
seq2  TAGCCTAGGGCAAGGCTTCGGAGACTGATCTCCCAATTATTAGGTGTCTA  194

seq1  GAGCCAGGTGGCTGCTGCAGCTCATGGCTGCAGAAGGCGACCGACTGGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGTGGCTGCTGCAGCTCATGGCTGCAGAAGGCGACCGACTGGCC  244

seq1  AACTGAGATTACTATTGGGTAGAGAATTTAGTGGAGTTTCTCTATAGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGATTACTATTGGGTAGAGAATTTAGTGGAGTTTCTCTATAGTTC  294

seq1  TGATGGAAGAGGAGCTGGAAGCAGGCTGTAGAGCCCAGGAACTCAGAGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAGAGGAGCTGGAAGCAGGCTGTAGAGCCCAGGAACTCAGAGGT  344

seq1  TCCTGCATGAGGCACAGACTGTGGGGAAGGAGGCCAGTGGTGGGTGCTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATGAGGCACAGACTGTGGGGAAGGAGGCCAGTGGTGGGTGCTGG  394

seq1  GAGCACCTGAAAGCATGGTGATCGAAGAAGCATATTTTAGGATTGTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCTGAAAGCATGGTGATCGAAGAAGCATATTTTAGGATTGTGTGT  444

seq1  TTCATCCCTCATGTGACCACAAACCCTTCTAGAACCTTCATCATTGACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCCTCATGTGACCACAAACCCTTCTAGAACCTTCATCATTGACTT  494

seq1  AAGTCGTACCAACCCTGCTGTAACCTGAGGTGAACATAGCCTCCCTGGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGTACCAACCCTGCTGTAACCTGAGGTGAACATAGCCTCCCTGGGC  544

seq1  TTGAGGGCTCAGCTGTAGGAAAACTAGTGGACTGAGCTCCCAGCTGTCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCTCAGCTGTAGGAAAACTAGTGGACTGAGCTCCCAGCTGTCCC  594

seq1  CTCCTTCACACAAGCCGACCATCGTGTGACCCATCTGCGTGCAGACTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCACACAAGCCGACCATCGTGTGACCCATCTGCGTGCAGACTCAG  644

seq1  GGTTAGCACTGGATGGATCAGTACCCCTCAGAGAGATCCTTTAACAGGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCACTGGATGGATCAGTACCCCTCAGAGAGATCCTTTAACAGGAA  694

seq1  TTATGGGTGACATCGTGGTTATAGTAGGGCACAGAGGAGGGAGAGGCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGTGACATCGTGGTTATAGTAGGGCACAGAGGAGGGAGAGGCAGG  744

seq1  AAGTGCACATGGGGTGTGGCCTCTGGGTTGAGTTAAAAGGCAGAGAGTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACATGGGGTGTGGCCTCTGGGTTGAGTTAAAAGGCAGAGAGTAG  794

seq1  AGAGCGACAAGGGTGGACCAGGAAAAAATGTATGGAATCCTCAGGTGGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGACAAGGGTGGACCAGGAAAAAATGTATGGAATCCTCAGGTGGAG  844

seq1  AAATGGGGTACAGGGTGGGGACTGGGCTTTAGCATCATCAGGAGGCAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGTACAGGGTGGGGACTGGGCTTTAGCATCATCAGGAGGCAGCT  894

seq1  GGGAGCCATGAGAGGTATTTGAACAGAGGAGCAACACTCAAGCGCCCCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCATGAGAGGTATTTGAACAGAGGAGCAACACTCAAGCGCCCCTT  944

seq1  GTAGCCTGACCCTCCCTCTGGTCTTCAGGAGGGACCTTTGTGTAAGGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGACCCTCCCTCTGGTCTTCAGGAGGGACCTTTGTGTAAGGAAT  994

seq1  TATCCCTGCATGTTGGACATTTCCAGATTCCTACAGTGGTCTCCCACAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGCATGTTGGACATTTCCAGATTCCTACAGTGGTCTCCCACAAG  1044

seq1  GCTCACTGTCCATGTCACACCAAGCCACTGAAGCCAGTCTCTAGGATAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGTCCATGTCACACCAAGCCACTGAAGCCAGTCTCTAGGATAAG  1094

seq1  GGTTATTTGGTTCCAAGGAAGCCCAGACTGGCTTCAAACTCACTATGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTGGTTCCAAGGAAGCCCAGACTGGCTTCAAACTCACTATGAAT  1144

seq1  TC  1150
      ||
seq2  TC  1146