BAC Information

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BAC

Clone NameB6Ng01-313L16
Chromosome12 (Build37)
Map Location 114,116,179 - 114,117,330
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132
Downstream geneJag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313L16.bB6Ng01-313L16.g
ACCGA104859GA104860
length1,1501,227
definitionB6Ng01-313L16.b B6Ng01-313L16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagtgagtttgaagccagtctgggcttccttggaaccaaataa
cccttatcctagagactggcttcagtggcttggtgtgacatggacagtga
gccttgtgggagaccactgtaggaatctggaaatgtccaacatgcaggga
taattccttacacaaaggtccctcctgaagaccagagggagggtcaggct
acaaggggcgcttgagtgttgctcctctgttcaaatacctctcatggctc
ccagctgcctcctgatgatgctaaagcccagtccccaccctgtaccccat
ttctccacctgaggattccatacattttttcctggtccacccttgtcgct
ctctactctctgccttttaactcaacccagaggccacaccccatgtgcac
ttcctgcctctccctcctctgtgccctactataaccacgatgtcacccat
aattcctgttaaaggatctctctgaggggtactgatccatccagtgctaa
ccctgagtctgcacgcagatgggtcacacgatggtcggcttgtgtgaagg
aggggacagctgggagctcagtccactagttttcctacagctgagccctc
aagcccagggaggctatgttcacctcaggttacagcagggttggtacgac
ttaagtcaatgatgaaggttctagaagggtttgtggtcacatgagggatg
aaacacacaatcctaaaatatgcttcttcgatcaccatgctttcaggtgc
tcccagcacccaccactggcctccttccccacagtctgtgcctcatgcag
gaacctctgagttcctgggctctacagcctgcttccagctcctcttccat
cagaactatagagaaactccactaaattctctacccaatagtaatctcag
ttggccagtcggtcgccttctgcagccatgagctgcagcagccacctggc
tctagacacctatatttgggagatcagtctccgaagccttgccctagcta
gcctagccactttcctgagggtctgtcagtccattgcatcacgttaaagt
gccaagcctgcactgctagaactggagcacgactttaagggttacagcat
cggaagggctcttggcagggttcagttcttgccttgacggatcctctgcc

gaattcagtctgtccgtgagggtgtttcctggaaggactgagggaggcag
gatgacccttccatagagcagctggcaccttctgacagcagcccagatgt
aatgaggcaccagggaaaatctgcctggcttcccttcttgctggtgagtg
tgtctaccattgctgctcctgtcagaatccagctttctcaggtgttcaat
atgggctgaagatcggcagctctccaggagtcctccaggcctccagtgcc
agactgggactcctgagacatccagtcctgtggactgggaagatactggg
ctctcagcctctccagtacgatgctcccagtgttggattaatccgcctgt
gctgggtaagccagtagaataaattcccttcggaatacacatttgcacta
tcagttctgcactataggggaccctggcaaacacagcaggctaaagaagg
tccagaatgtgacgaacaaaacccagtgggtaattttgataggagctcaa
gagtagagtactaataaaaggtggacatagacatttcctgtggagatgag
gccttgggaattggagtagagccccccccccaccgccccacggatcatgt
catagggaggaacttttctttctttctttctttcttttcttttttttcaa
gatttactttatgtatatatgagtacactgtcactgtcacggtcttcaga
cacaccagaagagggcattagatccaattacagacgggtgtgagccacca
tgtggttgctgggaattgaactcatgacccttcagaagagcagccagtgc
tctttaacttgctgacccatctctttagccccagggaggcactttttctt
gtgggttagtacacgtgcagatgaaaagagactttaaagggtgacacact
gctggaggaagtttcaaggatagtccagaattccaggttgtggctacaaa
actgcttgcagctcaagtttgaggaatccagatataacatcagtggagga
aatgcttagaaaaaaagtgactttgcagagaaagaaggtgtgctgtggcg
gtgtgatacgggctaaggatgagctatgctgtctctgacgggagaatgct
attcaaatgaagatggttcaggcctgcatgagattgctctctggaagtag
aagtaccatccgacaagcttgtggcatccccctcacacgtcgttaactcc
tcggcattgagggggaactccatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114116179_114117330
seq2: B6Ng01-313L16.b_50_1199 (reverse)

seq1  GGCAGAGGATCCCTTCA-GCAAGGACTGGACCCTGCCAGGAGCCCTTCCG  49
      |||||||||||| |  | ||||| |||| ||||||||| |||||||||||
seq2  GGCAGAGGATCCGTCAAGGCAAGAACTGAACCCTGCCAAGAGCCCTTCCG  50

seq1  ATGGCTGTAACCCTT-AAGTCGTGCTCCAGTTCCTAGCCAGTGCAGGCTT  98
      || |||||||||||| |||||||||||||||| |||| ||||||||||||
seq2  AT-GCTGTAACCCTTAAAGTCGTGCTCCAGTT-CTAG-CAGTGCAGGCTT  97

seq1  GGCAC-TTAACGTGATGCAATGGACTGACAGACCCTCAGGAAAGTGGCTA  147
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTAACGTGATGCAATGGACTGACAGACCCTCAGGAAAGTGGCTA  147

seq1  GGCTAGCCTAGGGCAAGGCTTCGGAGACTGATCTCCCAAATTATAGGTGT  197
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCTAG-CTAGGGCAAGGCTTCGGAGACTGATCTCCCAAA-TATAGGTGT  195

seq1  CTAGAGCCAGGTGGCTGCTGCAGCTCATGGCTGCAGAAGGCGACCGACTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCCAGGTGGCTGCTGCAGCTCATGGCTGCAGAAGGCGACCGACTG  245

seq1  GCCAACTGAGATTACTATTGGGTAGAGAATTTAGTGGAGTTTCTCTATAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTGAGATTACTATTGGGTAGAGAATTTAGTGGAGTTTCTCTATAG  295

seq1  TTCTGATGGAAGAGGAGCTGGAAGCAGGCTGTAGAGCCCAGGAACTCAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGGAAGAGGAGCTGGAAGCAGGCTGTAGAGCCCAGGAACTCAGA  345

seq1  GGTTCCTGCATGAGGCACAGACTGTGGGGAAGGAGGCCAGTGGTGGGTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGCATGAGGCACAGACTGTGGGGAAGGAGGCCAGTGGTGGGTGC  395

seq1  TGGGAGCACCTGAAAGCATGGTGATCGAAGAAGCATATTTTAGGATTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCACCTGAAAGCATGGTGATCGAAGAAGCATATTTTAGGATTGTG  445

seq1  TGTTTCATCCCTCATGTGACCACAAACCCTTCTAGAACCTTCATCATTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATCCCTCATGTGACCACAAACCCTTCTAGAACCTTCATCATTGA  495

seq1  CTTAAGTCGTACCAACCCTGCTGTAACCTGAGGTGAACATAGCCTCCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCGTACCAACCCTGCTGTAACCTGAGGTGAACATAGCCTCCCTG  545

seq1  GGCTTGAGGGCTCAGCTGTAGGAAAACTAGTGGACTGAGCTCCCAGCTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGGGCTCAGCTGTAGGAAAACTAGTGGACTGAGCTCCCAGCTGT  595

seq1  CCCCTCCTTCACACAAGCCGACCATCGTGTGACCCATCTGCGTGCAGACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTCACACAAGCCGACCATCGTGTGACCCATCTGCGTGCAGACT  645

seq1  CAGGGTTAGCACTGGATGGATCAGTACCCCTCAGAGAGATCCTTTAACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTAGCACTGGATGGATCAGTACCCCTCAGAGAGATCCTTTAACAG  695

seq1  GAATTATGGGTGACATCGTGGTTATAGTAGGGCACAGAGGAGGGAGAGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGGGTGACATCGTGGTTATAGTAGGGCACAGAGGAGGGAGAGGC  745

seq1  AGGAAGTGCACATGGGGTGTGGCCTCTGGGTTGAGTTAAAAGGCAGAGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGCACATGGGGTGTGGCCTCTGGGTTGAGTTAAAAGGCAGAGAG  795

seq1  TAGAGAGCGACAAGGGTGGACCAGGAAAAAATGTATGGAATCCTCAGGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCGACAAGGGTGGACCAGGAAAAAATGTATGGAATCCTCAGGTG  845

seq1  GAGAAATGGGGTACAGGGTGGGGACTGGGCTTTAGCATCATCAGGAGGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGGGTACAGGGTGGGGACTGGGCTTTAGCATCATCAGGAGGCA  895

seq1  GCTGGGAGCCATGAGAGGTATTTGAACAGAGGAGCAACACTCAAGCGCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGCCATGAGAGGTATTTGAACAGAGGAGCAACACTCAAGCGCCC  945

seq1  CTTGTAGCCTGACCCTCCCTCTGGTCTTCAGGAGGGACCTTTGTGTAAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGCCTGACCCTCCCTCTGGTCTTCAGGAGGGACCTTTGTGTAAGG  995

seq1  AATTATCCCTGCATGTTGGACATTTCCAGATTCCTACAGTGGTCTCCCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCCTGCATGTTGGACATTTCCAGATTCCTACAGTGGTCTCCCAC  1045

seq1  AAGGCTCACTGTCCATGTCACACCAAGCCACTGAAGCCAGTCTCTAGGAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACTGTCCATGTCACACCAAGCCACTGAAGCCAGTCTCTAGGAT  1095

seq1  AAGGGTTATTTGGTTCCAAGGAAGCCCAGACTGGCTTCAAACTCACTATG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTATTTGGTTCCAAGGAAGCCCAGACTGGCTTCAAACTCACTATG  1145

seq1  AATTC  1152
      |||||
seq2  AATTC  1150