BAC Information

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BAC

Clone NameB6Ng01-314G19
Chromosome12 (Build37)
Map Location 66,854,429 - 66,972,039
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314G19.bB6Ng01-314G19.g
ACCGA105366GA105367
length3351,112
definitionB6Ng01-314G19.b B6Ng01-314G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,854,429 - 66,854,770)(66,970,940 - 66,972,039)
sequence
acttcattaaaaaaattgcaaaattagaaaccataggatataagaaatgg
atccataaagaaaggaactggggggaattggagcaggcgaaatcataatc
aaaatatattctatggtttcttttaaaatataaaaatctaacaaaaataa
aagtcttatctaattaatactttcaaacctgggtgggagggggaggcaga
ggggaaaaggggaacatgataaggtttgggggtggggagacaggagagaa
gccctgagggccagcagaatggtgggaagtagggagatcctcttaaagaa
ccagttacctgggaggtgagtgactctcatgactc

gaattcactaaggataatgaaaatgcaatggaagccatttgtatcaagct
gtctgaattataagaattaataacactaaaggaaacaccagaacaaaaag
actgaccagaagagaaagtttgggcattggtaaaggagcaagtattcagg
ttatagaggttctaaattgaactgataaaaaaggtagaaagctcttaggg
gggataataagagaaaactcagacctagacagagatgcaaatatccaagt
gtaggaaagctgaggttctgttcagattctattcatcttatcgacacact
aatcacatcagactccaaaaggaggttggttgatgtagaaatattcaatt
ctataagagaaaaagaaataatacacaaggctgaacaattcacctgatat
cagacttctacacagaaaccttagagactcaaatttgtaaaatgggggtt
ttaccctatcaaaagacaaacaaccaagtgaaaaaacaaacaaacaaaca
aacaaacaaacaaacacctcagttttgtccagagcattttatccaacaaa
tgcatcatttataaatgaaggcaggaaaagataaaaataatcatattctt
aagatataatttattctttataaaagaaaatttgccatctgaaagaaact
gtactaatgattttgaagaaaacattgaagttcttaaactcacaataaga
gtaattataaagattaattcacagtgtaataacgctataaatatggcata
aaagtcactgataatttattatagaaagtgaaagacaaaacagctaaaaa
taaaactatattgaactaataaattgaacttatttcaattccttagtatg
ctaaggaatagatatggaatatcaggaaatacaaatcaaattttcattgg
gtcccgtttactcagccagggaggtgatcattaagagacaaaaacaaggg
ctagaagatggctcagatgttaaaagcccttgattgctcttgctgaggac
ctgagtttccatcccccacacccacacaggcagctcctcactgtttgtaa
ctcaatttgggaatcagaatggcccacatgggcatcagtaaacacacact
ttggcatccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66854429_66854770
seq2: B6Ng01-314G19.b_45_385

seq1  GAATTCACTTCATTAAAAAAATTGCAAAATTAGAAACCATAGGATATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCATTAAAAAAATTGCAAAATTAGAAACCATAGGATATAAG  50

seq1  AAATGGATCCATAAAGAAAGGAACTGGGGGGAATTGGAGCAGGCGAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATCCATAAAGAAAGGAACTGGGGGGAATTGGAGCAGGCGAAATC  100

seq1  ATAATCAAAATATATTCTATGGTTTCTTTTAAAATATAAAAATCTAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAAATATATTCTATGGTTTCTTTTAAAATATAAAAATCTAACAA  150

seq1  AAATAAAAGTCTTATCTAATTAATACTTTCAAACCTGGGTGGGAGGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGTCTTATCTAATTAATACTTTCAAACCTGGGTGGGAGGGGGA  200

seq1  GGCAGAGGGGAAAAGGGGAACATGATAAGGTTTGGGGGTGGGGAGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGGGAAAAGGGGAACATGATAAGGTTTGGGGGTGGGGAGACAGG  250

seq1  AGAGAAGCCCTGAGGGCCAGCAGAATGGTGGGAAGTAGGGAGATCCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAGAAGCCCTGAGGGCCAGCAGAATGGTGGGAAGTAGGGAGATCCTCT-  299

seq1  GAAAGTACCAGTTACCTGGGAGGTGAGAGACTCTCAGGACTC  342
       |||| ||||||||||||||||||||| |||||||| |||||
seq2  TAAAGAACCAGTTACCTGGGAGGTGAGTGACTCTCATGACTC  341


seq1: chr12_66970940_66972039
seq2: B6Ng01-314G19.g_67_1178 (reverse)

seq1  AGTGGATGCAA----GTGTGTTTACTGATGCCCATGTGGGC--ATCTGAT  44
      ||||||||| |    ||||||||||||||||||||||||||   ||||||
seq2  AGTGGATGCCAAAGTGTGTGTTTACTGATGCCCATGTGGGCCATTCTGAT  50

seq1  --CCAAATGGAGTTACAAACAGTGA-GAGCTGCCTGTTGTGGGTGTGGGG  91
        |||||| |||||||||||||||| |||||||||| |||||||||||||
seq2  TCCCAAATTGAGTTACAAACAGTGAGGAGCTGCCTG-TGTGGGTGTGGGG  99

seq1  GATGG-AACTCAGGTCCTCAGCAAGAGCAATCAA-GGCTTTTAACATCTG  139
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  GATGGAAACTCAGGTCCTCAGCAAGAGCAATCAAGGGCTTTTAACATCTG  149

seq1  AGCCATCTTCTAGCCCCTTGTTTTTGTCTCTTAATGATCACCTCCCTGGC  189
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTTCTAG-CCCTTGTTTTTGTCTCTTAATGATCACCTCCCTGGC  198

seq1  TGAGTAAACGGGACCCAATGAAAATTTGATTTGTATTTCCCTGATATTCC  239
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAGTAAACGGGACCCAATGAAAATTTGATTTGTATTT-CCTGATATTCC  247

seq1  ATATCTATTCCTTAGCATACTAAGGAATTGAAATAAGTTCAATTTATTAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATTCCTTAGCATACTAAGGAATTGAAATAAGTTCAATTTATTAG  297

seq1  TTCAATATAGTTTTATTTTTAGCTGTTTTGTCTTTCACTTTCTATAATAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATAGTTTTATTTTTAGCTGTTTTGTCTTTCACTTTCTATAATAA  347

seq1  ATTATCAGTGACTTTTATGCCATATTTATAGCGTTATTACACTGTGAATT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGTGACTTTTATGCCATATTTATAGCGTTATTACACTGTGAATT  397

seq1  AATCTTTATAATTACTCTTATTGTGAGTTTAAGAACTTCAATGTTTTCTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTATAATTACTCTTATTGTGAGTTTAAGAACTTCAATGTTTTCTT  447

seq1  CAAAATCATTAGTACAGTTTCTTTCAGATGGCAAATTTTCTTTTATAAAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCATTAGTACAGTTTCTTTCAGATGGCAAATTTTCTTTTATAAAG  497

seq1  AATAAATTATATCTTAAGAATATGATTATTTTTATCTTTTCCTGCCTTCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTATATCTTAAGAATATGATTATTTTTATCTTTTCCTGCCTTCA  547

seq1  TTTATAAATGATGCATTTGTTGGATAAAATGCTCTGGACAAAACTGAGG-  588
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTATAAATGATGCATTTGTTGGATAAAATGCTCTGGACAAAACTGAGGT  597

seq1  ---TGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTCACTTGGTTGTTTGT  635
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTCACTTGGTTGTTTGT  647

seq1  CTTTTGATAGGGTAAAACCCCCATTTTACAAATTTGAGTCTCTAAGGTTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATAGGGTAAAACCCCCATTTTACAAATTTGAGTCTCTAAGGTTT  697

seq1  CTGTGTAGAAGTCTGATATCAGGTGAATTGTTCAGCCTTGTGTATTATTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGAAGTCTGATATCAGGTGAATTGTTCAGCCTTGTGTATTATTT  747

seq1  CTTTTTCTCTTATAGAATTGAATATTTCTACATCAACCAACCTCCTTTTG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCTTATAGAATTGAATATTTCTACATCAACCAACCTCCTTTTG  797

seq1  GAGTCTGATGTGATTAGTGTGTCGATAAGATGAATAGAATCTGAACAGAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGATGTGATTAGTGTGTCGATAAGATGAATAGAATCTGAACAGAA  847

seq1  CCTCAGCTTTCCTACACTTGGATATTTGCATCTCTGTCTAGGTCTGAGTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTTCCTACACTTGGATATTTGCATCTCTGTCTAGGTCTGAGTT  897

seq1  TTCTCTTATTATCCCCCCTAAGAGCTTTCTACCTTTTTTATCAGTTCAAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTATTATCCCCCCTAAGAGCTTTCTACCTTTTTTATCAGTTCAAT  947

seq1  TTAGAACCTCTATAACCTGAATACTTGCTCCTTTACCAATGCCCAAACTT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCTCTATAACCTGAATACTTGCTCCTTTACCAATGCCCAAACTT  997

seq1  TCTCTTCTGGTCAGTCTTTTTGTTCTGGTGTTTCCTTTAGTGTTATTAAT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGGTCAGTCTTTTTGTTCTGGTGTTTCCTTTAGTGTTATTAAT  1047

seq1  TCTTATAATTCAGACAGCTTGATACAAATGGCTTCCATTGCATTTTCATT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAATTCAGACAGCTTGATACAAATGGCTTCCATTGCATTTTCATT  1097

seq1  ATCCTTAGTGAATTC  1100
      |||||||||||||||
seq2  ATCCTTAGTGAATTC  1112


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