BAC Information

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BAC

Clone NameB6Ng01-314O09
Chromosome12 (Build37)
Map Location 87,097,336 - 87,236,552
singlet/doubletdoublet
Overlap geneBC011209, 0610007P14Rik, Ttll5
Upstream geneNpc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314O09.bB6Ng01-314O09.g
ACCGA105689GA105690
length1821,140
definitionB6Ng01-314O09.b B6Ng01-314O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,097,336 - 87,097,517)(87,235,413 - 87,236,552)
sequence
cagttctgccttcttttgctctgaaggcccttgggcccggccctccccaa
acatggccatgtggctgtgtagaaagacagatgtcctgtgcaggcatcct
tgtccagggagggccttaagacacttaaccgatgttttgtaatttacacc
ataaaagttactctatgtttagctagctcccc
gaattcataatccaacagccacagaaacatctacatgctcagaaatgtct
actctctcctccctctcttgacatctccttagttctgatatgaaatatgg
gagacactgaggccttcatttctagaaaaagtggcaaagagaaaaaaatc
agagaatccaacattcaaactgggctaaataaagccaagaaggcttcaca
ttatgtaggcaagtttaaatacataactagagaggaactttgctaatctg
cactacaaaaaacaaacacatacacacattttaaaaaaatcccaagtaat
acaagcaatgcaactacacataaaggaattgaaaatgatccagagaacta
agattggaattacacatatagacattgagccaaaccagaaggccatggga
tgtctccctgctctcatcaccagaattagttcaagggctattcagaatgt
aggctctttggttggctggctggctggttggtttggggttttggtacaaa
cagcaaataacagacaattactaaatatgaaatgtcacattctgcagagc
tttggattctaccatcataacactaaaatactaacccatatgaagcagtt
atcaagcatgacactagataccctgagggctttgctcgccatataaatcg
ctttactggaagcaggagttcaggaagttaccactcgggcttccagtgtt
ccactaactacaccagagaagacaactgttaggataaatgcattccagtt
ctaacccatcacagcaaaatggtgccagagctgcaaactgagcaacacac
aagaaaactgcagtcaatttaaaaaactgcttacagagacagtaaatgag
caaaggatgactgtgtgaaaaacatttgtttttattttaaaagtcatatc
taattacagtaggttcctgaatttcagtcacaaacagaccaaatatcacc
catgaaaaagcacaaacagcccaacactccgtgtgagagagcgctaatgc
tcagctgatgggaacagtatgtctctaaggaaaccgggaaccaggacaaa
actcttgtgaactgtagtattttctttcagaatatttttgtggtaaagga
tgagagctctgttccatcattccaatcccaactgtccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87097336_87097517
seq2: B6Ng01-314O09.b_53_234

seq1  CAGTTCTGCCTTCTTTTGCTCTGAAGGCCAAGGGGCCCAGCCCTCCCCAA  50
      |||||||||||||||||||||||||||||   |||||| |||||||||||
seq2  CAGTTCTGCCTTCTTTTGCTCTGAAGGCCCTTGGGCCCGGCCCTCCCCAA  50

seq1  ACATGGCCATGTGGCTGTGTAGAAAGACAGATGTCCTGTGCAGGCATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCATGTGGCTGTGTAGAAAGACAGATGTCCTGTGCAGGCATCCT  100

seq1  TGTCCAGGGAGGGCCCAGAGACACATAAGCAATGTTTTGTAGTTTTCACC  150
      |||||||||||||||   |||||| ||| | |||||||||| ||| ||||
seq2  TGTCCAGGGAGGGCCTTAAGACACTTAACCGATGTTTTGTAATTTACACC  150

seq1  ATAAAAGTTTCTCTATGTTTAGCTGGCTCCCC  182
      ||||||||| |||||||||||||| |||||||
seq2  ATAAAAGTTACTCTATGTTTAGCTAGCTCCCC  182

seq1: chr12_87235413_87236552
seq2: B6Ng01-314O09.g_67_1206 (reverse)

seq1  AAAGG-CAGTT-GGATTGAAATGATGG-ACAGAGCTTCTCCATCCTTTTA  47
      ||||| ||||| |||||| |||||||| ||||||| ||| ||||||||  
seq2  AAAGGACAGTTGGGATTGGAATGATGGAACAGAGC-TCT-CATCCTTTAC  48

seq1  CAC-AAAATATTCTGAAAAGAAATTACTACAGTTCACAAGGAGTTTTTGT  96
      ||| ||||||||||| ||||||| ||||||||||||||| |||||||   
seq2  CACAAAAATATTCTG-AAAGAAAATACTACAGTTCACAA-GAGTTTTGTC  96

seq1  CTGGTT-CCGGTTTCCTAGGAGACATACTGTTCCCATCAGCTGAGCATTA  145
      |||||| ||||||||||  |||||||||||||||||||||||||||||||
seq2  CTGGTTCCCGGTTTCCTTAGAGACATACTGTTCCCATCAGCTGAGCATTA  146

seq1  GCGCTCTCCTCACACGGAGTGTTGGGCTTGTTTGTGCTTTTTCATGGGTG  195
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  GCGCTCT-CTCACACGGAGTGTTGGGC-TGTTTGTGCTTTTTCATGGGTG  194

seq1  ATATTTGGTCTGTTTGTGACTG-AATTCAGGAACCTACTGTAATTAGATA  244
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATTTGGTCTGTTTGTGACTGAAATTCAGGAACCTACTGTAATTAGATA  244

seq1  TGACTTTTAAAATAAAAACAAATGTTTTTCACACAGTCATCCTTTGCTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTAAAATAAAAACAAATGTTTTTCACACAGTCATCCTTTGCTCA  294

seq1  TTTACTGTCTCTGTAAGCAGTTTTTTAAATTGACTGCAGTTTTCTTGTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTCTCTGTAAGCAGTTTTTTAAATTGACTGCAGTTTTCTTGTGT  344

seq1  GTTGCTCAGTTTGCAGCTCTGGCACCATTTTGCTGTGATGGGTTAGAACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCAGTTTGCAGCTCTGGCACCATTTTGCTGTGATGGGTTAGAACT  394

seq1  GGAATGCATTTATCCTAACAGTTGTCTTCTCTGGTGTAGTTAGTGGAACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCATTTATCCTAACAGTTGTCTTCTCTGGTGTAGTTAGTGGAACA  444

seq1  CTGGAAGCCCGAGTGGTAACTTCCTGAACTCCTGCTTCCAGTAAAGCGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCCCGAGTGGTAACTTCCTGAACTCCTGCTTCCAGTAAAGCGAT  494

seq1  TTATATGGCGAGCAAAGCCCTCAGGGTATCTAGTGTCATGCTTGATAACT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGCGAGCAAAGCCCTCAGGGTATCTAGTGTCATGCTTGATAACT  544

seq1  GCTTCATATGGGTTAGTATTTTAGTGTTATGATGGTAGAATCCAAAGCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATATGGGTTAGTATTTTAGTGTTATGATGGTAGAATCCAAAGCTC  594

seq1  TGCAGAATGTGACATTTCATATTTAGTAATTGTCTGTTATTTGCTGTTTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATGTGACATTTCATATTTAGTAATTGTCTGTTATTTGCTGTTTG  644

seq1  TACCAAAACCCCAAACCAACCAGCCAGCCAGCCAACCAAAGAGCCTACAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAACCCCAAACCAACCAGCCAGCCAGCCAACCAAAGAGCCTACAT  694

seq1  TCTGAATAGCCCTTGAACTAATTCTGGTGATGAGAGCAGGGAGACATCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAGCCCTTGAACTAATTCTGGTGATGAGAGCAGGGAGACATCCC  744

seq1  ATGGCCTTCTGGTTTGGCTCAATGTCTATATGTGTAATTCCAATCTTAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTCTGGTTTGGCTCAATGTCTATATGTGTAATTCCAATCTTAGT  794

seq1  TCTCTGGATCATTTTCAATTCCTTTATGTGTAGTTGCATTGCTTGTATTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGATCATTTTCAATTCCTTTATGTGTAGTTGCATTGCTTGTATTA  844

seq1  CTTGGGATTTTTTTAAAATGTGTGTATGTGTTTGTTTTTTGTAGTGCAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATTTTTTTAAAATGTGTGTATGTGTTTGTTTTTTGTAGTGCAGA  894

seq1  TTAGCAAAGTTCCTCTCTAGTTATGTATTTAAACTTGCCTACATAATGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAGTTCCTCTCTAGTTATGTATTTAAACTTGCCTACATAATGTG  944

seq1  AAGCCTTCTTGGCTTTATTTAGCCCAGTTTGAATGTTGGATTCTCTGATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCTTGGCTTTATTTAGCCCAGTTTGAATGTTGGATTCTCTGATT  994

seq1  TTTTTCTCTTTGCCACTTTTTCTAGAAATGAAGGCCTCAGTGTCTCCCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTTTGCCACTTTTTCTAGAAATGAAGGCCTCAGTGTCTCCCAT  1044

seq1  ATTTCATATCAGAACTAAGGAGATGTCAAGAGAGGGAGGAGAGAGTAGAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATATCAGAACTAAGGAGATGTCAAGAGAGGGAGGAGAGAGTAGAC  1094

seq1  ATTTCTGAGCATGTAGATGTTTCTGTGGCTGTTGGATTATGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGCATGTAGATGTTTCTGTGGCTGTTGGATTATGAATTC  1140