BAC Information

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BAC

Clone NameB6Ng01-315C02
Chromosome12 (Build37)12 (Build37)
Map Location 96,637,690 - 96,637,94861,628,998 - 61,630,021
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603
Downstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315C02.bB6Ng01-315C02.g
ACCGA105860GA105861
length7441,016
definitionB6Ng01-315C02.b B6Ng01-315C02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,637,690 - 96,637,948)(61,628,998 - 61,630,021)
sequence
gaattcattatttttaatagctgagtagtactcaattgtataaatgtacc
atattttctgtatccattcctctgttgatggacatctgggttatttccag
ctttgggctattattaaggctgctatgaatgtagtggagcaggttccctt
gttatgtgttggagcatttttgggtatatgcccaggagtggtatagctgg
gttctcaagtaatactatgtctaattttctaaggaactgcaagactgatc
tccagagtggttgtaccagcttgcaatcccaccaacaatggaggagtgtt
cctctttctccacatctttgccagcatctgctgtcacccacggctttgat
gctagccattctgactgtggattcatttctggttcttcaattatactcct
ttgatcttcctgcctatctctgtaccattactgtacagtttttatcacta
ttgctctgtaatatagcttgagataagggatggtgatttcccccagacgt
tctgttattgttgagaatagttttcacaatccagagatttttgtttttcg
aaatgaatttgcaaattgctctttctaactcaatgaagaattgaattggt
attttgatgatggttgtattgaatttgtagatggctttcagcaagatggc
catttttactatataaatcctgccaatctatgagcatgagagatctttat
tcaagtactcaggacatagaggcatatatttctgaatttagaga
gaattctcctattttcaagcagaaagggggtatgagatgtcctaaaataa
gaacaaagcaaacgcaataactcctttggttagataatgtttaaggtgtt
ccttcttttttaccaaatagagtattatgagacagtgcacaatgggcaga
acctttatcaggctctgagagtcctttgaacatatactttgtatggacta
ctaccaacatctaaaacttctccagcatccttattttttccttaagcagg
agaattgtagagtagaaaacatgcagcgtagaaaacttacgcaggatgta
gatctttcataaatccttaccatcactttaagacctaagtaggggaggat
cccttctgtcagtgattcttcctgtaaaatgtgtatcgaatcgtgagtag
aagaattaatgatttgggttgtggaacaagggaactgttgtgagtacaat
gctatttctcagcagaataatagcatgtcatggatctcaggttagccctt
tgtgtggtcataaaggtgtgaataaagagtcttctggttttgatatgtga
acaaaataaaagtatccagttcaaaaaattgaatcttaaaaaatgtattt
aagcagctgcctgggtagtaatatttcttttacaaagcagacatatattt
ttttcaaaaaaaaaaaaacctttaatatgtttatattgtgtcctggtata
ttatttaactaataaaatttcactaccatgtgtaagacagttcttaagta
ctatagcatagaaacatttctgtttgctgggttaaacgcttgtggtatat
agcaaagccgtgggtacttagtcacttttgatcattgttttaaaaggcaa
agactggttttatttagttgcacatgcatgtattcttaccaactttaagc
tgcaattttgatggtttgggagtgaactgaaatgatgaaaatgtagtgcc
ttattttttttattaactactacttagttagaataatgactgatgctttt
accatacgagaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96637690_96637948
seq2: B6Ng01-315C02.b_52_568 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AAACTATTCTCAACAATAACAGAACGTCTGGGGGAAATCACCATCCCTTA  50

seq1  --------------------------------------------------  0
                                                        
seq2  TCTCAAGCTATATTACAGAGCAATAGTGATAAAAACTGTACAGTAATGGT  100

seq1  --------------------------------------------------  0
                                                        
seq2  ACAGAGATAGGCAGGAAGATCAAAGGAGTATAATTGAAGAACCAGAAATG  150

seq1  --------------------------------------------------  0
                                                        
seq2  AATCCACAGTCAGAATGGCTAGCATCAAAGCCGTGGGTGACAGCAGATGC  200

seq1  --------------------------------------------------  0
                                                        
seq2  TGGCAAAGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG  250

seq1  ----------AAACTATTCTCAACA--ATAAAAGAAACTCAGTGGAAAAT  38
                 ||| | |||  | |  |     | |  ||  | ||||||
seq2  CAAGCTGGTACAACCACTCTGGAGATCAGTCTTGCAGTTCCTTAGAAAAT  300

seq1  TGGACATAGTACTACCAGAAGATCCAGCAATTCCTCTCCTGGGTATATAC  88
      | ||||||||| |||  ||  | ||||| || || |||||||| ||||||
seq2  TAGACATAGTATTACTTGAGAACCCAGCTATACCACTCCTGGGCATATAC  350

seq1  CTAGAAGATGTTCCAATTTGTAATAAGGACACATGCTCCACTATGCTCAT  138
      | | || ||| |||||    ||| ||||  || ||||||||||   ||||
seq2  CCA-AAAATGCTCCAACACATAACAAGGGAACCTGCTCCACTACATTCAT  399

seq1  AGCAGCCTTATTTATAATAGCCAAAAACTGGAAAGAACCCAGATGTCCAT  188
      ||||||||||   ||||||||| ||| ||||||| |||||||||||||||
seq2  AGCAGCCTTA---ATAATAGCCCAAAGCTGGAAATAACCCAGATGTCCAT  446

seq1  CAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATAGAGTAC  238
      ||||||||||||||||||||||||| ||||||||||| ||||| ||||||
seq2  CAACAGAGGAATGGATACAGAAAATATGGTACATTTATACAATTGAGTAC  496

seq1  TACTCAGCAATTAAAAACAAT  259
      |||||||| |||||||| |||
seq2  TACTCAGCTATTAAAAATAAT  517

seq1: chr12_61628998_61630021
seq2: B6Ng01-315C02.g_66_1081

seq1  GAATTCTCCTATTTTCAAGCAGAAAGGGGGTATGAGATGTCCTAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATTTTCAAGCAGAAAGGGGGTATGAGATGTCCTAAAATAA  50

seq1  GAACAAAGCAAACGCAATAACTCCTTTGGTTAGATAATGTTTAAGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGCAAACGCAATAACTCCTTTGGTTAGATAATGTTTAAGGTGTT  100

seq1  CCTTCTTTTTTACCAAATAGAGTATTATGAGACAGTGCACAATGGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTTTTACCAAATAGAGTATTATGAGACAGTGCACAATGGGCAGA  150

seq1  ACCTTTATCAGGCTCTGAGAGTCCTTTGAACATATACTTTGTATGGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATCAGGCTCTGAGAGTCCTTTGAACATATACTTTGTATGGACTA  200

seq1  CTACCAACATCTAAAACTTCTCCAGCATCCTTATTTTTTCCTTAAGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACATCTAAAACTTCTCCAGCATCCTTATTTTTTCCTTAAGCAGG  250

seq1  AGAATTGTAGAGTAGAAAACATGCAGCGTAGAAAACTTACGCAGGATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTAGAGTAGAAAACATGCAGCGTAGAAAACTTACGCAGGATGTA  300

seq1  GATCTTTCATAAATCCTTACCATCACTTTAAGACCTAAGTAGGGGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCATAAATCCTTACCATCACTTTAAGACCTAAGTAGGGGAGGAT  350

seq1  CCCTTCTGTCAGTGATTCTTCCTGTAAAATGTGTATCGAATCGTGAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGTCAGTGATTCTTCCTGTAAAATGTGTATCGAATCGTGAGTAG  400

seq1  AAGAATTAATGATTTGGGTTGTGGAACAAGGGAACTGTTGTGAGTACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAATGATTTGGGTTGTGGAACAAGGGAACTGTTGTGAGTACAAT  450

seq1  GCTATTTCTCAGCAGAATAATAGCATGTCATGGATCTCAGGTTAGCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCTCAGCAGAATAATAGCATGTCATGGATCTCAGGTTAGCCCTT  500

seq1  TGTGTGGTCATAAAGGTGTGAATAAAGAGTCTTCTGGTTTTGATATGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTCATAAAGGTGTGAATAAAGAGTCTTCTGGTTTTGATATGTGA  550

seq1  ACAAAATAAAAGTATCCAGTTCAAAAAATTGAATCTTAAAAAATGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAAAGTATCCAGTTCAAAAAATTGAATCTTAAAAAATGTATTT  600

seq1  AAGCAGCTGCCTGGGTAGTAATATTTCTTTTACAAAGCAGACATATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTGCCTGGGTAGTAATATTTCTTTTACAAAGCAGACATATATTT  650

seq1  TTTTC-AAAAAAAAAAAACCTTTAATATGTTTATATTGTGTCCTGGTATA  699
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAAAAAAAAAAACCTTTAATATGTTTATATTGTGTCCTGGTATA  700

seq1  TTATTTAACTAATAAAATTTCACTACCATGTGTAAGACAGTTCTTAAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAACTAATAAAATTTCACTACCATGTGTAAGACAGTTCTTAAGTA  750

seq1  CTATAGCATAGAAACATTTCTGTTTGCTGGGTTAAACGCTTGTGGTATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCATAGAAACATTTCTGTTTGCTGGGTTAAACGCTTGTGGTATAT  800

seq1  AGCAAAGCCGTGGGTACTTAGTCACTTTTGATCATTGTTTTAAAAGGCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCCGTGGGTACTTAGTCACTTTTGATCATTGTTTTAAAAGGCAA  850

seq1  AGACTGGTTTTATTTAGTTGCACATGCATGTATTCTTACCAACTTTAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTTTTATTTAGTTGCACATGCATGTATTCTTACCAACTTTAAGC  900

seq1  TGCAATTTTGATGGTTT-GGAGTGAACTGAAATGATGAAAAATTGTAAGT  948
      ||||||||||||||||| |||||||||||||||||||||||  ||| |||
seq2  TGCAATTTTGATGGTTTGGGAGTGAACTGAAATGATGAAAA--TGT-AGT  947

seq1  G-CTTATTTTTTTTAATTAAACTACTTACTTAGTTTAGAAATAATGAACT  997
      | |||||||||||||  | |||||| ||||||| |||| ||||||||   
seq2  GCCTTATTTTTTTTA--TTAACTAC-TACTTAG-TTAG-AATAATGA--C  990

seq1  TGATGCTTTTACCCATAAGAGAAAAAA  1024
      ||||||||||| ||||| |||||||||
seq2  TGATGCTTTTA-CCATACGAGAAAAAA  1016