BAC Information

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BAC

Clone NameB6Ng01-315E06
Chromosome6 (Build37)12 (Build37)
Map Location 118,407,388 - 118,408,481105,382,276 - 105,382,864
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248
Downstream geneZfp9, Ankrd26, Cacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315E06.bB6Ng01-315E06.g
ACCGA105961GA105962
length1,137975
definitionB6Ng01-315E06.b B6Ng01-315E06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,407,388 - 118,408,481)(105,382,276 - 105,382,864)
sequence
gaattccaaataaatacaagtaggttttaacgtggcttctgaatttgact
tcttttatgtacaccaaaatcatttcagagccattcatgttattattcaa
tgttttaggtcagggcctgtcctctgacactttttatttcatgatatgat
ctaacaatagtatgttattctgagcctcagcattcaaacattggatattg
ggagctgttagatcttttaacatatccttgttacttttgaaaagcatttc
ctaactttctgatatcacaagatggtacagattcaacctggattttcatt
acatagccctagaaccagccatttctcaagaacttagagactttgatatc
ttagctttttaactgcactcagtgctctggggcataaggatatttaaatt
tctaaacagatagaggtacaaaatgggtgcttacatatccaacttagaaa
tatctgtgtagttacataaaatattgggaaatcataaaatatttgacagc
agtaaagtgtttctggatgttcgatgactaatagctctcccaaggctttt
ctggatacacttgcccatgatgtgtcaataaaacctcacacatacccttg
gtggttagctgcaggtgcatccaccatggtcagaacagtattgatgtttg
ggaagcaagaaagcattcctgtttgacttaactaagtagttggtgttggt
ttaaactgccttgttggctaaggctaactttgacaagccacaaatatttg
tattaatttcactttttgtggtttattcagagaggatccctctgctttct
tctgagagataaccttctgaaaccattgtgggaaattcccagataagggg
cccattccctttctagtcctctcagttgtaaactttctacccacatgggc
ctctggcagcaacaactttactcttcagaaaattgattagagtctggtcc
tcctggtagctcttcctgttagaactaagcaatgggttgctgaccaaatc
cttacccaatggtccttgttgctggttttggctaatggccagaaaccttc
ctagagttaccattggaaaggaagaactcttgctttatcgttggggcctt
ttataaaaagatcccaacattgcctgaaccccaagaa
gaattcattttaggaaagattcttgttatcaatatgcttttcctgttatt
attaaacacatataacaatcaataggtattagtccacccttttaagcaga
tctctgcagatctacgaagatgtactgtcttgtagtaaaactatatagac
aagtagatgacttcttaagtcttaatgatgatcctataagaattcctata
attatatctgtgattattaagctcttttatagtgggactgatactaggtc
cttttctgatagtcaaaactgaaatgagaactctgtcagtctcccatgtg
tcaccagttaattgcctcttagatggtaaccagactttctcctactcaga
gcacattccaagaggttgtaaaacaattaaccaaaagtcataaaaaagga
actaatgatttattataggtgctagaacagaagataaaatattgactggg
tttatctatacaaaactttgctagtaacttagttatggttttcaactttc
aatgagcctgtggagctgagacaggtgatggatgtttagccagataatta
ttcctgatggttatgcatgtaaacattctctgttgtaaacttctatttca
atttatgatttgaattttatgtgtgaccctgtgatgaacttttaacgtgt
gatcatgtattctgaaagatgtataagtacggaggacaaagagaagagat
ggagaaatttttcccttgccctgcttagcatctttccgctttcccctttt
tcttaggtagctttaataggaaactttttacaacttagtaataaacgctc
taaccagtttttaaagtgtccctttttcttcctggaacttcccactagtt
agagtcccgcagttcctgctgagatggtacaaaggctatgtacttaatcc
tttgctggtttaggaagagtgctaaatgcccgaggctgcggtcctgggcc
tctgaggatcacagaatgcagatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_118407388_118408481
seq2: B6Ng01-315E06.b_46_1182

seq1  GAATTCCAAATAAATACAAGTAGGTTTTAACGTGGCTTCTGAATTTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATAAATACAAGTAGGTTTTAACGTGGCTTCTGAATTTGACT  50

seq1  TCTTTTATGTACACCAAAATCATTTCAGAGCCATTCATGTTATTATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATGTACACCAAAATCATTTCAGAGCCATTCATGTTATTATTCAA  100

seq1  TGTTTTAGGTCAGGGCCTGTCCTCTGACACTTTTTATTTCATGATATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGGTCAGGGCCTGTCCTCTGACACTTTTTATTTCATGATATGAT  150

seq1  CTAACAATAGTATGTTATTCTGAGCCTCAGCATTCAAACATTGGATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATAGTATGTTATTCTGAGCCTCAGCATTCAAACATTGGATATTG  200

seq1  GGAGCTGTTAGATCTTTTAACATATCCTTGTTACTTTTGAAAAGCATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTTAGATCTTTTAACATATCCTTGTTACTTTTGAAAAGCATTTC  250

seq1  CTAACTTTCTGATATCACAAGATGGTACAGATTCAACCTGGATTTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTCTGATATCACAAGATGGTACAGATTCAACCTGGATTTTCATT  300

seq1  ACATAGCCCTAGAACCAGCCATTTCTCAAGAACTTAGAGACTTTGATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCCCTAGAACCAGCCATTTCTCAAGAACTTAGAGACTTTGATATC  350

seq1  TTAGCTTTTTAACTGCACTCAGTGCTCTGGGGCATAAGGATATTTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTTAACTGCACTCAGTGCTCTGGGGCATAAGGATATTTAAATT  400

seq1  TCTAAACAGATAGAGGTACAAAATGGGTGCTTACATATCCAACTTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAGATAGAGGTACAAAATGGGTGCTTACATATCCAACTTAGAAA  450

seq1  TATCTGTGTAGTTACATAAAATATTGGGAAATCATAAAATATTTGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGTAGTTACATAAAATATTGGGAAATCATAAAATATTTGACAGC  500

seq1  AGTAAAGTGTTTCTGGATGTTCGATGACTAATAGCTCTCCCAAGGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTGTTTCTGGATGTTCGATGACTAATAGCTCTCCCAAGGCTTTT  550

seq1  CTGGATACACTTGCCCATGATGTGTCAATAAAACCTCACACATACCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATACACTTGCCCATGATGTGTCAATAAAACCTCACACATACCCTTG  600

seq1  GTGGTTAGCTGCAGGTGCATCCACCATGGTCAGAACAGTATTGATGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGCTGCAGGTGCATCCACCATGGTCAGAACAGTATTGATGTTTG  650

seq1  GGAAGCAAGAAAGCATTCCTGTTTGACTTAACTAAGTAGTTGGTGTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAGAAAGCATTCCTGTTTGACTTAACTAAGTAGTTGGTGTTGGT  700

seq1  TTAAACTGCCTTGTTGGCTAAGGCTAACTTTGACAAGCCACAAATATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGCCTTGTTGGCTAAGGCTAACTTTGACAAGCCACAAATATTTG  750

seq1  TATT-ATTTCAC-TTTTGTGGTTTATTCAGAGAGGAT-CCTCTGCTTTCT  797
      |||| ||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TATTAATTTCACTTTTTGTGGTTTATTCAGAGAGGATCCCTCTGCTTTCT  800

seq1  TCTGAGAGATA--CCTCTG-AACCATTGT-GGAAATTCCCAGATAA-GGG  842
      |||||||||||  | |||| ||||||||| |||||||||||||||| |||
seq2  TCTGAGAGATAACCTTCTGAAACCATTGTGGGAAATTCCCAGATAAGGGG  850

seq1  CCCATTCCCTTTCTAGT-CTCTCAGTTGTAAAC-TTCTACCCACATTGGC  890
      ||||||||||||||||| ||||||||||||||| |||||||||||| |||
seq2  CCCATTCCCTTTCTAGTCCTCTCAGTTGTAAACTTTCTACCCACATGGGC  900

seq1  CTCTGGCAGCAACAAC-TTACTC-TCAGAAAATTGATTAGAGTCT-GTCC  937
      |||||||||||||||| |||||| ||||||||||||||||||||| ||||
seq2  CTCTGGCAGCAACAACTTTACTCTTCAGAAAATTGATTAGAGTCTGGTCC  950

seq1  T-CTGGTAGC---TTCTGTTAG-ACT-AGCA--TGGTTGCTGACCAAAT-  978
      | ||||||||   | ||||||| ||| ||||   ||||||||||||||| 
seq2  TCCTGGTAGCTCTTCCTGTTAGAACTAAGCAATGGGTTGCTGACCAAATC  1000

seq1  CTTA-CCAAT-GTCTTGTTTGTTTGTTT--GCT-ATGGCAAG--AGCTTC  1021
      |||| ||||| ||| |  ||| | ||||  ||| ||||| ||  | ||||
seq2  CTTACCCAATGGTCCTTGTTGCTGGTTTTGGCTAATGGCCAGAAACCTTC  1050

seq1  CTAGAG-TACCAT---GAAGGAAGAAC-CATGC-TTATAGGTGGG---CT  1062
      |||||| ||||||    |||||||||| | ||| |||| | ||||    |
seq2  CTAGAGTTACCATTGGAAAGGAAGAACTCTTGCTTTATCGTTGGGGCCTT  1100

seq1  TTAT-AAAAGAT--CTACATTGCCTGA--CCCAAGAA  1094
      |||| |||||||  | |||||||||||  ||||||||
seq2  TTATAAAAAGATCCCAACATTGCCTGAACCCCAAGAA  1137

seq1: chr12_105382276_105382864
seq2: B6Ng01-315E06.g_306_856

seq1  TGGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGTCAGTCTCC  50
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAGGTCCTTTTCTGATAGTCAAAACTGAAATGAGAACTCTGTCAGTCTCC  50

seq1  CAAGTGTCACCAGTTAATTG-CTCTTAGATGGTAACCAGACTTTCTCCTA  99
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATGTGTCACCAGTTAATTGCCTCTTAGATGGTAACCAGACTTTCTCCTA  100

seq1  CTCAGAGCACATTCCAAGAGGTTGTAAAACAATTAACCAAAGGACATAAA  149
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  CTCAGAGCACATTCCAAGAGGTTGTAAAACAATTAACCAAAAGTCATAAA  150

seq1  AAGGGAACTAATGTTTTATTATAGGTGCTAGGACAAAAGATAAAATATTA  199
      || |||||||||| ||||||||||||||||| ||| ||||||||||||| 
seq2  AAAGGAACTAATGATTTATTATAGGTGCTAGAACAGAAGATAAAATATTG  200

seq1  ACTGGGTTTATCTATGTAAAACTTCACGAATAACTTAGTTATGGTTTTCA  249
      |||||||||||||||  |||||||  | | ||||||||||||||||||||
seq2  ACTGGGTTTATCTATACAAAACTTTGCTAGTAACTTAGTTATGGTTTTCA  250

seq1  ATTTTTAGTGAACCTGTGGATCTAAGACAGGTGATGAATGCTTAGCCAGA  299
      | ||| | ||| |||||||| || |||||||||||| ||| |||||||||
seq2  ACTTTCAATGAGCCTGTGGAGCTGAGACAGGTGATGGATGTTTAGCCAGA  300

seq1  TAATTACTCCTAATTGATATGCATGTAAGCATTCCCTGTTCTAAACTTCT  349
      |||||| |||| || | ||||||||||| ||||| ||||| |||||||||
seq2  TAATTATTCCTGATGGTTATGCATGTAAACATTCTCTGTTGTAAACTTCT  350

seq1  ATTTCAATTTATGATTTGACATTT-TGTGTGAACTTGTGATGAACTCTTT  398
      |||||||||||||||||||  ||| ||||||| | ||||||||||| |||
seq2  ATTTCAATTTATGATTTGAATTTTATGTGTGACCCTGTGATGAACT-TTT  399

seq1  AACAAGTGATCATGTATTCTGAAAGATGTATAAGTACTGAGGACAAAGAG  448
      |||  |||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACGTGTGATCATGTATTCTGAAAGATGTATAAGTACGGAGGACAAAGAG  449

seq1  ATGAGAAAAGAGAGAAGAGAAATTTTTTCCATTTCCCTGCTTAGAGTAGA  498
      | ||||                                   | |||   |
seq2  AAGAGA-----------------------------------TGGAG--AA  462

seq1  ATTTTTCCCTTGCCCCCTGCTTAGGATCTTTCCACTTTCCCCCATTTCCT  548
      ||||||||||||  |||||||||| |||||||| |||| |||| ||| ||
seq2  ATTTTTCCCTTG--CCCTGCTTAGCATCTTTCCGCTTT-CCCCTTTTTCT  509

seq1  CAGATAGCTTTAATAGGAACCTTTTTA-AACTTAGTAATAAA  589
       || ||||||||||||||| ||||||| ||||||||||||||
seq2  TAGGTAGCTTTAATAGGAAACTTTTTACAACTTAGTAATAAA  551