BAC Information

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BAC

Clone NameB6Ng01-315L13
Chromosome12 (Build37)
Map Location 69,465,646 - 69,608,103
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040745, LOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315L13.bB6Ng01-315L13.g
ACCGA106293GA106294
length4471,099
definitionB6Ng01-315L13.b B6Ng01-315L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,607,651 - 69,608,103)(69,465,646 - 69,466,694)
sequence
ccaaagcttctgagtgagacttctctcttgcatgaagtcacccacatgag
gatacatctcactgggccctaagtgcctgagtggtgtcattcatcagaaa
atttgttctgggaagaatacggctctaaatgttgtacttcaagagagaag
tttaatagtttagggattaatagaacattggaacattcaagtttactagg
ttgtgatggcaacattttttaaaaaaaatatttggtgaaatttaaccttt
aacggaatgatgtgacaactttaaattatctaagatttctgaaacagact
tgcactaaaatacagattttcaacttaatctttaaaaaggttattgaggt
agattaaacagtgcttcaggaagcaagcacatttgacatcatccattttt
accttataataacataattgctgtggagttttgacatttaacaaggg

gaattcaggacatgaatttaaggcaatgacctggaagcaggaacctaagc
agaggccatgagggaatgttgctcagaggctagttcctcacagcttgctc
agcattctttcgtatatcatctgccaaaacctacccaggagtaacacagt
ccctagagaactggccccatgcatatcaattgttgataaggaaatttcac
tgcagacttacctgcaggcaaatttgatggaggccttttccagattgaga
atccctctttctaattgactatatcttgtgtcaagatgacataaaattag
ccagcacagtgggaaaattccttgctgaacaagtgtaagtctctgagttt
gacttccagacccaagaatgattatcttctgtaatctcagtgtttctatg
atgcgatggaaggtggagacaagagaattcccagaagttcatgggccaga
tagcctgaaaacaagatagcctgtctcaacctattcagaaggcaagcatt
agcactcaaggctggctgctgatctccagatctgcatacccatatataca
cactcaaaaatattcattttttgtaaacaaagcttaacttgtttcagcaa
gcttattaagcatatgtatagcattatttcctgtcatcttaaaatgcctg
caaaatattccacttcagcctttccaaaaagaaataacaataagctcata
aagattgagtttctgataaatatttctaaatactgtgttttctttatcaa
atttttcaggaagataccttaaagatatagtgtataaaactttgagatca
ccaaatctctccatggttcatttcccaacagagtctctggaaggagaaaa
ggcataaaattagcgagagcgcatcattcaattcagtgacccgccacaaa
acagagctataatttctgtagcatctccgctatggttgaggattaggccg
aggaccgggtctcagaggctaattaaagcacccgaagaagatgcagagac
attagatggatcgcagagcaccagcgttgcccagctttatgagatccttt
acagctgggcctctaaatgagactggcctttatgtcaaccataattaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_69607651_69608103
seq2: B6Ng01-315L13.b_47_499 (reverse)

seq1  CCCTTGTTAAATGTCAAAACTCCACAGCAATTATGTTATTATAAGGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTAAATGTCAAAACTCCACAGCAATTATGTTATTATAAGGTAAA  50

seq1  AATGGATGATGTCAAATGTGCTTGCTTCCTGAAGCACTGTTTAATCTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGATGTCAAATGTGCTTGCTTCCTGAAGCACTGTTTAATCTACC  100

seq1  TCAATAACCTTTTTAAAGATTAAGTTGAAAATCTGTATTTTAGTGCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACCTTTTTAAAGATTAAGTTGAAAATCTGTATTTTAGTGCAAGT  150

seq1  CTGTTTCAGAAATCTTAGATAATTTAAAGTTGTCACATCATTCCGTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCAGAAATCTTAGATAATTTAAAGTTGTCACATCATTCCGTTAAA  200

seq1  GGTTAAATTTCACCAAATATTTTTTTTAAAAAATGTTGCCATCACAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATTTCACCAAATATTTTTTTTAAAAAATGTTGCCATCACAACCT  250

seq1  AGTAAACTTGAATGTTCCAATGTTCTATTAATCCCTAAACTATTAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTTGAATGTTCCAATGTTCTATTAATCCCTAAACTATTAAACTT  300

seq1  CTCTCTTGAAGTACAACATTTAGAGCCGTATTCTTCCCAGAACAAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGAAGTACAACATTTAGAGCCGTATTCTTCCCAGAACAAATTTT  350

seq1  CTGATGAATGACACCACTCAGGCACTTAGGGCCCAGTGAGATGTATCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATGACACCACTCAGGCACTTAGGGCCCAGTGAGATGTATCCTC  400

seq1  ATGTGGGTGACTTCATGCAAGAGAGAAGTCTCACTCAGAAGCTTTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTGACTTCATGCAAGAGAGAAGTCTCACTCAGAAGCTTTGGGAA  450

seq1  TTC  453
      |||
seq2  TTC  453


seq1: chr12_69465646_69466694
seq2: B6Ng01-315L13.g_125_1167

seq1  CATGAGGGAATGTTGCTCAGAGGCTAGTTCCTCACAGCTTGCTCAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGGAATGTTGCTCAGAGGCTAGTTCCTCACAGCTTGCTCAGCATT  50

seq1  CTTTCGTATATCATCTGCCAAAACCTACCCAGGAGTAACACAGTCCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGTATATCATCTGCCAAAACCTACCCAGGAGTAACACAGTCCCTAG  100

seq1  AGAACTGGCCCCATGCATATCAATTGTTGATAAGGAAATTTCACTGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGCCCCATGCATATCAATTGTTGATAAGGAAATTTCACTGCAGA  150

seq1  CTTACCTGCAGGCAAATTTGATGGAGGCCTTTTCCAGATTGAGAATCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGCAGGCAAATTTGATGGAGGCCTTTTCCAGATTGAGAATCCCT  200

seq1  CTTTCTAATTGACTATATCTTGTGTCAAGATGACATAAAATTAGCCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAATTGACTATATCTTGTGTCAAGATGACATAAAATTAGCCAGCA  250

seq1  CAGTGGGAAAATTCCTTGCTGAACAAGTGTAAGTCTCTGAGTTTGACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAAAATTCCTTGCTGAACAAGTGTAAGTCTCTGAGTTTGACTTC  300

seq1  CAGACCCAAGAATGATTATCTTCTGTAATCTCAGTGTTTCTATGATGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAAGAATGATTATCTTCTGTAATCTCAGTGTTTCTATGATGCGA  350

seq1  TGGAAGGTGGAGACAAGAGAATTCCCAGAAGTTCATGGGCCAGATAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTGGAGACAAGAGAATTCCCAGAAGTTCATGGGCCAGATAGCCT  400

seq1  GAAAACAAGATAGCCTGTCTCAACCTATTCAGAAGGCAAGCATTAGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAGATAGCCTGTCTCAACCTATTCAGAAGGCAAGCATTAGCACT  450

seq1  CAAGGCTGGCTGCTGATCTCCAGATCTGCATACCCATATATACACACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGCTGCTGATCTCCAGATCTGCATACCCATATATACACACTCA  500

seq1  AAAATATTCATTTTTTGTAAACAAAGCTTAACTTGTTTCAGCAAGCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCATTTTTTGTAAACAAAGCTTAACTTGTTTCAGCAAGCTTAT  550

seq1  TAAGCATATGTATAGCATTATTTCCTGTCATCTTAAAATGCCTGCAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATATGTATAGCATTATTTCCTGTCATCTTAAAATGCCTGCAAAAT  600

seq1  ATTCCACTTCAGCCTTTCCAAAAAGAAATAACAATAAGCTCATAAAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTTCAGCCTTTCCAAAAAGAAATAACAATAAGCTCATAAAGATT  650

seq1  GAGTTTCTGATAAATATTTCTAAATACTGTGTTTTCTTTATCAAATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTGATAAATATTTCTAAATACTGTGTTTTCTTTATCAAATTTTT  700

seq1  CAGGAAGATACCTTAAAGATATAGTGTATAAAACTTTGAGATCACCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGATACCTTAAAGATATAGTGTATAAAACTTTGAGATCACCAAAT  750

seq1  CTCTCCATGGTTCATTTCCCAACAGAGTCTCTGGAAGGAGAAAAGGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATGGTTCATTTCCCAACAGAGTCTCTGGAAGGAGAAAAGGCATA  800

seq1  AAATTAGCGAGAGCGCATCATTCAATTCAGTGACCCGCCACAAAACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCGAGAGCGCATCATTCAATTCAGTGACCCGCCACAAAACAGAG  850

seq1  CTATAA-TTCTGTAGCATCTCCGCTATGGTTGAGGATTAGGCCGAGGACC  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTTCTGTAGCATCTCCGCTATGGTTGAGGATTAGGCCGAGGACC  900

seq1  GGGTCTCAGAGGCTAATTAAAGCACCCGAAGAAGGATGCAGAGGACAATT  949
      ||||||||||||||||||||||||||||||||| |||||||| ||| |||
seq2  GGGTCTCAGAGGCTAATTAAAGCACCCGAAGAA-GATGCAGA-GAC-ATT  947

seq1  AGAATGGATCGCAGAGCACCAGCGTTGCCCCAGCTTTATGAGATCCTTTT  999
      || |||||||||||||||||||||||| |||||||||||||||||| |||
seq2  AG-ATGGATCGCAGAGCACCAGCGTTG-CCCAGCTTTATGAGATCC-TTT  994

seq1  ACAGCTGGGCTTCTAAATGGAGAACTGG-CTTTATGTC-ACCATAAATTA  1047
      |||||||||| ||||||| ||| ||||| ||||||||| ||||| |||||
seq2  ACAGCTGGGCCTCTAAAT-GAG-ACTGGCCTTTATGTCAACCAT-AATTA  1041

seq1  CA  1049
      ||
seq2  CA  1043


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