BAC Information

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BAC

Clone NameB6Ng01-316P20
Chromosome12 (Build37)
Map Location 119,847,443 - 119,942,747
singlet/doubletdoublet
Overlap genenone
Upstream geneRapgef5, Cdca7l, Dnahc11, Sp4, LOC100042993, LOC668611
Downstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316P20.bB6Ng01-316P20.g
ACCGA107244GA107245
length1,1571,128
definitionB6Ng01-316P20.b B6Ng01-316P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,847,443 - 119,848,602)(119,941,618 - 119,942,747)
sequence
gaattccctgaggcatttcatatgggactaaagatctcatttgtcctcct
gatgacaaaattaaaagttccttctgtcgtatgcattccaaacttagttt
ttgctgaaaggctacattctcttttaaaataatagcgtttgaagtgaaag
attgtataataatgggttaaaaagtataccctgtattttcttcaattata
attatgtagtgagcttaatgaaataactttgaaaggagtgggctacagag
aaagctgaaaagggacagccaggcctttaaggactggggatgtagcaatt
ccttccagtggggagaaactggagtgactctgttctcttcaaaatgacac
aaacttactatttattataggctgcattaagaaattgggacacctcttgg
gtggagtcataagacattttggtagttaacttctactttttcatgctaat
gattttaaatatttccaattaaagaaattcatcacagaacaagcactagc
ctacagggaagttcaccagagaggtgctatttaaataccttaaaacaaaa
atttgcctcaccatggagtagcttccctttaatttaaatcccataaaact
aaatcagaataaaacaatagagctttgtcaaagaggaaagaaaaccctgc
cttctccttttgtggtggttgggaaggagtatccaaattatttcttctct
gcagttaagttatagttgctttaaaaaggattgtggtattagtttaaaca
ttgtttcctgggaactctgaatgtgtggttttacaaagattatttccttt
gttgcatcatgcccaagttttcaatagtagtcatcagggtttgttcttca
gaagaccatatttctagagagccagccagtccttgttcaactgaataggg
agaatacataacgtatgtattattactttttgtatagttgtgacaaagcc
tgatataacaactgaagtgaggaatagtttatgtgcttctgatttcaggc
ctccggtctgtggttgcttggctcctgcttcttgggtagaccttcacaga
gcgaagattgagttatgggatgagcagaaggctagtaggatctaagaact
tctcaacataatgcgccattctctggaattactctgacttgcattcagtc
tgtggga

gaattcacagtcttacagtatcattagccaactgggaacttctatgtggt
gtccgcagggcttctgggtagacagcaagaaccctctcatgagaccagag
aggcttgacaaaggaggatcttcagaccggacattttctccaagcaactg
actttgtgcttttcctctgttccctgttcttcacgagtctctctacccaa
gtcacccaaggagccagaaacttgactggcgtggaaggggacgctgcgct
ggcgttcctctcccatcaagacagggcacatggggcccgttacaagataa
atagcagtgcggaaacaatcggcttacccaacaactgcctgagcgctata
gtcagtgtcttttctgtaattattgcatttaatacagctagttacttgca
caaaagagcttccggatccagccgtttccactgggggctgtttaggaatg
cacaggcccatcatttagtcctgatattgttggcttgtcagaattgatca
tagctcttgacgggaacacctctagctcctttttttatggagtgcctcgc
agtgacatttcacattgtttaactaggagtgatctgttagtttatatttt
atctaaaactgcagatcagatgacctccctcagggcctaaatacatgaat
ccttttcgcatgttataattaatagtggagccaggagagaaattcgtaac
taggggccgaagagctgggcagagctgcttgtcagagagaaggaaattcc
accccagattagcttatttttaagcacgtcaagctctacacacaaacatg
atctattgcttccttgtaatgtctgtttgggcccacatgctccggggcag
tgtcagacactgctgtaaattttgtctgagtcagggcaattctgattgat
ctctgagtgtaaaatcgataagaagacactgtcattttcttaaaggatga
gctagaaaagggaaataaattaagacttccacagagtgtctatctccagt
gctcattatcagtggtggtctgtactttgtaatggttccgctcggcttta
tcttccaggtgctcttctgtgctactgccagtgccttttctccgcgttat
gtatattcaatcccaggcgcaaggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119847443_119848602
seq2: B6Ng01-316P20.b_48_1204

seq1  GAATTCCCTGAGGCATTTCATATGGGACTAAAGATCTCATTTGTCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAGGCATTTCATATGGGACTAAAGATCTCATTTGTCCTCCT  50

seq1  GATGACAAAATTAAAAGTTCCTTCTGTCGTATGCATTCCAAACTTAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAAATTAAAAGTTCCTTCTGTCGTATGCATTCCAAACTTAGTTT  100

seq1  TTGCTGAAAGGCTACATTCTCTTTTAAAATAATAGCGTTTGAAGTGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAAGGCTACATTCTCTTTTAAAATAATAGCGTTTGAAGTGAAAG  150

seq1  ATTGTATAATAATGGGTTAAAAAGTATACCCTGTATTTTCTTCAATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAATAATGGGTTAAAAAGTATACCCTGTATTTTCTTCAATTATA  200

seq1  ATTATGTAGTGAGCTTAATGAAATAACTTTGAAAGGAGTGGGCTACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAGTGAGCTTAATGAAATAACTTTGAAAGGAGTGGGCTACAGAG  250

seq1  AAAGCTGAAAAGGGACAGCCAGGCCTTTAAGGACTGGGGATGTAGCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAAAAGGGACAGCCAGGCCTTTAAGGACTGGGGATGTAGCAATT  300

seq1  CCTTCCAGTGGGGAGAAACTGGAGTGACTCTGTTCTCTTCAAAATGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGTGGGGAGAAACTGGAGTGACTCTGTTCTCTTCAAAATGACAC  350

seq1  AAACTTACTATTTATTATAGGCTGCATTAAGAAATTGGGACACCTCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACTATTTATTATAGGCTGCATTAAGAAATTGGGACACCTCTTGG  400

seq1  GTGGAGTCATAAGACATTTTGGTAGTTAACTTCTACTTTTTCATGCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTCATAAGACATTTTGGTAGTTAACTTCTACTTTTTCATGCTAAT  450

seq1  GATTTTAAATATTTCCAATTAAAGAAATTCATCACAGAACAAGCACTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAATATTTCCAATTAAAGAAATTCATCACAGAACAAGCACTAGC  500

seq1  CTACAGGGAAGTTCACCAGAGAGGTGCTATTTAAATACCTTAAAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGGAAGTTCACCAGAGAGGTGCTATTTAAATACCTTAAAACAAAA  550

seq1  ATTTGCCTCACCATGGAGTAGCTTCCCTTTAATTTAAATCCCATAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTCACCATGGAGTAGCTTCCCTTTAATTTAAATCCCATAAAACT  600

seq1  AAATCAGAATAAAACAATAGAGCTTTGTCAAAGAGGAAAGAAAACCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAATAAAACAATAGAGCTTTGTCAAAGAGGAAAGAAAACCCTGC  650

seq1  CTTCTCCTTTTGTGGTGGTTGGGAAGGAGTATCCAAATTATTTCTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTTTGTGGTGGTTGGGAAGGAGTATCCAAATTATTTCTTCTCT  700

seq1  GCAGTTAAGTTATAGTTGCTTTAAAAAGGATTGTGGTATTAGTTTAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAGTTATAGTTGCTTTAAAAAGGATTGTGGTATTAGTTTAAACA  750

seq1  TTGTTTCCTGGGAACTCTGAATGTGTGGTTTTACAAAGATTATTTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTGGGAACTCTGAATGTGTGGTTTTACAAAGATTATTTCCTTT  800

seq1  GTTGCATCATGCCCAAGTTTTCAATAGTAGTCATCAGGGTTTGTTCTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATCATGCCCAAGTTTTCAATAGTAGTCATCAGGGTTTGTTCTTCA  850

seq1  GAAGACCATA-TTCTAGAGAGCCAGCCAGTCCTTGTTCAACTGAATAGGG  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCATATTTCTAGAGAGCCAGCCAGTCCTTGTTCAACTGAATAGGG  900

seq1  AGAATACATAACGTATGTATTATTACTTTTTGTATAGTTGTGACAAAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AGAATACATAACGTATGTATTATTACTTTTTGTATAGTTGTGAC--AAAG  948

seq1  CCTGATATAAACAACTGAAGTGAGGAATAGTTTATGTGGCTTCTGATTTC  999
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGATAT-AACAACTGAAGTGAGGAATAGTTTATGT-GCTTCTGATTTC  996

seq1  AGGCCT-CGGTCTGTGGTTGCTTGGCTCCTGC-TCTTGGGTAGAACCTCA  1047
      |||||| ||||||||||||||||||||||||| ||||||||||| | |||
seq2  AGGCCTCCGGTCTGTGGTTGCTTGGCTCCTGCTTCTTGGGTAGACCTTCA  1046

seq1  CAGAGGCAGAGATTGAGTTATTGGGATGAGCAGGAAGC-AGAGAGATCTA  1096
      |||| ||  ||||||||||| |||||||||||| | || ||   ||||||
seq2  CAGA-GCGAAGATTGAGTTA-TGGGATGAGCAGAAGGCTAGTAGGATCTA  1094

seq1  AGGAACTCTCACACATTATGCGCCTTTCTTCCTG--ATTACTCTGTCTGG  1144
      || |  ||||| |||| ||||||| ||||  |||  ||||||||| || |
seq2  AGAACTTCTCA-ACATAATGCGCCATTCT--CTGGAATTACTCTGACTTG  1141

seq1  CATTCAGTCTGTGGGA  1160
      ||||||||||||||||
seq2  CATTCAGTCTGTGGGA  1157


seq1: chr12_119941618_119942747
seq2: B6Ng01-316P20.g_67_1194 (reverse)

seq1  CCCTCC-TGCG-CTGGGATGAAATATACATAACGC-GAGAAAGGGCACTG  47
      |||||| |||| |||||||  |||||||||||||| |||||| |||||||
seq2  CCCTCCTTGCGCCTGGGATTGAATATACATAACGCGGAGAAAAGGCACTG  50

seq1  GCAAGTAGCCACAGGAAGAGCACCTGGAAGATTAAAGCCGAGGCCGGAAC  97
      || ||||| |||| ||||||||||||||||| ||||||||||  ||||||
seq2  GC-AGTAG-CACA-GAAGAGCACCTGGAAGA-TAAAGCCGAG--CGGAAC  94

seq1  ATTAACAAAGTACAGACCA-CACTGAATTAATGAGCACTGGAGATAGACA  146
        | ||||||||||||||| ||||||  ||||||||||||||||||||||
seq2  CATTACAAAGTACAGACCACCACTGA--TAATGAGCACTGGAGATAGACA  142

seq1  CTCTGTGG-AGTCTTAATTTATTTCCCTTTTCTAGCTCATCCTTTAAGAA  195
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGAAGTCTTAATTTATTTCCCTTTTCTAGCTCATCCTTTAAGAA  192

seq1  AATGACAGTGTCTTCTTATCGATTTTACACTCAGAGATCAATCAGAATTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGTGTCTTCTTATCGATTTTACACTCAGAGATCAATCAGAATTG  242

seq1  CCCTGACTCAGACAAAATTTACAGCAGTGTCTGACACTG-CCCGGAGCAT  294
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCTGACTCAGACAAAATTTACAGCAGTGTCTGACACTGCCCCGGAGCAT  292

seq1  GTGGGCCCAAACAGACATTACAAGGAAGCAATAGATCATGTTTGTGTGTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCCAAACAGACATTACAAGGAAGCAATAGATCATGTTTGTGTGTA  342

seq1  GAGCTTGACGTGCTTAAAAATAAGCTAATCTGGGGTGGAATTTCCTTCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGACGTGCTTAAAAATAAGCTAATCTGGGGTGGAATTTCCTTCTC  392

seq1  TCTGACAAGCAGCTCTGCCCAGCTCTTCGGCCCCTAGTTACGAATTTCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGCAGCTCTGCCCAGCTCTTCGGCCCCTAGTTACGAATTTCTC  442

seq1  TCCTGGCTCCACTATTAATTATAACATGCGAAAAGGATTCATGTATTTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTCCACTATTAATTATAACATGCGAAAAGGATTCATGTATTTAG  492

seq1  GCCCTGAGGGAGGTCATCTGATCTGCAGTTTTAGATAAAATATAAACTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGGGAGGTCATCTGATCTGCAGTTTTAGATAAAATATAAACTAA  542

seq1  CAGATCACTCCTAGTTAAACAATGTGAAATGTCACTGCGAGGCACTCCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCACTCCTAGTTAAACAATGTGAAATGTCACTGCGAGGCACTCCAT  592

seq1  AAAAAAAGGAGCTAGAGGTGTTCCCGTCAAGAGCTATGATCAATTCTGAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGAGCTAGAGGTGTTCCCGTCAAGAGCTATGATCAATTCTGAC  642

seq1  AAGCCAACAATATCAGGACTAAATGATGGGCCTGTGCATTCCTAAACAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACAATATCAGGACTAAATGATGGGCCTGTGCATTCCTAAACAGC  692

seq1  CCCCAGTGGAAACGGCTGGATCCGGAAGCTCTTTTGTGCAAGTAACTAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGGAAACGGCTGGATCCGGAAGCTCTTTTGTGCAAGTAACTAGC  742

seq1  TGTATTAAATGCAATAATTACAGAAAAGACACTGACTATAGCGCTCAGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAATGCAATAATTACAGAAAAGACACTGACTATAGCGCTCAGGC  792

seq1  AGTTGTTGGGTAAGCCGATTGTTTCCGCACTGCTATTTATCTTGTAACGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGGGTAAGCCGATTGTTTCCGCACTGCTATTTATCTTGTAACGG  842

seq1  GCCCCATGTGCCCTGTCTTGATGGGAGAGGAACGCCAGCGCAGCGTCCCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATGTGCCCTGTCTTGATGGGAGAGGAACGCCAGCGCAGCGTCCCC  892

seq1  TTCCACGCCAGTCAAGTTTCTGGCTCCTTGGGTGACTTGGGTAGAGAGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGCCAGTCAAGTTTCTGGCTCCTTGGGTGACTTGGGTAGAGAGAC  942

seq1  TCGTGAAGAACAGGGAACAGAGGAAAAGCACAAAGTCAGTTGCTTGGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAAGAACAGGGAACAGAGGAAAAGCACAAAGTCAGTTGCTTGGAGA  992

seq1  AAATGTCCGGTCTGAAGATCCTCCTTTGTCAAGCCTCTCTGGTCTCATGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCGGTCTGAAGATCCTCCTTTGTCAAGCCTCTCTGGTCTCATGA  1042

seq1  GAGGGTTCTTGCTGTCTACCCAGAAGCCCTGCGGACACCACATAGAAGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCTTGCTGTCTACCCAGAAGCCCTGCGGACACCACATAGAAGTT  1092

seq1  CCCAGTTGGCTAATGATACTGTAAGACTGTGAATTC  1130
      ||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGGCTAATGATACTGTAAGACTGTGAATTC  1128


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