BAC Information

Click to search

BAC

Clone NameB6Ng01-317A20
Chromosome12 (Build37)
Map Location 106,730,370 - 106,866,751
singlet/doubletdoublet
Overlap geneD430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik
Upstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081
Downstream gene4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317A20.bB6Ng01-317A20.g
ACCGA107292GA107293
length7181,164
definitionB6Ng01-317A20.b B6Ng01-317A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,866,211 - 106,866,751)(106,730,370 - 106,731,528)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccgttccccagctgaggagttctgaatccacgctggatcctt
ctcaacagtctgttttacgggaacacttcattaccatgacccgaagttct
ggttctggaatgagggatcttccttgcgccggtgatggtagtttccgtcc
cgggttttcttgtcccaggattttctcgtcccaggtcttctcgtaccggg
tctcagcaccaactcttacccgcgttcactaccggccaggaaagaacgca
acaaaccggaatcttctgcggcaaagctttattgcttacatcttcaggag
ccagagagcaagagagcaagagctctattgcttacatctttaggagccag
agcgcaagagcgctagagtgcaagagccagagcaagaaggagaatggtga
aaccccgtcccttttaaggagaatcatcctctgcctaggacgtgtcactc
cgattggctgcagcccatcggccgagttgtcgtcacggggaaggcagagc
acatggggtggagaactacccttggcacatgcgcagattatttgtttacc
acttagaacacaggatgtcagcgccatcttgcaacggcgaatgtgagggc
ggctccccacacactgtgaattgttttatagagttagaggttttgtttga
gggagggtagtgaggatt
gaattcccgtgattcttcatttcaggcgccattgttccccaggggacatt
tggcaatgcctagagatcattcttgtctcgggtttacagaggagtgcgga
ggtcctgcctctagagggtggaggccagaggtgctgctcatccacacaca
caggatggaccctatggctgagtgctacccagcccccaaatgccaacggc
accgaagatgggagactccatcagacctcagagtccaaatcgatggggag
ttttccaaagctgcacccgtcatgtgtgagtcagatcacacgtgggtcag
agaaaatcagagcacagaggctgctcaaggtgagagaatgtcagccatgt
gactgctccctgggtggagatgaccctacgatacagccagactgctgagg
ctgagcctgcctcccacctgtgactctgtccaggacctctgaggcctgcc
tctcaccagggcacctgagaaacatgatcagtggagagctcctgatgggg
acaggaacagcatctgacaaatccaggtctcctttctgaccctctgtgtc
ccccagccctgctcgccaaagctgcagacattctaactctttcttctgtc
taactctttccggaattcttacccatcacctgctgctcacggattccagc
cgttcaccaggagagcatcagccaagcttctgtgtttgtgacgattgctt
agccagcttgtaaatgtgacatggaggtactttaactgttgttctgggtc
cctgctgcccaggcacctggttctctgtgtattactggcttctattttgc
agcagaaaggttctttgctgatgtaagattaacgtgtgctctcttgaaag
gtatgatggtgacacttccctgtgttagctttcttgctatgggttgtcat
tttctatttcaattaaacaaaaggaagatttaactctgtgtctggcttcc
acacacttgtctttgaaagccacagctccagggtccactgaggcaggata
aatccttcccacccctgctcccctctgactcgctgtgttatcacagctgg
aggtaaagcagagctgccagaccagtcaacccatcaacttctcctgaccc
ttgtacccgccattctggaaagacaagtatttccgtcacctttcctacct
tcagcaacgtgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106866211_106866751
seq2: B6Ng01-317A20.b_221_761 (reverse)

seq1  AATCCTCACTACCCTCCCTCAAACAAAACCTCTAACTCTATAAAACAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCACTACCCTCCCTCAAACAAAACCTCTAACTCTATAAAACAATT  50

seq1  CACAGTGTGTGGGGAGCCGCCCTCACATTCGCCGTTGCAAGATGGCGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTGTGGGGAGCCGCCCTCACATTCGCCGTTGCAAGATGGCGCTG  100

seq1  ACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGG  150

seq1  TAGTTCTCCACCCCATGTGCTCTGCCTTCCCCGTGACGACAACTCGGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCCACCCCATGTGCTCTGCCTTCCCCGTGACGACAACTCGGCCG  200

seq1  ATGGGCTGCAGCCAATCGGAGTGACACGTCCTAGGCAGAGGATGATTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGCAGCCAATCGGAGTGACACGTCCTAGGCAGAGGATGATTCTC  250

seq1  CTTAAAAGGGACGGGGTTTCACCATTCTCCTTCTTGCTCTGGCTCTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGGGACGGGGTTTCACCATTCTCCTTCTTGCTCTGGCTCTTGCA  300

seq1  CTCTAGCGCTCTTGCGCTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCGCTCTTGCGCTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCT  350

seq1  TGCTCTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTGCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTGCCG  400

seq1  CAGAAGATTCCGGTTTGTTGCGTTCTTTCCTGGCCGGTAGTGAACGCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATTCCGGTTTGTTGCGTTCTTTCCTGGCCGGTAGTGAACGCGGG  450

seq1  TAAGAGTTGGTGCTGAGACCCGGTACGAGAAGACCTGGGACGAGAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTGGTGCTGAGACCCGGTACGAGAAGACCTGGGACGAGAAAATC  500

seq1  CTGGGACAAGAAAACCCGGGACGGAAACTACCATCACCGGC  541
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACAAGAAAACCCGGGACGGAAACTACCATCACCGGC  541

seq1: chr12_106730370_106731528
seq2: B6Ng01-317A20.g_68_1231

seq1  GAATTCCCGTGATTCTTCATTTCAGGCGCCATTGTTCCCCAGGGGACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTGATTCTTCATTTCAGGCGCCATTGTTCCCCAGGGGACATT  50

seq1  TGGCAATGCCTAGAGATCATTCTTGTCTCGGGTTTACAGAGGAGTGCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATGCCTAGAGATCATTCTTGTCTCGGGTTTACAGAGGAGTGCGGA  100

seq1  GGTCCTGCCTCTAGAGGGTGGAGGCCAGAGGTGCTGCTCATCCACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGCCTCTAGAGGGTGGAGGCCAGAGGTGCTGCTCATCCACACACA  150

seq1  CAGGATGGACCCTATGGCTGAGTGCTACCCAGCCCCCAAATGCCAACGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGACCCTATGGCTGAGTGCTACCCAGCCCCCAAATGCCAACGGC  200

seq1  ACCGAAGATGGGAGACTCCATCAGACCTCAGAGTCCAAATCGATGGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAGATGGGAGACTCCATCAGACCTCAGAGTCCAAATCGATGGGGAG  250

seq1  TTTTCCAAAGCTGCACCCGTCATGTGTGAGTCAGATCACACGTGGGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAAGCTGCACCCGTCATGTGTGAGTCAGATCACACGTGGGTCAG  300

seq1  AGAAAATCAGAGCACAGAGGCTGCTCAAGGTGAGAGAATGTCAGCCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCAGAGCACAGAGGCTGCTCAAGGTGAGAGAATGTCAGCCATGT  350

seq1  GACTGCTCCCTGGGTGGAGATGACCCTACGATACAGCCAGACTGCTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCCCTGGGTGGAGATGACCCTACGATACAGCCAGACTGCTGAGG  400

seq1  CTGAGCCTGCCTCCCACCTGTGACTCTGTCCAGGACCTCTGAGGCCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTGCCTCCCACCTGTGACTCTGTCCAGGACCTCTGAGGCCTGCC  450

seq1  TCTCACCAGGGCACCTGAGAAACATGATCAGTGGAGAGCTCCTGATGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCAGGGCACCTGAGAAACATGATCAGTGGAGAGCTCCTGATGGGG  500

seq1  ACAGGAACAGCATCTGACAAATCCAGGTCTCCTTTCTGACCCTCTGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACAGCATCTGACAAATCCAGGTCTCCTTTCTGACCCTCTGTGTC  550

seq1  CCCCAGCCCTGCTCGCCAAAGCTGCAGACATTCTAACTCTTTCTTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCTGCTCGCCAAAGCTGCAGACATTCTAACTCTTTCTTCTGTC  600

seq1  TAACTCTTTCCGGAATTCTTACCCATCACCTGCTGCTCACGGATTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTCCGGAATTCTTACCCATCACCTGCTGCTCACGGATTCCAGC  650

seq1  CGTTCACCAGGAGAGCATCAGCCAAGCTTCTGTGTTTGTGACGATTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCACCAGGAGAGCATCAGCCAAGCTTCTGTGTTTGTGACGATTGCTT  700

seq1  AGCCAGCTTGTAAATGTGACATGGAGGTACTTTAACTGTTGTTCTGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTTGTAAATGTGACATGGAGGTACTTTAACTGTTGTTCTGGGTC  750

seq1  CCTGCTGCCCAGGCACCTGGTTCTCTGTGTATTACTGGCTTCTATTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCCCAGGCACCTGGTTCTCTGTGTATTACTGGCTTCTATTTTGC  800

seq1  AGCAGAAAGGTTCTTTGCTGATGTAAGATTAACGTGTGCTCTCTTG-AAG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCAGAAAGGTTCTTTGCTGATGTAAGATTAACGTGTGCTCTCTTGAAAG  850

seq1  GTATGATGGTGACACTTCCCTGTGTTAGCTTTCTTGCTAT-GGTTGTCAT  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTATGATGGTGACACTTCCCTGTGTTAGCTTTCTTGCTATGGGTTGTCAT  900

seq1  TTTCTATTTCAATTAAACAAAAGGAAGATTTAACTCTGTGTCTGGCTCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTCTATTTCAATTAAACAAAAGGAAGATTTAACTCTGTGTCTGGCTTCC  950

seq1  ACACACTTGTCTTTGAAAGCCACAGCTCCAGGGTCCACTGAGGCAGGATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTGTCTTTGAAAGCCACAGCTCCAGGGTCCACTGAGGCAGGATA  1000

seq1  AATCCCTTCCCACCCCTGCTCCCCTCTGAACTCGCTGTGTTATCACAGCT  1048
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAT-CCTTCCCACCCCTGCTCCCCTCTG-ACTCGCTGTGTTATCACAGCT  1048

seq1  -GAGGTAAAAGGCAGAGGCTG-CAGA-CAGCCAACCCATCA--CTCTCCT  1093
       ||||||||  ||||| |||| |||| ||| ||||||||||   ||||||
seq2  GGAGGTAAA--GCAGA-GCTGCCAGACCAGTCAACCCATCAACTTCTCCT  1095

seq1  GACCCCTGTACCCGCCA-TCT-GAGAG-CAAGGTTTATTTCCCTCACC--  1138
      ||||| ||||||||||| ||| || || ||||   ||||||| |||||  
seq2  GACCCTTGTACCCGCCATTCTGGAAAGACAAG---TATTTCCGTCACCTT  1142

seq1  TCCCACCTTCAGCAAC-TGCAC  1159
      ||| |||||||||||| |||||
seq2  TCCTACCTTCAGCAACGTGCAC  1164