BAC Information

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BAC

Clone NameB6Ng01-317G02
Chromosome12 (Build37)
Map Location 72,285,904 - 72,430,898
singlet/doubletdoublet
Overlap gene2700049A03Rik, LOC666162, Dact1
Upstream genePygl, Trim9, Txndc1, LOC100040965, LOC100041061, Frmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035
Downstream geneLOC100041190, Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317G02.bB6Ng01-317G02.g
ACCGA107539GA107540
length1,1131,073
definitionB6Ng01-317G02.b B6Ng01-317G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,429,744 - 72,430,898)(72,285,904 - 72,286,962)
sequence
gaattcctatgacagacaacctcatggttatcaacatggagtcctaagtt
aacatatttagaaatgacaaatgcctctcagggaatcgctgaagagcatc
cttaggacagtctcaggtgcaaaggacaagtcaagtttaaagagacctca
gctgaaaacctcagctacaagcaacgtgtaggccagagatgctaaatcct
gaataaaaacaaaattaatttcatttgaaaattattgaataccacgtaaa
atattatgtaaccaccacaaaatgacaattggaaagactgagaaaatctg
tgtcatggtaagcatctatatttttgcacataagtacatgcagcatgctt
tatacagataccaatatatgtatatacgtacacaatatacacatgtacaa
tagcaaaactttggtacatgcatagaaaaaacacttaaaagaaccccacc
gaaatgctagtggttgtttgcttacaaaagtaaagtaatagtaaaaaaat
gttttctattggttaaattttattttatgtgaatgttttgggttactttt
atatttcaaaacttgggtacagagataaaatgaggccttagcacttttac
tcaagtgccatggtactgttcctaccaagatttgtgtttcaggaatgaaa
tctatgtctctggcagtgagccctatttttagcctcctaaatcctttcct
ctaaatacctagccacgagattccagaggaagaatgttcctcctgtagac
cagttttccctcttcaaaaataatgttaactcttacgcaatgtgaactat
cattttaggacaaaactctcttgtagggttacacgttaatggtcaacagt
tacccttgctgtttccaaaggtcctagaggggtgacacttactggtacac
ttctggaaaggcacacagagcacaaagcataggaagaagaaagaagaaag
aaagaaagaagaagaagaagaagaagaagaagaagaagagagagagaaga
agaagaagagagagagaagagagagagacagtcagaatagagatgtacat
gctaattctagatcttatactatattttcgatttcatagctctagtctat
acggttatacttt
gaattccttggtgatgtaattaacattccctagttgtttattattattat
tattattattattattattattattattattattattattattttgagat
tagctttcttgtagccccaggctggccttgaagtcactgtgcacctgagg
gtggccttgaactggataactggattcaagtatgagctatcatactcaat
ttagctttttccttttttttttttttttttttggagaaaatgtaaaatct
acagaaaagttacaagtgtattacagtgaccagtgaccattttttccctg
tatttactctctgtatttcacactggtggcagttgaacgtttctaaagtc
tatctctatacatgctatatgcttaaaaaaatattttaagcatatgagtg
ttttgtctggatgtttgtctgtctgcttcttgcatgcagtacccacacaa
gccagaagaaggcatctgatctcctggaacagagagataagtttccatgt
gggtgctggaaattgaacccatgtcctctgaagcaacagccagtgcgctt
aactgctaagtcatctctccagccctatattatattctttttaaaaaaaa
gtttgagagttgggaatatgtgactctacctcaaaagcattagcagcatt
ccctaaagaaatctttgtggtttacaggctcagaaatagctgcagagttt
tataaagttggtaacagagttaattttggatttgtatcattcctacgata
gattagaaaattctattcaacatagtgatggttgatcacacaaacaataa
tccaagttatataaaaatacatttttctctttaaactagttaaagaaagt
gttctgtagactctagatacttaaatattgtgttgtgacctgaaggtaca
aaagatcctcagttgagaagagggaaggtcagccggtcttccagcacaga
gtggaggaagccgagtgaagggatggagggccggaatgtgaccaagcaac
cgtttatgttgtacgagtgtcctagcccgttatttctataggtttactga
aatgattaattaacccagatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_72429744_72430898
seq2: B6Ng01-317G02.b_47_1159 (reverse)

seq1  AAAGTATAA-CGTATTAAGACTAAGAGCTTTATGAAATCGAAAATATAGG  49
      ||||||||| |||||  ||||| |||||  |||||||||||||||||| |
seq2  AAAGTATAACCGTAT--AGACT-AGAGC--TATGAAATCGAAAATATA-G  44

seq1  TATAAGAATTCTAGAATTTAAGGCATGTAACATTTCTTCTATTTCTGGCT  99
      |||||||  |||||||||    |||||| |||| |||     ||||| ||
seq2  TATAAGA--TCTAGAATT---AGCATGT-ACATCTCT----ATTCTGACT  84

seq1  TGTTCTCTCTCTTTCTTTCTCTCTCTCTTTTCTTTCTTTCTTTCTCTCTC  149
         ||||||||     ||||||||||||| |  |||     |||||||||
seq2  GTCTCTCTCTC-----TTCTCTCTCTCTTCTTCTTC-----TTCTCTCTC  124

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  199
      ||||       |||||   |||||   |||||   |||||   |||||||
seq2  TCTT------CTTCTT--CTTCTT--CTTCTT--CTTCTT--CTTCTTTC  160

seq1  TTTCTTTCTTTCTTTCTTTCTTTCCTATGCTTTGTGCTCTGTGTGCCTTT  249
      |||||||| |||||||||   |||||||||||||||||||||||||||||
seq2  TTTCTTTC-TTCTTTCTT--CTTCCTATGCTTTGTGCTCTGTGTGCCTTT  207

seq1  CCAGAAGTGTACCAGTAAGTGTCACCCCTCTAGGACCTTTGGAAACAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTGTACCAGTAAGTGTCACCCCTCTAGGACCTTTGGAAACAGCA  257

seq1  AGGGTAACTGTTGACCATTAACGTGTAACCCTACAAGAGAGTTTTGTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAACTGTTGACCATTAACGTGTAACCCTACAAGAGAGTTTTGTCCT  307

seq1  AAAATGATAGTTCACATTGCGTAAGAGTTAACATTATTTTTGAAGAGGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATAGTTCACATTGCGTAAGAGTTAACATTATTTTTGAAGAGGGA  357

seq1  AAACTGGTCTACAGGAGGAACATTCTTCCTCTGGAATCTCGTGGCTAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTCTACAGGAGGAACATTCTTCCTCTGGAATCTCGTGGCTAGGT  407

seq1  ATTTAGAGGAAAGGATTTAGGAGGCTAAAAATAGGGCTCACTGCCAGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGGAAAGGATTTAGGAGGCTAAAAATAGGGCTCACTGCCAGAGA  457

seq1  CATAGATTTCATTCCTGAAACACAAATCTTGGTAGGAACAGTACCATGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTTCATTCCTGAAACACAAATCTTGGTAGGAACAGTACCATGGC  507

seq1  ACTTGAGTAAAAGTGCTAAGGCCTCATTTTATCTCTGTACCCAAGTTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTAAAAGTGCTAAGGCCTCATTTTATCTCTGTACCCAAGTTTTG  557

seq1  AAATATAAAAGTAACCCAAAACATTCACATAAAATAAAATTTAACCAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAAGTAACCCAAAACATTCACATAAAATAAAATTTAACCAATA  607

seq1  GAAAACATTTTTTTACTATTACTTTACTTTTGTAAGCAAACAACCACTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTTTTTTACTATTACTTTACTTTTGTAAGCAAACAACCACTAG  657

seq1  CATTTCGGTGGGGTTCTTTTAAGTGTTTTTTCTATGCATGTACCAAAGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGGTGGGGTTCTTTTAAGTGTTTTTTCTATGCATGTACCAAAGTT  707

seq1  TTGCTATTGTACATGTGTATATTGTGTACGTATATACATATATTGGTATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTGTACATGTGTATATTGTGTACGTATATACATATATTGGTATC  757

seq1  TGTATAAAGCATGCTGCATGTACTTATGTGCAAAAATATAGATGCTTACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAGCATGCTGCATGTACTTATGTGCAAAAATATAGATGCTTACC  807

seq1  ATGACACAGATTTTCTCAGTCTTTCCAATTGTCATTTTGTGGTGGTTACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACAGATTTTCTCAGTCTTTCCAATTGTCATTTTGTGGTGGTTACA  857

seq1  TAATATTTTACGTGGTATTCAATAATTTTCAAATGAAATTAATTTTGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTACGTGGTATTCAATAATTTTCAAATGAAATTAATTTTGTTT  907

seq1  TTATTCAGGATTTAGCATCTCTGGCCTACACGTTGCTTGTAGCTGAGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGGATTTAGCATCTCTGGCCTACACGTTGCTTGTAGCTGAGGTT  957

seq1  TTCAGCTGAGGTCTCTTTAAACTTGACTTGTCCTTTGCACCTGAGACTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGAGGTCTCTTTAAACTTGACTTGTCCTTTGCACCTGAGACTGT  1007

seq1  CCTAAGGATGCTCTTCAGCGATTCCCTGAGAGGCATTTGTCATTTCTAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGATGCTCTTCAGCGATTCCCTGAGAGGCATTTGTCATTTCTAAA  1057

seq1  TATGTTAACTTAGGACTCCATGTTGATAACCATGAGGTTGTCTGTCATAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAACTTAGGACTCCATGTTGATAACCATGAGGTTGTCTGTCATAG  1107

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1113

seq1: chr12_72285904_72286962
seq2: B6Ng01-317G02.g_67_1139

seq1  GAATTCCTTGGTGATGTAATTAACATTCCCTAGTTGT---TTATTATTAT  47
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  GAATTCCTTGGTGATGTAATTAACATTCCCTAGTTGTTTATTATTATTAT  50

seq1  TATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGAGAT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGAGAT  100

seq1  TAGCTTTCTTGTAGCCCCAGGCTGGCCTTGAAGTCACTGTGCACCTGAGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTCTTGTAGCCCCAGGCTGGCCTTGAAGTCACTGTGCACCTGAGG  150

seq1  GTGGCCTTGAACTGGATAACTGGATTCAAGTATGAGCTATCATACTCAAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTGAACTGGATAACTGGATTCAAGTATGAGCTATCATACTCAAT  200

seq1  TTAGCTTTTTCCTTTTTTTTTTTTTTTTTTTTGGAGAAAATGTAAAATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTTCCTTTTTTTTTTTTTTTTTTTTGGAGAAAATGTAAAATCT  250

seq1  ACAGAAAAGTTACAAGTGTATTACAGTGACCAGTGACCATTTTTTCCCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGTTACAAGTGTATTACAGTGACCAGTGACCATTTTTTCCCTG  300

seq1  TATTTACTCTCTGTATTTCACACTGGTGGCAGTTGAACGTTTCTAAAGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTCTCTGTATTTCACACTGGTGGCAGTTGAACGTTTCTAAAGTC  350

seq1  TATCTCTATACATGCTATATGCTTAAAAAAATATTTTAAGCATATGAGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATACATGCTATATGCTTAAAAAAATATTTTAAGCATATGAGTG  400

seq1  TTTTGTCTGGATGTTTGTCTGTCTGCTTCTTGCATGCAGTACCCACACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTGGATGTTTGTCTGTCTGCTTCTTGCATGCAGTACCCACACAA  450

seq1  GCCAGAAGAAGGCATCTGATCTCCTGGAACAGAGAGATAAGTTTCCATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGAAGGCATCTGATCTCCTGGAACAGAGAGATAAGTTTCCATGT  500

seq1  GGGTGCTGGAAATTGAACCCATGTCCTCTGAAGCAACAGCCAGTGCGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGGAAATTGAACCCATGTCCTCTGAAGCAACAGCCAGTGCGCTT  550

seq1  AACTGCTAAGTCATCTCTCCAGCCCTATATTATATTCTTTTTAAAAAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTAAGTCATCTCTCCAGCCCTATATTATATTCTTTTTAAAAAAAA  600

seq1  GTTTGAGAGTTGGGAATATGTGACTCTACCTCAAAAGCATTAGCAGCATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGAGTTGGGAATATGTGACTCTACCTCAAAAGCATTAGCAGCATT  650

seq1  CCCTAAAGAAATCTTTGTGGTTTACAGGCTCAGAAATAGCTGCAGAGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGAAATCTTTGTGGTTTACAGGCTCAGAAATAGCTGCAGAGTTT  700

seq1  TATAAAGTTGGTAACAGAGTTAATTTTGGATTTGTATCATTCCTACGATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTTGGTAACAGAGTTAATTTTGGATTTGTATCATTCCTACGATA  750

seq1  GATTAG-AAATTCTATTCAACATAGTGATGG-TGATCACACAAACAATAA  795
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  GATTAGAAAATTCTATTCAACATAGTGATGGTTGATCACACAAACAATAA  800

seq1  TCCAAG-TATAT-AAAATACA-TTTTCTC-TTAAACTAG-TAAAGAAGGT  840
      |||||| ||||| |||||||| ||||||| ||||||||| ||||||| ||
seq2  TCCAAGTTATATAAAAATACATTTTTCTCTTTAAACTAGTTAAAGAAAGT  850

seq1  G-TCTGTAGACTCTAGATAC-TAAATA-TGTG-TGTGACCTGAAGGTACA  886
      | |||||||||||||||||| |||||| |||| |||||||||||||||||
seq2  GTTCTGTAGACTCTAGATACTTAAATATTGTGTTGTGACCTGAAGGTACA  900

seq1  AAAGATCCTCAG-TGAGAAGA-GGAAAGTCAG-CGGTCT--CAGCACAGA  931
      |||||||||||| |||||||| |||| ||||| ||||||  |||||||||
seq2  AAAGATCCTCAGTTGAGAAGAGGGAAGGTCAGCCGGTCTTCCAGCACAGA  950

seq1  GTGGGAGGAAGGCCGAGTGAGGGGATGGAGGGCCGGAATGTGAGCAAAGC  981
      || ||||||| ||||||||| |||||||||||||||||||||| | ||||
seq2  GT-GGAGGAA-GCCGAGTGAAGGGATGGAGGGCCGGAATGTGA-CCAAGC  997

seq1  AAACCGTTTATG-TGTACGAAGTGTCCTAGCCCGTTATTTCTATAGGTTT  1030
       ||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  -AACCGTTTATGTTGTACG-AGTGTCCTAGCCCGTTATTTCTATAGGTTT  1045

seq1  ACTGAAAATGATTAATAAAACCAGATTTT  1059
      |||| ||||||||||| || |||||||||
seq2  ACTG-AAATGATTAATTAACCCAGATTTT  1073