BAC Information

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BAC

Clone NameB6Ng01-317G18
Chromosome12 (Build37)12 (Build37)
Map Location 38,844,611 - 38,845,63369,918,120 - 69,918,408
singlet/doubletsingletsinglet
Overlap geneDgkb
Upstream geneMeox2, A530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317G18.bB6Ng01-317G18.g
ACCGA107569GA107570
length1,020965
definitionB6Ng01-317G18.b B6Ng01-317G18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,844,611 - 38,845,633)(69,918,120 - 69,918,408)
sequence
gaattcaaggaggcccagtatgaaaaaaaaaatttcaaactagaaatagg
agcaggtgcataattcctcctgggtacaaatattgaaaggctgagaaaaa
gtcgataaaatgggaataacaagatgcaaaaatacatgctagatatggaa
cgagagagggggggtgtcaaaagaagaaaataattgtaaattgaaacaaa
aagttaactctgccttcaaagtgcaacattaaaataatgtctccagagaa
tgtaacacatttcataagggatagagaagagattatcaattaaattgcaa
aagatcacaagtgctcaagtaaaatatacaggcaagaattggaaaactca
cttgatacagaaagagagaaatcaaccaataagggtggggcaggctttag
gtccatgggaaaaaaaatttagtctacttgataagccattgaagactttc
tcttttaaaaccatctttccaaacaatattggtgaaagtacatttgaacc
tcaaatattagtaagattcattttgttaacatttaaaagtagagacaggc
cttgaggtaaagaaggtcattaaatatcaggttttaattttgaaaccaat
atagatttatagatgtttcagtgccaaaataaaataagaccaaattgaga
ttgttctatcaatgtgatgtttcaaaggtgaggacctgtgatgcaaattt
gagctagcttagctcactttttatctatttttacaagcatgccattttac
cttacatagagacagttatgtgcccacacttgaatctaactaaaaggtca
gaatagaggcacattatgtaagatgagacaatctctatttttctaaaact
ttttcactttcaaaaattttgaaaaaggctatctatgtttgttgctgaat
atatcacaatgcaaattatatagcctttgaatttgtctagaaattattag
acagaacaaagtatatattttagtgatttttttaatttgggagttctcat
cttaaatttcagttttctgc

gaattctcataacaaggtcatggtggtttgtggtctttgtcagaattcag
tgtggggccaggggcaggagaattgctaatcttgttatggttatttctct
gagaacagctattattttggtagctacaggcttaatcattttgaccacta
aaatgatgtttttacatttgtttagtcagccagcttccttatctggctct
gcacttggcctgctagtacagtttggaaagtccgtttcgagggggaaggt
actgggtggtcttgaattcattttggatattacaaggccatgaaaggcca
ttcgtgaaggtacagccttagttgtagttgacagcccaggactaaggggt
catgcaaaggatttgaggcttggcatcatgaagagagcctatgagaggcc
attgatgaagcctagttgcagctaaagacccccctgtattggagatgttg
gtaccattggatgatgatcaagaacagcagtggcagtggagtggatcaac
ctggccttagagtgccattgagggcacagttggagaagtgatgcaaaccc
tttggagaagcacagaagatcatgtgtggatcccagacattgaaacaaga
agttgcaacatcgagtctgccttgaagaccttaagattttagagatgcca
gagccgtgggatatctactaggaaagctgctaacagggagtgtgaacagt
tcaggaaagaagtttgttgcagtcactgaagatgaaaaaggagttggaga
tcttaaaactactttgacattatacatggagattcagcgtttaatttgcc
cagctggtttcctttctttatttaggggttacagttaagtgattggatgg
atctctgaagagattttgactatagggacttggaagttggacgaaatgta
ctttttaattatgtatgactaacatatggcccccatagtccttgaacaag
cctatgggggccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_38844611_38845633
seq2: B6Ng01-317G18.b_51_1070 (reverse)

seq1  GCAGAAAACTGAAATTTAAAGATTGAAGAACTCCCAAATTAAAAAAATCA  50
      ||||||||||||||||| |||||   ||||||||||||||||||||||||
seq2  GCAGAAAACTGAAATTT-AAGAT--GAGAACTCCCAAATTAAAAAAATCA  47

seq1  CTAAAATATATACTTTGTTCTGTCTAATAATTTCTAGACAAATTCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATATATACTTTGTTCTGTCTAATAATTTCTAGACAAATTCAAAGG  97

seq1  CTATATAATTTGCATTGTGATATATTCAGCAACAAACATAGATAGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAATTTGCATTGTGATATATTCAGCAACAAACATAGATAGCCTTT  147

seq1  TTCAAAATTTTTGAAAGTGAAAAAGTTTTAGAAAAATAGAGATTGTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATTTTTGAAAGTGAAAAAGTTTTAGAAAAATAGAGATTGTCTCA  197

seq1  TCTTACATAATGTGCCTCTATTCTGACCTTTTAGTTAGATTCAAGTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATAATGTGCCTCTATTCTGACCTTTTAGTTAGATTCAAGTGTGG  247

seq1  GCACATAACTGTCTCTATGTAAGGTAAAATGGCATGCTTGTAAAAATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAACTGTCTCTATGTAAGGTAAAATGGCATGCTTGTAAAAATAGA  297

seq1  TAAAAAGTGAGCTAAGCTAGCTCAAATTTGCATCACAGGTCCTCACCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTGAGCTAAGCTAGCTCAAATTTGCATCACAGGTCCTCACCTTT  347

seq1  GAAACATCACATTGATAGAACAATCTCAATTTGGTCTTATTTTATTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCACATTGATAGAACAATCTCAATTTGGTCTTATTTTATTTTGG  397

seq1  CACTGAAACATCTATAAATCTATATTGGTTTCAAAATTAAAACCTGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAACATCTATAAATCTATATTGGTTTCAAAATTAAAACCTGATAT  447

seq1  TTAATGACCTTCTTTACCTCAAGGCCTGTCTCTACTTTTAAATGTTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACCTTCTTTACCTCAAGGCCTGTCTCTACTTTTAAATGTTAACA  497

seq1  AAATGAATCTTACTAATATTTGAGGTTCAAATGTACTTTCACCAATATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATCTTACTAATATTTGAGGTTCAAATGTACTTTCACCAATATTG  547

seq1  TTTGGAAAGATGGTTTTAAAAGAGAAAGTCTTCAATGGCTTATCAAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAGATGGTTTTAAAAGAGAAAGTCTTCAATGGCTTATCAAGTAG  597

seq1  ACTAAATTTTTTTTCCCATGGACCTAAAGCCTGCCCCACCCTTATTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTTTTTTTCCCATGGACCTAAAGCCTGCCCCACCCTTATTGGTT  647

seq1  GATTTCTCTCTTTCTGTATCAAGTGAGTTTTCCAATTCTTGCCTGTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTCTTTCTGTATCAAGTGAGTTTTCCAATTCTTGCCTGTATAT  697

seq1  TTTACTTGAGCACTTGTGATCTTTTGCAATTTAATTGATAATCTCTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGAGCACTTGTGATCTTTTGCAATTTAATTGATAATCTCTTCTC  747

seq1  TATCCCTTATGAAATGTGTTACATTCTCTGGAGACATTATTTTAATGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTATGAAATGTGTTACATTCTCTGGAGACATTATTTTAATGTTG  797

seq1  CACTTTGAAGGCAGAGTTAACTTTTTGTTTCAATTTACAATTATTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGAAGGCAGAGTTAACTTTTTGTTTCAATTTACAATTATTTTCTT  847

seq1  CTTTTGACACCCCCCCTCTCTCGTTCCATATCTAGCATGTATTTTTGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACACCCCCCCTCTCTCGTTCCATATCTAGCATGTATTTTTGCAT  897

seq1  CTTGTTATTCCCATTTTATCGACTTTTTCTCAGCCTTTCAATATTTGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATTCCCATTTTATCGACTTTTTCTCAGCCTTTCAATATTTGTAC  947

seq1  CCAGGAGGAATTATGCACCTGCTCCTATTTCTAGTTTGAAATTTTTTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGAATTATGCACCTGCTCCTATTTCTAGTTTGAAATTTTTTTTT  997

seq1  TCATACTGGGCCTCCTTGAATTC  1023
      |||||||||||||||||||||||
seq2  TCATACTGGGCCTCCTTGAATTC  1020


seq1: chr12_69918120_69918408
seq2: B6Ng01-317G18.g_65_349 (reverse)

seq1  TTGTAATATCCAAAATGAATTCAAGACCACCCAGTACCTTCCCCCTTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGTAATATCCAAAATGAATTCAAGACCACCCAGTACCTTCCCCC-TCGA  49

seq1  AAATGACTTTCCAAACTGAACTAGCAGGCAAAGTACAGAGCCAGATAAGG  100
      ||  |||||||||||||| |||||||||| |||| |||||||||||||||
seq2  AACGGACTTTCCAAACTGTACTAGCAGGCCAAGTGCAGAGCCAGATAAGG  99

seq1  AAGCTGGCTGACTAAACAAATGTAAAAACATAGTTTTAGCGGTCAAAATG  150
      |||||||||||||||||||||||||||||||  |||||| ||||||||||
seq2  AAGCTGGCTGACTAAACAAATGTAAAAACATCATTTTAGTGGTCAAAATG  149

seq1  ATTAAGCCTGCAGCTACCAAAACAATATTAGCTGTTCTCAGAGAAATAAC  200
      |||||||||| |||||||||   |||| ||||||||||||||||||||||
seq2  ATTAAGCCTGTAGCTACCAA---AATAATAGCTGTTCTCAGAGAAATAAC  196

seq1  CATAACAAGATTAGCAATTCTCCTGCCCCTTGCCCCACACTGAATTCTGA  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATAACAAGATTAGCAATTCTCCTGCCCCTGGCCCCACACTGAATTCTGA  246

seq1  CAAAGACCACAAACCACCCTGACCTTGTTGTGAGAATTC  289
      |||||||||||||||||| |||||||||| |||||||||
seq2  CAAAGACCACAAACCACCATGACCTTGTTATGAGAATTC  285


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