BAC Information

Click to search

BAC

Clone NameB6Ng01-317M08
Chromosome12 (Build37)
Map Location 63,071,416 - 63,184,829
singlet/doubletdoublet
Overlap geneLOC100040403
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707
Downstream geneLOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317M08.bB6Ng01-317M08.g
ACCGA107833GA107834
length5171,120
definitionB6Ng01-317M08.b B6Ng01-317M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,184,307 - 63,184,829)(63,071,416 - 63,072,150)
sequence
attatgtctctcctcatatggatagatttctaaaatgatgtctaggttaa
caaaccaatattacctccatcacacacatggcctgaatcaaaactgtgct
cctgcatatgctttgatttttgtagcaaagaaaagcaaatataaaaggaa
agatagatcatattttttattcaaacaaacattcagcctttgtgcaaaat
gaataaacagaagcagggtgagaggagagatgctggactagaaggagtat
aaaagagataaaccttttcttttgaagacacactttcaagaatattgtgt
cttcagtctaattacaaaacatcataatataaaagataattttctcctct
ctttttatatattcctggacattatgaaatatgttggataggatggggtt
aaaaatacttgttagaacaggggtaaacccaatgaaatcttcctgagcct
atatatatatatatatatatatatatatatatatatagagagagagagag
agagagagagagagaga

gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggactgggcgaagtg
gttgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacgttttccttttgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcagacgtgggagacaagctctctgctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctcttttggggaaggtgtacagttatct
ggtgtttggaccttttcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctatgttggttttgccaggaaggtggccggttgtctggagt
cgaagatgttgccgcctcagaagctctgtggctctcgccagaaaggtggc
cggttgtctggagccgaagatggtgccgccccagaagctctgtgactctt
gcccgtctcagaaatggctggcctctgtattccacatggtcacccctgca
gcctgccctccgcggagtcctggagccaagaaggctcccgccggcgcctg
tgacacaaacctctcaggccgggcagacccccgtgctctcaccaggaagg
tggccagctgtctggagctgaagatggcgccgcctcagaagctctgtggc
tctcgccaggaaggtggccggttgtctggagacgaagatggcgccacccc
agaagatctgcgactctcgcccatcccagaaatggctggcctctgtattc
cacatggtctcccgtgcagcctgccctccgcgcgaaaatagaagctaatt
ttgaaaaaatttaatagattatgaatgcaatatttaggtataaggatggc
accacggctaagaagcgctgatctatgaagagtcctgagttcaatttcca
gcaacaacaatggtggctcaaaaccatctgtaatgggaatttgtgtcatc
ttctggtgtgtctgatgacatgaccatgaaatcactataaaaaataatgt
tttttttaaatagaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63184307_63184829
seq2: B6Ng01-317M08.b_47_569 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATA  50

seq1  TATATATATATATATATAGGCTCAGGAAGATTTCATTGGGTTTACCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATAGGCTCAGGAAGATTTCATTGGGTTTACCCCTG  100

seq1  TTCTAACAAGTATTTTTAACCCCATCCTATCCAACATATTTCATAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAAGTATTTTTAACCCCATCCTATCCAACATATTTCATAATGTC  150

seq1  CAGGAATATATAAAAAGAGAGGAGAAAATTATCTTTTATATTATGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATATATAAAAAGAGAGGAGAAAATTATCTTTTATATTATGATGTT  200

seq1  TTGTAATTAGACTGAAGACACAATATTCTTGAAAGTGTGTCTTCAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTAGACTGAAGACACAATATTCTTGAAAGTGTGTCTTCAAAAGA  250

seq1  AAAGGTTTATCTCTTTTATACTCCTTCTAGTCCAGCATCTCTCCTCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTATCTCTTTTATACTCCTTCTAGTCCAGCATCTCTCCTCTCAC  300

seq1  CCTGCTTCTGTTTATTCATTTTGCACAAAGGCTGAATGTTTGTTTGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTGTTTATTCATTTTGCACAAAGGCTGAATGTTTGTTTGAATA  350

seq1  AAAAATATGATCTATCTTTCCTTTTATATTTGCTTTTCTTTGCTACAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGATCTATCTTTCCTTTTATATTTGCTTTTCTTTGCTACAAAA  400

seq1  ATCAAAGCATATGCAGGAGCACAGTTTTGATTCAGGCCATGTGTGTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCATATGCAGGAGCACAGTTTTGATTCAGGCCATGTGTGTGATG  450

seq1  GAGGTAATATTGGTTTGTTAACCTAGACATCATTTTAGAAATCTATCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATATTGGTTTGTTAACCTAGACATCATTTTAGAAATCTATCCAT  500

seq1  ATGAGGAGAGACATAATGAATTC  523
      |||||||||||||||||||||||
seq2  ATGAGGAGAGACATAATGAATTC  523


seq1: chr12_63071416_63072150
seq2: B6Ng01-317M08.g_454_1188

seq1  CCAAAACAGGATCTTTCCCAGAAGCTATGTTGGTTTTGCCAGGAAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAGGATCTTTCCCAGAAGCTATGTTGGTTTTGCCAGGAAGGTGG  50

seq1  CCGGTTGTCTGGAGTCGAAGATGTTGCCGCCTCAGAAGCTCTGTGGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTGTCTGGAGTCGAAGATGTTGCCGCCTCAGAAGCTCTGTGGCTCT  100

seq1  CGCCAGAAAGGTGGCCGGTTGTCTGGAGCCGAAGATGGTGCCGCCCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGAAAGGTGGCCGGTTGTCTGGAGCCGAAGATGGTGCCGCCCCAGA  150

seq1  AGCTCTGTGACTCTTGCCCGTCTCAGAAATGGCTGGCCTCTGTATTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGACTCTTGCCCGTCTCAGAAATGGCTGGCCTCTGTATTCCAC  200

seq1  ATGGTCACCCCTGCAGCCTGCCCTCCGCGGAGTCCTGGAGCCAAGAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACCCCTGCAGCCTGCCCTCCGCGGAGTCCTGGAGCCAAGAAGGC  250

seq1  TCCCGCCGGCGCCTGTGACACAAACCTCTCAGGCCGGGCAGACCCCCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCGGCGCCTGTGACACAAACCTCTCAGGCCGGGCAGACCCCCGTG  300

seq1  CTCTCACCAGGAAGGTGGCCAGCTGTCTGGAGCTGAAGATGGCGCCGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCAGGAAGGTGGCCAGCTGTCTGGAGCTGAAGATGGCGCCGCCT  350

seq1  CAGAAGCTCTGTGGCTCTCGCCAGGAAGGTGGCCGGTTGTCTGGAGACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTCTGTGGCTCTCGCCAGGAAGGTGGCCGGTTGTCTGGAGACGA  400

seq1  AGATGGCGCCACCCCAGAAGATCTGCGACTCTCGCCCATCCCAGAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCGCCACCCCAGAAGATCTGCGACTCTCGCCCATCCCAGAAATGG  450

seq1  CTGGCCTCTGTATTCCACATGGTCTCCCGTGCAGCCTGCCCTCCGCGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTGTATTCCACATGGTCTCCCGTGCAGCCTGCCCTCCGCGCGA  500

seq1  AAATAGAAGCTAATTTTGAGAAAATTTAATAGATTATGAATGCAATATTT  550
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATAGAAGCTAATTTTGAAAAAATTTAATAGATTATGAATGCAATATTT  550

seq1  AGGTAT-AGGATGGCACCACGGCTATG-AGCGCTGATCTATGAGAGGTCC  598
      |||||| |||||||||||||||||| | |||||||||||||||   ||||
seq2  AGGTATAAGGATGGCACCACGGCTAAGAAGCGCTGATCTATGAAGAGTCC  600

seq1  TGAGTTCAATTTCCAGCAACAAC-ATGGTGGCTCAAAACCATCTGTAATG  647
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAGTTCAATTTCCAGCAACAACAATGGTGGCTCAAAACCATCTGTAATG  650

seq1  GGATTTGTTGTCATCTTCTGGTGTGTCTGATGACAATGACAATGAAATCA  697
      ||| ||  |||||||||||||||||||||||||| ||||| |||||||||
seq2  GGAATTTGTGTCATCTTCTGGTGTGTCTGATGAC-ATGACCATGAAATCA  699

seq1  CTTATAAAAAATAAATGTTTTTTTTAAATAGAAATAAA  735
      | |||||||||| |||||||||||||||||||||||||
seq2  C-TATAAAAAAT-AATGTTTTTTTTAAATAGAAATAAA  735


| Home | SequenceCutter | Blast | Download |