BAC Information

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BAC

Clone NameB6Ng01-318F03
Chromosome12 (Build37)
Map Location 27,790,860 - 27,791,998
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318F03.bB6Ng01-318F03.g
ACCGA108242GA108243
length1,1421,155
definitionB6Ng01-318F03.b B6Ng01-318F03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacattcacactaaaaggaacatttttgactgtctgacacagatt
tctcatacattagcatatactgacattgtgtttcagtcattaggaattga
gtctatgttatttaatccctttggagaatatcatttctgagcattgaggt
aagaatagatctctgggtacagaagtctggatcatgataggttcatcagt
ctgatctcattgagaacatcttttgcaggtatccagggtcattagttttt
atttccactatagagcttatggaagtaacctagcatgctgggctgaatgg
gaaggtacagtgacttactctttggaactgacttgctgagacatctttgc
ccattgttcaaagatatcatctgacaactacaaacatatctggttcacag
aggctagatgcaatcatatttggttctcaggagagattctatctactata
cattgaattatgtcccctatagacatatgggagtcctgaatttcatagct
cagatggtgacctaatatggaaatcagggtccttgaaaatgttggttaag
acaaggctataatggggtagagatgcctgtctgctaacacagcaagcatc
cttataaagagaaacctggagagaagaacggcataggaacagatgtagag
ccttcagggatgaagctatgagccatggcactgggaggggtggagctggg
ttttctcattttcaaaattccagttctgctgacacctggacctttcactt
ctaggatttagagctgagagacaacaactttatcttgtttcaagtcattc
cgagtgtggtcctgtgttcggatgtcctagagagccaccaggcagacatc
catgagcatcagccttggaatctggtccacactgactctgtgcattcttc
tctgaccactctatactaagcataggtttgacaatagagtggaaaaggct
atgcttccctctacacatcaataccaaaaggaaagattatattgtgaata
ccccaggagtgtctttgggaaaatttgcccacatctagcatcagtatatg
aggtcagattacctaaccttacattctgatgaaacaagggaacccactgt
gttgcttccatttagtcaggtctcttggccattggattagaa
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatccacatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggagaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggatatagtactaccagaggatcccacaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccgtatttataatagccagaagctggaaagaacccagat
gcccctcaatagaggaatggatacagaaaatgtggtacatttacacaatg
taatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggcatcattctgagtgaggtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaatttgctaaacgcatgaaattcaag
aagaacaaagaccaaagtgtggacactttgccccttcttagaaatgggaa
caaaacacccatggaaggagttacagagacaaaatttggagctgtgaaga
aaggatggaccatctagtgattgccatatgcagggatccatcccataatc
agctcccaaatgctgacaccattgcatacactagcaagattttgctgaaa
agacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgatcacagtcagctattggatgggtcacacggccccca
atggaggagctagagaaattacccaaggagctaaagggaaactgcaaccc
tatagtggaacacaatatgaactaccagtaccctgggagctcttgtcttt
agctgcatatgttatcaaaagaatgggcctagcttgcccaatcacttgca
agagaggccaattggtatcttgccaatcttttatatatatggtcccaggt
attcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27790860_27791998
seq2: B6Ng01-318F03.b_45_1186 (reverse)

seq1  TTCTAATCTAACCATTTGCAAGAGA-CTGACT-AATGAAAGC-ACACAGT  47
      ||||||||   | ||   ||||||| |||||| |||| |||| |||||||
seq2  TTCTAATC---CAATGGCCAAGAGACCTGACTAAATGGAAGCAACACAGT  47

seq1  GGGT--CCTTG-TTCATCAGAAATGTAGGGTTAGGTAATCTGACCTCATA  94
      ||||  ||||| |||||||| |||||| ||||||||||||||||||||||
seq2  GGGTTCCCTTGTTTCATCAG-AATGTAAGGTTAGGTAATCTGACCTCATA  96

seq1  TACTGATGCTAGATGTGGGC-AATTTTCCAAAGAACACTCCTGGGGTA-T  142
      |||||||||||||||||||| |||||||| ||  |||||||||||||| |
seq2  TACTGATGCTAGATGTGGGCAAATTTTCCCAAAGACACTCCTGGGGTATT  146

seq1  CACAATATAATCTTTCCTTTTGGTATTTGATGTGTAGAGGGAAGCATAGC  192
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACAATATAATCTTTCCTTTTGGTA-TTGATGTGTAGAGGGAAGCATAGC  195

seq1  CTTTTCCACTCTATTGTCAAACCTATGCTTAGTATAGAGTGGTCAGAGAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCACTCTATTGTCAAACCTATGCTTAGTATAGAGTGGTCAGAGAA  245

seq1  GAATGCACAGAGTCAGTGTGGACCAGATTCCAAGGCTGATGCTCATGGAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACAGAGTCAGTGTGGACCAGATTCCAAGGCTGATGCTCATGGAT  295

seq1  GTCTGCCTGGTGGCTCTCTAGGACATCCGAACACAGGACCACACTCGGAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTGGTGGCTCTCTAGGACATCCGAACACAGGACCACACTCGGAA  345

seq1  TGACTTGAAACAAGATAAAGTTGTTGTCTCTCAGCTCTAAATCCTAGAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAAACAAGATAAAGTTGTTGTCTCTCAGCTCTAAATCCTAGAAG  395

seq1  TGAAAGGTCCAGGTGTCAGCAGAACTGGAATTTTGAAAATGAGAAAACCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTCCAGGTGTCAGCAGAACTGGAATTTTGAAAATGAGAAAACCC  445

seq1  AGCTCCACCCCTCCCAGTGCCATGGCTCATAGCTTCATCCCTGAAGGCTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACCCCTCCCAGTGCCATGGCTCATAGCTTCATCCCTGAAGGCTC  495

seq1  TACATCTGTTCCTATGCCGTTCTTCTCTCCAGGTTTCTCTTTATAAGGAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTGTTCCTATGCCGTTCTTCTCTCCAGGTTTCTCTTTATAAGGAT  545

seq1  GCTTGCTGTGTTAGCAGACAGGCATCTCTACCCCATTATAGCCTTGTCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGTGTTAGCAGACAGGCATCTCTACCCCATTATAGCCTTGTCTT  595

seq1  AACCAACATTTTCAAGGACCCTGATTTCCATATTAGGTCACCATCTGAGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACATTTTCAAGGACCCTGATTTCCATATTAGGTCACCATCTGAGC  645

seq1  TATGAAATTCAGGACTCCCATATGTCTATAGGGGACATAATTCAATGTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATTCAGGACTCCCATATGTCTATAGGGGACATAATTCAATGTAT  695

seq1  AGTAGATAGAATCTCTCCTGAGAACCAAATATGATTGCATCTAGCCTCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATAGAATCTCTCCTGAGAACCAAATATGATTGCATCTAGCCTCTG  745

seq1  TGAACCAGATATGTTTGTAGTTGTCAGATGATATCTTTGAACAATGGGCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGATATGTTTGTAGTTGTCAGATGATATCTTTGAACAATGGGCA  795

seq1  AAGATGTCTCAGCAAGTCAGTTCCAAAGAGTAAGTCACTGTACCTTCCCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCTCAGCAAGTCAGTTCCAAAGAGTAAGTCACTGTACCTTCCCA  845

seq1  TTCAGCCCAGCATGCTAGGTTACTTCCATAAGCTCTATAGTGGAAATAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCCAGCATGCTAGGTTACTTCCATAAGCTCTATAGTGGAAATAAA  895

seq1  AACTAATGACCCTGGATACCTGCAAAAGATGTTCTCAATGAGATCAGACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGACCCTGGATACCTGCAAAAGATGTTCTCAATGAGATCAGACT  945

seq1  GATGAACCTATCATGATCCAGACTTCTGTACCCAGAGATCTATTCTTACC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACCTATCATGATCCAGACTTCTGTACCCAGAGATCTATTCTTACC  995

seq1  TCAATGCTCAGAAATGATATTCTCCAAAGGGATTAAATAACATAGACTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTCAGAAATGATATTCTCCAAAGGGATTAAATAACATAGACTCA  1045

seq1  ATTCCTAATGACTGAAACACAATGTCAGTATATGCTAATGTATGAGAAAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAATGACTGAAACACAATGTCAGTATATGCTAATGTATGAGAAAT  1095

seq1  CTGTGTCAGACAGTCAAAAATGTTCCTTTTAGTGTGAATGTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCAGACAGTCAAAAATGTTCCTTTTAGTGTGAATGTGAATTC  1142