BAC Information

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BAC

Clone NameB6Ng01-318M14
Chromosome12 (Build37)
Map Location 101,959,246 - 102,147,678
singlet/doubletdoublet
Overlap geneRps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68
Upstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
Downstream gene0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M14.bB6Ng01-318M14.g
ACCGA108585GA108586
length1,088706
definitionB6Ng01-318M14.b B6Ng01-318M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,959,246 - 101,960,344)(102,146,975 - 102,147,678)
sequence
gaattcccgctcttgagggtctgagtcagaaccaccaactaagcaactca
cacaaccctaacaaacagaagtcacgttctaaaagccattagagtttcca
ttgttacaatacagtaaccttctgcaaccctctccttaatgttaggcaga
ctcccaaagatggaatcaaatgaattatccccccagcaacccttcatctt
ctaaagggtttagattatgtttacccatggttttgctgtagttgttggca
tgttagtaggaaacaattctatcacctaatgttaactgaatgagccaaaa
gcagacacctgatcaaaactaagccaataaagtcaataaattctctcaga
atttaactgaaactgacaaaaggatggtgtctgtagaactttaatcctgt
ccattttctacctcctgggaggaacctggacagcagtgaaaaaaacttgg
catatggactaggagagatttaagacacaggagcggcaatgcgagtgtct
ggtgctagtgattcctcagccttcccagtggagaagccacgttattaacc
acagcatgtaagacagcactcagtatataagaggtgacaaaatatttgtt
gaataaacgagtgggtaaaataatttccatttttccactagtgttcaaca
aagttacatctgactatttaaaggctaatggctttaatctttcttttgtt
gcatttatacattttatttatattattatacttaagaaataatatatcct
gattattagtttatatggtctcttcctttacagttggacacagaatattt
tctttggtatcttcaataccagaaaacagaaaatactcaagaatttatgt
ttaattgatttgcttaatcttgaattctgtactcttcagcttttatagcc
gctgccatcaatttatcaagacctgacatctgcaaaccttgcccttattt
ttcatccaaactgaatttcactcaacaatatctgaacatctacacacgca
caggctacatagacaaagtctctgccctcagggtcttactactactgaca
cagaacagactgtgtgtttgggaacatgatgttctggg
gaattcactcacacaagacataccactgtctccattgatttcataagtca
agcactcaaaaacaaatgttgaaccggcaagaggctgggatgagagaccc
ttgagtcttaagcctcccggaactacaccggtgaaaccttgtctcaaagc
aaaacaaaatcagaagccgagtccagccacgagaggagcatgcccctttc
tgtggtgtaaatatggctgatttcgagctgcctgcacggtgcaatagaac
atgggtgaggagggaagggggtgtgcagtgaccccgtacacgctgcaaaa
tacacccactatacataccataaaatgtgtaaacctctaaggcatagaac
tagtaaattaggaagtggatggattttgactttttgtgatctttattaca
ttgtttaatcatagcttgatacatttaccttctgtaagggccatctttaa
caactggttggcacagttcacccttctgccctcaggagccagaatgggcc
aactccagcctcacctgtatcgccacctctgaggagtgggctagggaagg
gagggacagaaggtcccaaaccaaaagaacagggacaggaagtgagactg
gcggtcccaacctgaaactgaggtacccgaatgctcctgcagcagtttct
cttcctcatccttccagctttagactgaccttgaagtgggggtggggggg
acagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101959246_101960344
seq2: B6Ng01-318M14.b_51_1138

seq1  GAATTCCCGCTCTTGAGGGTCTGAGTCAGAACCACCAACTAAGCAACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGCTCTTGAGGGTCTGAGTCAGAACCACCAACTAAGCAACTCA  50

seq1  CACAACCCTAACAAACAGAAGTCACGTTCTAAAAGCCATTAGAGTTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCTAACAAACAGAAGTCACGTTCTAAAAGCCATTAGAGTTTCCA  100

seq1  TTGTTACAATACAGTAACCTTCTGCAACCCTCTCCTTAATGTTAGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAATACAGTAACCTTCTGCAACCCTCTCCTTAATGTTAGGCAGA  150

seq1  CTCCCAAAGATGGAATCAAATGAATTATCCCCCCAGCAACCCTTCATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAAGATGGAATCAAATGAATTATCCCCCCAGCAACCCTTCATCTT  200

seq1  CTAAAGGGTTTAGATTATGTTTACCCATGGTTTTGCTGTAGTTGTTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGTTTAGATTATGTTTACCCATGGTTTTGCTGTAGTTGTTGGCA  250

seq1  TGTTAGTAGGAAACAATTCTATCACCTAATGTTAACTGAATGAGCCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTAGGAAACAATTCTATCACCTAATGTTAACTGAATGAGCCAAAA  300

seq1  GCAGACACCTGATCAAAACTAAGCCAATAAAGTCAATAAATTCTCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACCTGATCAAAACTAAGCCAATAAAGTCAATAAATTCTCTCAGA  350

seq1  ATTTAACTGAAACTGACAAAAGGATGGTGTCTGTAGAACTTTAATCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTGAAACTGACAAAAGGATGGTGTCTGTAGAACTTTAATCCTGT  400

seq1  CCATTTTCTACCTCCTGGGAGGAACCTGGACAGCAGTGAAAAAAACTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCTACCTCCTGGGAGGAACCTGGACAGCAGTGAAAAAAACTTGG  450

seq1  CATATGGACTAGGAGAGATTTAAGACACAGGAGCGGCAATGCGAGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGACTAGGAGAGATTTAAGACACAGGAGCGGCAATGCGAGTGTCT  500

seq1  GGTGCTAGTGATTCCTCAGCCTTCCCAGTGGAGAAGCCACGTTATTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAGTGATTCCTCAGCCTTCCCAGTGGAGAAGCCACGTTATTAACC  550

seq1  ACAGCATGTAAGACAGCACTCAGTATATAAGAGGTGACAAAATATTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGTAAGACAGCACTCAGTATATAAGAGGTGACAAAATATTTGTT  600

seq1  GAATAAACGAGTGGGTAAAATAATTTCCATTTTTCCACTAGTGTTCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACGAGTGGGTAAAATAATTTCCATTTTTCCACTAGTGTTCAACA  650

seq1  AAGTTACATCTGACTATTTAAAGGCTAATGGCTTTAATCTTTCTTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACATCTGACTATTTAAAGGCTAATGGCTTTAATCTTTCTTTTGTT  700

seq1  GCATTTATACATTTTATTTATATTATTATACTTAAGAAATAATATATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATACATTTTATTTATATTATTATACTTAAGAAATAATATATCCT  750

seq1  GATTATTAGTTTATATGGTCTCTTCCTTTACAGTTGGACACAGAATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTAGTTTATATGGTCTCTTCCTTTACAGTTGGACACAGAATATTT  800

seq1  TCTTTGGTATCTTCAATACCAGAAAACAGAAAATACTCAAGAATTTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTATCTTCAATACCAGAAAACAGAAAATACTCAAGAATTTATGT  850

seq1  TTAATTGATTTGCTTAATCTTGAATTCTGTACTCTTCAGCTTTTATAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGATTTGCTTAATCTTGAATTCTGTACTCTTCAGCTTTTATAGCC  900

seq1  GCTGCCATCAATTTATCAAGACCTGACATCTGCAAACCTTGCCCTTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATCAATTTATCAAGACCTGACATCTGCAAACCTTGCCCTTATTT  950

seq1  TTCATCCAAAACTGAA-TTCACTCAACAAATATCTGAACATCTACCACAC  999
      ||||||| |||||||| |||||||||| |||||||||||||||| |||||
seq2  TTCATCC-AAACTGAATTTCACTCAAC-AATATCTGAACATCTA-CACAC  997

seq1  GCCACAGGCTACAAATAGACAAAAAAAGTCTCTGCCCTCAAGGGCCTTAC  1049
      | ||||||||||  ||||||    ||||||||||||||| |||| |||||
seq2  G-CACAGGCTAC--ATAGAC----AAAGTCTCTGCCCTC-AGGGTCTTAC  1039

seq1  TTACTACCTGACACAG-ACAGACTGTGTGTTTGGGGACATGGATG-TCTG  1097
       ||||| ||||||||| |||||||||||||||||| |||| |||| ||||
seq2  -TACTA-CTGACACAGAACAGACTGTGTGTTTGGGAACAT-GATGTTCTG  1086

seq1  GG  1099
      ||
seq2  GG  1088

seq1: chr12_102146975_102147678
seq2: B6Ng01-318M14.g_68_773 (reverse)

seq1  TCCTGTCCCCCC--ACCCCACTTCAAGGTCAGTCTAAAGCTGGAAGGATG  48
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCCCCCCACCCCCACTTCAAGGTCAGTCTAAAGCTGGAAGGATG  50

seq1  AGGAAGAGAAACTGCTGCAGGAGCATTCGGGTACCTCAGTTTCAGGTTGG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAAACTGCTGCAGGAGCATTCGGGTACCTCAGTTTCAGGTTGG  100

seq1  GACCGCCAGTCTCACTTCCTGTCCCTGTTCTTTTGGTTTGGGACCTTCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCCAGTCTCACTTCCTGTCCCTGTTCTTTTGGTTTGGGACCTTCTG  150

seq1  TCCCTCCCTTCCCTAGCCCACTCCTCAGAGGTGGCGATACAGGTGAGGCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTTCCCTAGCCCACTCCTCAGAGGTGGCGATACAGGTGAGGCT  200

seq1  GGAGTTGGCCCATTCTGGCTCCTGAGGGCAGAAGGGTGAACTGTGCCAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGCCCATTCTGGCTCCTGAGGGCAGAAGGGTGAACTGTGCCAAC  250

seq1  CAGTTGTTAAAGATGGCCCTTACAGAAGGTAAATGTATCAAGCTATGATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTAAAGATGGCCCTTACAGAAGGTAAATGTATCAAGCTATGATT  300

seq1  AAACAATGTAATAAAGATCACAAAAAGTCAAAATCCATCCACTTCCTAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTAATAAAGATCACAAAAAGTCAAAATCCATCCACTTCCTAAT  350

seq1  TTACTAGTTCTATGCCTTAGAGGTTTACACATTTTATGGTATGTATAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGTTCTATGCCTTAGAGGTTTACACATTTTATGGTATGTATAGTG  400

seq1  GGTGTATTTTGCAGCGTGTACGGGGTCACTGCACACCCCCTTCCCTCCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATTTTGCAGCGTGTACGGGGTCACTGCACACCCCCTTCCCTCCTC  450

seq1  ACCCATGTTCTATTGCACCGTGCAGGCAGCTCGAAATCAGCCATATTTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTTCTATTGCACCGTGCAGGCAGCTCGAAATCAGCCATATTTAC  500

seq1  ACCACAGAAAGGGGCATGCTCCTCTCGTGGCTGGACTCGGCTTCTGATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAAAGGGGCATGCTCCTCTCGTGGCTGGACTCGGCTTCTGATTT  550

seq1  TGTTTTGCTTTGAGACAAGGTTTCACCGGTGTAGTTCCGGGAGGCTTAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCTTTGAGACAAGGTTTCACCGGTGTAGTTCCGGGAGGCTTAAG  600

seq1  ACTCAAGGGTCTCTCATCCCAGCCTCTTGCCGGTTCAACATTTGTTTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGGTCTCTCATCCCAGCCTCTTGCCGGTTCAACATTTGTTTTTG  650

seq1  AGTGCTTGACTTATGAAATCAATGGAGACAGTGGTATGTCTTGTGTGAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGACTTATGAAATCAATGGAGACAGTGGTATGTCTTGTGTGAGT  700

seq1  GAATTC  704
      ||||||
seq2  GAATTC  706