BAC Information

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BAC

Clone NameB6Ng01-318P10
Chromosome12 (Build37)
Map Location 113,736,595 - 113,884,005
singlet/doubletdoublet
Overlap geneA530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1
Upstream geneEif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik
Downstream geneAkt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318P10.bB6Ng01-318P10.g
ACCGA108717GA108718
length1,0491,138
definitionB6Ng01-318P10.b B6Ng01-318P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,882,944 - 113,884,005)(113,736,595 - 113,737,699)
sequence
gaattctctcctactgtatgttcttgggacctgactcatgtccaggcttg
catagactgcactttaaccagctgaggcattttctgggccgtgtttgcat
tgttattgctgttttaagacatctcaccataaagcccatgcctttccctt
ctgagtgctggcgtcaaaaaacaagccacgacgccaggccatgtctagac
tggggggcgtggggggaggcacactctttgcagctcagtcctgtcccttc
acgcatcgcccctgcgtctcagcacttgagtttgcattcccagagtacag
agagggaaaggacaaatactggggctgcgtagggagtttgttttcccgca
cattccaaaggcgcagcggcaccgctcaaagttatacggccgcaaactgc
gccaagctacggtacactgcgttacacctgccccagaaagccatcactgc
aaggcaatgctcagcaacatccatccgctacaaaggccacttgcgagggc
tcagggcagtctacgccatcacgcccactcgaacccagtccccgcgtcgg
tcccgcgctaggctagtccgctcggcagcactcgggtccgactcggattt
ctccgggagccgcctgaagcagcatccaccgtgagcgctcgggacgctcc
cgcggtctcccgctgccctgcgcggcgtagcgcgctctacccacggaagt
ccacactcaccgaagacctcgcgtgagtagcgctcggcgaacacaccgtg
gctcagctctttcaggcccacgtggactttgagttggagcggggctgcgt
ctgcgaacgggcagctccgcttgggcatggtagcgggtaccagacacagc
cttcagcagcgcgcagcgcgccgcgcgccgagcacacgtcacggcgccct
cggaccgcggcggaggcccgagccgacgagggcgcggcgcccataggccg
gagaaaggctgggggctcgcctcaacggcccgctgcgcgggatagccgga
gtgacgtcggggcggacttacgcagtacgcgaggatagctgaggaggca
gaattcctatgttcctgcccagtcctctgtcttgggagccatagcctgga
tgttaccgtacatagctctttgagggtgcgtttgggaaggcgagccccaa
tctcctgctgctttgagggctgggcccagcttttgccacaccatcacgag
acagggtgcctctctcgctccagttcatggagcccatgagaattgtcctt
ttctctgagcccaggtctgaattcctccacttcatgcgcagtgatccgtc
aggggtcactgtggtgtgggaacagagtccagctctgaacacagttgctc
tcagaacaggagtgtggcaccgagggtcttcttccggggccacacacagg
cccaaagccatcgggcctgcccaccagctgcaggccctgtgagtgtcctg
aacatctgtgtacactgttctgtcactcatgttgaaaggcaaggggaagc
gagcaccagcgtgtagcaaccgcttcagagcatcccagacccgcctggag
ggggagccctgagctcagcggggaggcccagtcggacaccaggaggatcc
gcaagggggaccctgtaccaccctggaacaaacaaatgagcagggtttgg
gagccaggataagactgggggtagtcctaaggtacccctctacttaggtg
ggcagacagggaccccatattaaaatacctgcagcctcttcaacctcggg
atgattgcaaaataaacagagggagacactgtggaagaatccctccgggt
ccaagcatgttcatctaggtgccagagcacactcccacccctccactcac
tcgcccccacagcctacaggtgccttgcagctgtcatccacaagaagtca
tgggacccaccatgcacccagggaccacatcctccccagcaagacatgcc
caagctttcttcagatcactgaaggtgcaaatcctgccccttctctgggc
ctttcccggtgcccttgcacagttgttcctccagatgccagaatttgaga
gccacagttaggtgttgagcccagttgcagccaaaacctttcttcttaga
acggcgtcttagagttggtcttaaaaagaacagttctgggaaagccactc
tccaccaggactgtctattccacccaattgttactgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113882944_113884005
seq2: B6Ng01-318P10.b_50_1098 (reverse)

seq1  TGCCTCCCTCAGCCTATCCCTCGCCGTTAACTGCGTAAGTCCCGCCCCCG  50
      ||||| |||||| |||| ||||| |||  |||||||||||||   |||||
seq2  TGCCT-CCTCAG-CTAT-CCTCG-CGT--ACTGCGTAAGTCC--GCCCCG  42

seq1  ACGTCACTCCGGCCTATCCCGCGCAGCGGGGCCCGTTTGAGGCGAGCCCC  100
      |||||||||||| |||||||||||||||||  ||| ||||||||||||||
seq2  ACGTCACTCCGG-CTATCCCGCGCAGCGGG--CCG-TTGAGGCGAGCCCC  88

seq1  CAGCCTTTCTCCGGCCTATTGGGCGCCGCGCCCTCGTCGGCTCGGGCCTC  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCCTTTCTCCGGCCTA-TGGGCGCCGCGCCCTCGTCGGCTCGGGCCTC  137

seq1  CGCCGCGGTCCGAGGGCGCCGTGACGTGTGCTCGGCGCGCGGCGCGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCGGTCCGAGGGCGCCGTGACGTGTGCTCGGCGCGCGGCGCGCTGC  187

seq1  GCGCTGCTGAAGGCTGTGTCTGGTACCCGCTACCATGCCCAAGCGGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGCTGAAGGCTGTGTCTGGTACCCGCTACCATGCCCAAGCGGAGCT  237

seq1  GCCCGTTCGCAGACGCAGCCCCGCTCCAACTCAAAGTCCACGTGGGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTTCGCAGACGCAGCCCCGCTCCAACTCAAAGTCCACGTGGGCCTG  287

seq1  AAAGAGCTGAGCCACGGTGTGTTCGCCGAGCGCTACTCACGCGAGGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTGAGCCACGGTGTGTTCGCCGAGCGCTACTCACGCGAGGTCTT  337

seq1  CGGTGAGTGTGGACTTCCGTGGGTAGAGCGCGCTACGCCGCGCAGGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGTGTGGACTTCCGTGGGTAGAGCGCGCTACGCCGCGCAGGGCAG  387

seq1  CGGGAGACCGCGGGAGCGTCCCGAGCGCTCACGGTGGATGCTGCTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGACCGCGGGAGCGTCCCGAGCGCTCACGGTGGATGCTGCTTCAGG  437

seq1  CGGCTCCCGGAGAAATCCGAGTCGGACCCGAGTGCTGCCGAGCGGACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCCCGGAGAAATCCGAGTCGGACCCGAGTGCTGCCGAGCGGACTAG  487

seq1  CCTAGCGCGGGACCGACGCGGGGACTGGGTTCGAGTGGGCGTGATGGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCGCGGGACCGACGCGGGGACTGGGTTCGAGTGGGCGTGATGGCGT  537

seq1  AGACTGCCCTGAGCCCTCGCAAGTGGCCTTTGTAGCGGATGGATGTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCCTGAGCCCTCGCAAGTGGCCTTTGTAGCGGATGGATGTTGCT  587

seq1  GAGCATTGCCTTGCAGTGATGGCTTTCTGGGGCAGGTGTAACGCAGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTGCCTTGCAGTGATGGCTTTCTGGGGCAGGTGTAACGCAGTGTA  637

seq1  CCGTAGCTTGGCGCAGTTTGCGGCCGTATAACTTTGAGCGGTGCCGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGCTTGGCGCAGTTTGCGGCCGTATAACTTTGAGCGGTGCCGCTGC  687

seq1  GCCTTTGGAATGTGCGGGAAAACAAACTCCCTACGCAGCCCCAGTATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGAATGTGCGGGAAAACAAACTCCCTACGCAGCCCCAGTATTTG  737

seq1  TCCTTTCCCTCTCTGTACTCTGGGAATGCAAACTCAAGTGCTGAGACGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCCTCTCTGTACTCTGGGAATGCAAACTCAAGTGCTGAGACGCA  787

seq1  GGGGCGATGCGTGAAGGGACAGGACTGAGCTGCAAAGAGTGTGCCTCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGATGCGTGAAGGGACAGGACTGAGCTGCAAAGAGTGTGCCTCCCC  837

seq1  CCACGCCCCCCAGTCTAGACATGGCCTGGCGTCGTGGCTTGTTTTTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCCCCAGTCTAGACATGGCCTGGCGTCGTGGCTTGTTTTTTGAC  887

seq1  GCCAGCACTCAGAAGGGAAAGGCATGGGCTTTATGGTGAGATGTCTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACTCAGAAGGGAAAGGCATGGGCTTTATGGTGAGATGTCTTAAA  937

seq1  ACAGCAATAACAATGCAAACACGGCCCAGAAAATGCCTCAGCTGGTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATAACAATGCAAACACGGCCCAGAAAATGCCTCAGCTGGTTAAA  987

seq1  GTGCAGTCTATGCAAGCCTGGACATGAGTCAGGTCCCAAGAACATACAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTCTATGCAAGCCTGGACATGAGTCAGGTCCCAAGAACATACAGT  1037

seq1  AGGAGAGAATTC  1062
      ||||||||||||
seq2  AGGAGAGAATTC  1049

seq1: chr12_113736595_113737699
seq2: B6Ng01-318P10.g_70_1207

seq1  GAATTCCTATGTTCCTGCCCAGTCCTCTGTCTTGGGAGCCATAGCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGTTCCTGCCCAGTCCTCTGTCTTGGGAGCCATAGCCTGGA  50

seq1  TGTTACCGTACATAGCTCTTTGAGGGTGCGTTTGGGAAGGCGAGCCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCGTACATAGCTCTTTGAGGGTGCGTTTGGGAAGGCGAGCCCCAA  100

seq1  TCTCCTGCTGCTTTGAGGGCTGGGCCCAGCTTTTGCCACACCATCACGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCTGCTTTGAGGGCTGGGCCCAGCTTTTGCCACACCATCACGAG  150

seq1  ACAGGGTGCCTCTCTCGCTCCAGTTCATGGAGCCCATGAGAATTGTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGCCTCTCTCGCTCCAGTTCATGGAGCCCATGAGAATTGTCCTT  200

seq1  TTCTCTGAGCCCAGGTCTGAATTCCTCCACTTCATGCGCAGTGATCCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAGCCCAGGTCTGAATTCCTCCACTTCATGCGCAGTGATCCGTC  250

seq1  AGGGGTCACTGTGGTGTGGGAACAGAGTCCAGCTCTGAACACAGTTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCACTGTGGTGTGGGAACAGAGTCCAGCTCTGAACACAGTTGCTC  300

seq1  TCAGAACAGGAGTGTGGCACCGAGGGTCTTCTTCCGGGGCCACACACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAGGAGTGTGGCACCGAGGGTCTTCTTCCGGGGCCACACACAGG  350

seq1  CCCAAAGCCATCGGGCCTGCCCACCAGCTGCAGGCCCTGTGAGTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCCATCGGGCCTGCCCACCAGCTGCAGGCCCTGTGAGTGTCCTG  400

seq1  AACATCTGTGTACACTGTTCTGTCACTCATGTTGAAAGGCAAGGGGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGTGTACACTGTTCTGTCACTCATGTTGAAAGGCAAGGGGAAGC  450

seq1  GAGCACCAGCGTGTAGCAACCGCTTCAGAGCATCCCAGACCCGCCTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCAGCGTGTAGCAACCGCTTCAGAGCATCCCAGACCCGCCTGGAG  500

seq1  GGGGAGCCCTGAGCTCAGCGGGGAGGCCCAGTCGGACACCAGGAGGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCCCTGAGCTCAGCGGGGAGGCCCAGTCGGACACCAGGAGGATCC  550

seq1  GCAAGGGGGACCCTGTACCACCCTGGAACAAACAAATGAGCAGGGTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGGGACCCTGTACCACCCTGGAACAAACAAATGAGCAGGGTTTGG  600

seq1  GAGCCAGGATAAGACTGGGGGTAGTCCTAAGGTACCCCTCTACTTAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGATAAGACTGGGGGTAGTCCTAAGGTACCCCTCTACTTAGGTG  650

seq1  GGCAGACAGGGACCCCATATTAAAATACCTGCAGCCTCTTCAACCTCGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACAGGGACCCCATATTAAAATACCTGCAGCCTCTTCAACCTCGGG  700

seq1  ATGATTGCAAAATAAACAGAGGGAGACACTGTGGAAGAATCCCTCCGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGCAAAATAAACAGAGGGAGACACTGTGGAAGAATCCCTCCGGGT  750

seq1  CCAAGCATGTTCATCTAGGTGCCAGAGCACACTCCCACCCCTCCACTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATGTTCATCTAGGTGCCAGAGCACACTCCCACCCCTCCACTCAC  800

seq1  TCGCCCCCACAGCCTACAGGTGCCTTGCAGCTGTCATCCACAAGAAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCCCACAGCCTACAGGTGCCTTGCAGCTGTCATCCACAAGAAGTCA  850

seq1  GGGGACCCACCATGCACCCA-GGACCACATCCTCCCCAGCAAGACATG-C  898
       ||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  TGGGACCCACCATGCACCCAGGGACCACATCCTCCCCAGCAAGACATGCC  900

seq1  CAAGCTT--CTCAGATCACTG-AGGTGCAA--TCTGCCCC-TCTCT-GGC  941
      |||||||   ||||||||||| ||||||||   ||||||| ||||| |||
seq2  CAAGCTTTCTTCAGATCACTGAAGGTGCAAATCCTGCCCCTTCTCTGGGC  950

seq1  CTT--CCGGTGCCC-TGCACAGTGGT--CTCCAGATG-CAGAATTTGAGA  985
      |||  ||||||||| |||||||| ||  ||||||||| ||||||||||||
seq2  CTTTCCCGGTGCCCTTGCACAGTTGTTCCTCCAGATGCCAGAATTTGAGA  1000

seq1  G-CACAG-TAGGTG-TGAGCCCAG-TGGAG-CAAAACCCTTCT--CTAGA  1028
      | ||||| |||||| ||||||||| || || ||||||| ||||   ||||
seq2  GCCACAGTTAGGTGTTGAGCCCAGTTGCAGCCAAAACCTTTCTTCTTAGA  1050

seq1  A-GGCGTC-TAGAAGTGGTCTAAAAAGGACCAG-TCT-GGAAAGCAACT-  1073
      | |||||| ||||  |||||| |||| || ||| ||| ||||||| ||| 
seq2  ACGGCGTCTTAGAGTTGGTCTTAAAAAGAACAGTTCTGGGAAAGCCACTC  1100

seq1  --CACCAGGACTGGCTAT--CACC--ATGGTTACTGTT  1105
        ||||||||||| ||||  ||||  || |||||||||
seq2  TCCACCAGGACTGTCTATTCCACCCAATTGTTACTGTT  1138