BAC Information

Click to search

BAC

Clone NameB6Ng01-319C04
Chromosome12 (Build37)
Map Location 39,870,002 - 40,017,341
singlet/doubletdoublet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319C04.bB6Ng01-319C04.g
ACCGA108845GA108846
length1,1421,139
definitionB6Ng01-319C04.b B6Ng01-319C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,016,206 - 40,017,341)(39,870,002 - 39,871,146)
sequence
gaattcaggagtgccatggctgtgtcagattcagaagacacttagctcct
acagtctttccactaccacgcctgcagtcttctctgagtcccaggaaaag
aaaaggcttgtgagagatgttatgtttagcatgaagcactccgtagttgc
tcattctctgtaccatctgtaggtcttaattaatttaaactaacaaattt
ctctgatgagagatgaaagttgcattcgactctgtgtttacagagcaatt
ttcaaagaccattttgatatgattgttcagaaaatctgtagtaggttctc
ctgggctataaaatcttaccatccatgagttcttgaccatctctacagta
ccagatatgagttcagtactatgaattaggtctaaaatccaatcagaaag
tagttggttacttaatagcctcacagcattcatgccactgaggcaacaat
gtgcatttcttgccacctatgagcatggaacaaatatatataacaagaca
ctaaccgataaagcagaaggaaaagagtagtgcccagtgaatcctttgac
ctttgattgtcaatttagcaggatgtatgagcacctaggagacaaacctc
taggcatacttctgaggggttgtctagaataggttaaactctgggtgtac
atgtgagacattacccactttgggttactctttgaacatgactgtgaagg
attgcagagaccagattatcttttaaacttacttctgggagatcaactag
attaggctagcctctgggcgtacctgtgagggattatgtagattggagta
acctcttggtacgcctgtgagtgatcatctttctagagctgagatggcat
gaatcactctaactgtaggtggcacattggctaggcctgtgctggcattc
ttccccctctgccttctgactgtggatgaaatgtgaacagttgctaaaag
ctaccattgctatgactttactgctatgttaactatgagtcaaaaaataa
accctttttctaagtcacttgtttttgttagggtatgttcttttgtatga
acagacaactaaaatactttagtactacataacaagttaactattcagct
gccttataaatggagcttggcttttcccttcctaattgcttg

gaattcttaaaaattgtggtaaggatgctgaattatagttctctagaatc
aatggcctctggtagggatgccggtagaagattgttttcttaaggagtta
gccaccaggactttgaccaagctttaggaagtttatgggcagcaccaatt
ggaattctgtttcatttttatttttctttttgtttgaggggacccatgtg
tgggggagaagacctgagaggactgaaaagtgagggtgctcagggttcat
catgtgaaattcccaagtaatcaataaaaatattatacaaatatatgtaa
ataaagttaaaagtttaaatataagttccatcaatagcatggttgccttt
ttccataaattagtaaggatcaattacagatggatttattaattactcaa
aacgatccatataataagtaaatatgtttacagtaagtatgcatgtttat
agatgaggaaatttatggtcacaaagtttacttgcatttgtccactgtca
cacaaatactctgaaaaatacctagttaactaggtggatctttactaagt
atggtagcttacagtacacacaaatcatttcaactaattaccatacttca
aatcacatcaaagaaacattagtctttcatatttctttttttttccattt
tttattattctttaaagcatcttcgacttgccggtgatgtctataggtac
tacagctatagttatcctccacctgtgaacattctagtgacaggaagttt
tcctttctttcaaatggtagttgcatggatggttctggaaatgggttctc
ttagcatcatacctgggacatgatttatactagcagtagaattgcttcct
gtgtttgcattgagtagaataaaatgttaattctcttacatcatggttag
tgtttttaggagggttaataagaaagatctattggtgttatagccactgc
tatcacatgaatttattatctagtataaaactacattaaacatgatatct
ggagatagcactttgtattttcttcagcaataatgacaaaaaaaaaaaat
tcagagaaaaggggccaaagaaagacaggaggggagtggaatgaagctaa
tccataggttgctgaaccacatttggaattctcctttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40016206_40017341
seq2: B6Ng01-319C04.b_46_1187 (reverse)

seq1  CAAGCAATTAGG-AGAGAAAAAACCAGCT-CATTTATAA-GCAGCTGAAT  47
      |||||||||||| || |||||  | |||| ||||||||| ||||||||||
seq2  CAAGCAATTAGGAAGGGAAAAGCCAAGCTCCATTTATAAGGCAGCTGAAT  50

seq1  AGTTTACTTG-TATGTAGTACTAAAGTATTTTAGTTGTCTTGTTCATACA  96
      |||| ||||| |||||||||||||||||||||||||||| ||||||||||
seq2  AGTTAACTTGTTATGTAGTACTAAAGTATTTTAGTTGTC-TGTTCATACA  99

seq1  AA--GACATACCCTAACAAAAACAAGTTGACTTAGAAAA--GGTTTA-TT  141
      ||   ||||||||||||||||||||| ||||||||||||  |||||| ||
seq2  AAAGAACATACCCTAACAAAAACAAG-TGACTTAGAAAAAGGGTTTATTT  148

seq1  TTTGACTCATAGTTTAACATAGCAGTAAAGTCATAGCAATGGTAGCTTTT  191
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCATAG-TTAACATAGCAGTAAAGTCATAGCAATGGTAGCTTTT  197

seq1  AGCAACTGTTCACATTTCATCCACAGTCAGAAGGCAGAGGGGGAAGAATG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGTTCACATTTCATCCACAGTCAGAAGGCAGAGGGGGAAGAATG  247

seq1  CCAGCACAGGCCTAGCCAATGTGCCACCTACAGTTAGAGTGATTCATGCC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAGGCCTAGCCAATGTGCCACCTACAGTTAGAGTGATTCATGCC  297

seq1  ATCTCAGCTCTAGAAAGATGATCACTCACAGGCGTACCAAGAGGTTACTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCTCTAGAAAGATGATCACTCACAGGCGTACCAAGAGGTTACTC  347

seq1  CAATCTACATAATCCCTCACAGGTACGCCCAGAGGCTAGCCTAATCTAGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTACATAATCCCTCACAGGTACGCCCAGAGGCTAGCCTAATCTAGT  397

seq1  TGATCTCCCAGAAGTAAGTTTAAAAGATAATCTGGTCTCTGCAATCCTTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCCCAGAAGTAAGTTTAAAAGATAATCTGGTCTCTGCAATCCTTC  447

seq1  ACAGTCATGTTCAAAGAGTAACCCAAAGTGGGTAATGTCTCACATGTACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATGTTCAAAGAGTAACCCAAAGTGGGTAATGTCTCACATGTACA  497

seq1  CCCAGAGTTTAACCTATTCTAGACAACCCCTCAGAAGTATGCCTAGAGGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTTTAACCTATTCTAGACAACCCCTCAGAAGTATGCCTAGAGGT  547

seq1  TTGTCTCCTAGGTGCTCATACATCCTGCTAAATTGACAATCAAAGGTCAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCTAGGTGCTCATACATCCTGCTAAATTGACAATCAAAGGTCAA  597

seq1  AGGATTCACTGGGCACTACTCTTTTCCTTCTGCTTTATCGGTTAGTGTCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCACTGGGCACTACTCTTTTCCTTCTGCTTTATCGGTTAGTGTCT  647

seq1  TGTTATATATATTTGTTCCATGCTCATAGGTGGCAAGAAATGCACATTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATATATTTGTTCCATGCTCATAGGTGGCAAGAAATGCACATTGT  697

seq1  TGCCTCAGTGGCATGAATGCTGTGAGGCTATTAAGTAACCAACTACTTTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGTGGCATGAATGCTGTGAGGCTATTAAGTAACCAACTACTTTC  747

seq1  TGATTGGATTTTAGACCTAATTCATAGTACTGAACTCATATCTGGTACTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGATTTTAGACCTAATTCATAGTACTGAACTCATATCTGGTACTG  797

seq1  TAGAGATGGTCAAGAACTCATGGATGGTAAGATTTTATAGCCCAGGAGAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGGTCAAGAACTCATGGATGGTAAGATTTTATAGCCCAGGAGAA  847

seq1  CCTACTACAGATTTTCTGAACAATCATATCAAAATGGTCTTTGAAAATTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTACAGATTTTCTGAACAATCATATCAAAATGGTCTTTGAAAATTG  897

seq1  CTCTGTAAACACAGAGTCGAATGCAACTTTCATCTCTCATCAGAGAAATT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAAACACAGAGTCGAATGCAACTTTCATCTCTCATCAGAGAAATT  947

seq1  TGTTAGTTTAAATTAATTAAGACCTACAGATGGTACAGAGAATGAGCAAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTTAAATTAATTAAGACCTACAGATGGTACAGAGAATGAGCAAC  997

seq1  TACGGAGTGCTTCATGCTAAACATAACATCTCTCACAAGCCTTTTCTTTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGAGTGCTTCATGCTAAACATAACATCTCTCACAAGCCTTTTCTTTT  1047

seq1  CCTGGGACTCAGAGAAGACTGCAGGCGTGGTAGTGGAAAGACTGTAGGAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACTCAGAGAAGACTGCAGGCGTGGTAGTGGAAAGACTGTAGGAG  1097

seq1  CTAAGTGTCTTCTGAATCTGACACAGCCATGGCACTCCTGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTCTTCTGAATCTGACACAGCCATGGCACTCCTGAATTC  1142


seq1: chr12_39870002_39871146
seq2: B6Ng01-319C04.g_66_1204

seq1  GAATTCTTAAAAATTGTGGTAAGGATGCTGAATTATAGTTCTCTAGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAAATTGTGGTAAGGATGCTGAATTATAGTTCTCTAGAATC  50

seq1  AATGGCCTCTGGTAGGGATGCCGGTAGAAGATTGTTTTCTTAAGGAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTCTGGTAGGGATGCCGGTAGAAGATTGTTTTCTTAAGGAGTTA  100

seq1  GCCACCAGGACTTTGACCAAGCTTTAGGAAGTTTATGGGCAGCACCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGGACTTTGACCAAGCTTTAGGAAGTTTATGGGCAGCACCAATT  150

seq1  GGAATTCTGTTTCATTTTTATTTTTCTTTTTGTTTGAGGGGACCCATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTGTTTCATTTTTATTTTTCTTTTTGTTTGAGGGGACCCATGTG  200

seq1  TGGGGGAGAAGACCTGAGAGGACTGAAAAGTGAGGGTGCTCAGGGTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGAAGACCTGAGAGGACTGAAAAGTGAGGGTGCTCAGGGTTCAT  250

seq1  CATGTGAAATTCCCAAGTAATCAATAAAAATATTATACAAATATATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAAATTCCCAAGTAATCAATAAAAATATTATACAAATATATGTAA  300

seq1  ATAAAGTTAAAAGTTTAAATATAAGTTCCATCAATAGCATGGTTGCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTAAAAGTTTAAATATAAGTTCCATCAATAGCATGGTTGCCTTT  350

seq1  TTCCATAAATTAGTAAGGATCAATTACAGATGGATTTATTAATTACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAATTAGTAAGGATCAATTACAGATGGATTTATTAATTACTCAA  400

seq1  AACGATCCATATAATAAGTAAATATGTTTACAGTAAGTATGCATGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCCATATAATAAGTAAATATGTTTACAGTAAGTATGCATGTTTAT  450

seq1  AGATGAGGAAATTTATGGTCACAAAGTTTACTTGCATTTGTCCACTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGAAATTTATGGTCACAAAGTTTACTTGCATTTGTCCACTGTCA  500

seq1  CACAAATACTCTGAAAAATACCTAGTTAACTAGGTGGATCTTTACTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATACTCTGAAAAATACCTAGTTAACTAGGTGGATCTTTACTAAGT  550

seq1  ATGGTAGCTTACAGTACACACAAATCATTTCAACTAATTACCATACTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCTTACAGTACACACAAATCATTTCAACTAATTACCATACTTCA  600

seq1  AATCACATCAAAGAAACATTAGTCTTTCATATTTCTTTTTTTTTCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATCAAAGAAACATTAGTCTTTCATATTTCTTTTTTTTTCCATTT  650

seq1  TTTATTATTCTTTAAAGCATCTTCGACTTGCCGGTGATGTCTATAGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTCTTTAAAGCATCTTCGACTTGCCGGTGATGTCTATAGGTAC  700

seq1  TACAGCTATAGTTATCCTCCACCTGTGAACATTCTAGTGACAGGAAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTATAGTTATCCTCCACCTGTGAACATTCTAGTGACAGGAAGTTT  750

seq1  TCCTTTCTTTCAAATGGTAGTTGCATGGATGGTTCTGGAAATGGGTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTTCAAATGGTAGTTGCATGGATGGTTCTGGAAATGGGTTCTC  800

seq1  TTAGCATCATACCTGGGACATGATTTATACTAGCAGTAGAATTGCTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCATACCTGGGACATGATTTATACTAGCAGTAGAATTGCTTCCT  850

seq1  GTGTTTGCATTGAGTAGAATAAAATGTTAATTCTCTTACATCATGGTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCATTGAGTAGAATAAAATGTTAATTCTCTTACATCATGGTTAG  900

seq1  TGTTTTTAGGAGGGTTAATAAGAAAGATCTATTGGTGTTATAGCCACTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAGGAGGGTTAATAAGAAAGATCTATTGGTGTTATAGCCACTGC  950

seq1  TAATCACATGAATTTATTATCTAGTATAAAACTACATTAAACATGATATC  1000
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ATCACATGAATTTATTATCTAGTATAAAACTACATTAAACATGATATC  999

seq1  TGGAGATAGCACTTTGTTAATTTTTCTTCAGCAAAATAATGACAAAAAAA  1050
      |||||||||||||||||    |||||||||||  |||||||||  |||||
seq2  TGGAGATAGCACTTTGT---ATTTTCTTCAGC--AATAATGAC--AAAAA  1042

seq1  AAAAAAATCCAAGAAGAAAAAGGGGCAAAG-AAGACAAGGAGGGGAGTGA  1099
      |||||||| ||   |||||| ||| ||||| ||||| |||||||||||| 
seq2  AAAAAAATTCA--GAGAAAAGGGGCCAAAGAAAGAC-AGGAGGGGAGTGG  1089

seq1  GATGAAGCTAAT-CATAGTTTGCTGACCACCATTTG---ATCTCCTTTGT  1145
       ||||||||||| ||||| ||||||| |  ||||||    ||||||||||
seq2  AATGAAGCTAATCCATAGGTTGCTGAACCACATTTGGAATTCTCCTTTGT  1139


| Home | SequenceCutter | Blast | Download |