BAC Information

Click to search

BAC

Clone NameB6Ng01-319C16
Chromosome12 (Build37)
Map Location 60,335,397 - 60,497,652
singlet/doubletdoublet
Overlap geneLOC665628, LOC238199, LOC665639
Upstream geneClec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33
Downstream geneLOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319C16.bB6Ng01-319C16.g
ACCGA108867GA108868
length1821,201
definitionB6Ng01-319C16.b B6Ng01-319C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,497,471 - 60,497,652)(60,335,397 - 60,336,593)
sequence
ttcctctatcaacacagttcccaacacacacacacacacacacacatctc
taggaaatataagtgtaaacttagtgtttagatcttcactgactccttgt
tcctgtggacaccctcatcgttcacattgggttgatgatattgctttaca
ctctccccgcccccgcccccgccctcgccccc

gaattccatatcaggcaacacacagccaccgtattctcctaagaaccaga
gaggaaacagaaaccaaggaacaaacactcacacaacaaattcaagatca
gatatcagcacctagaatgataatctcaaggccagatgcctagatatcag
catacaaagacaatcaataacagccaggacagtgtctccattaagtccct
agtattgcaacacagctgaggtacaagacaatggcctaaaccagccttta
tcaatatgattgataaagaataaatgaaaaaatctcttaaagaaatctct
aaaaactcagacagtggaaagaaatgaataaaatagtttaagaccagatg
aatggaagagaaaataaacagtatcaaagaacttcttcagcctggagggc
aaaaactttttaccaggtacgtctagccatcctacagaacatcaagagat
aatcatcacatttctcaaacttgtgccagcttccgagaacatatccacat
ggatttttatgaaagctcatcttcagcctcattgccaatttgcttggaag
cctcttcccccacatatctactgcaatcttcattcatgctttcacttaaa
tgccacctgtactaacttatccagaatatctatcccctccccttgacaca
gcccatgctttgagtgtctgaggtgctggagaccaaatccaggagcttgt
acatcctaggcaagctctctacctctggctatatcccccgaacctcgtct
cctttattcactcatttttcttttgcagttgtcatcacctagaacgccat
gtattttgccaatttatcattccccagtttcactagaatacaggcaagca
gaggtcataactttgtatttgttgattgctatatccttaatgtcaagagt
ccttgatgtgtaataagcactcaaatatttgcttaatgatgaaagaactt
gggcaatgttgcacaagtacatggttaaaatactattattgacacacaca
caataaattgagttatcaactactgatatgtggctttgtgggggggaggg
aagttaatagcattgaaaccgaccattgatgagaatacaaatcaactata
atctaaaataaaccttccataagattgtaaggacagtggctataaggtaa
atatgaattcttggacacgtagaggccagcttagagacctccttaggcag
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60497471_60497652
seq2: B6Ng01-319C16.b_52_233 (reverse)

seq1  GGGGGCGAGGGCGGGGGCGGGGGCGGGGAGAGTGTAAAGCAATATCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCGAGGGCGGGGGCGGGGGCGGGGAGAGTGTAAAGCAATATCATCA  50

seq1  ACCCAATGTGAACGATGAGGGTGTCCACAGGAACAAGGAGTCAGTGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATGTGAACGATGAGGGTGTCCACAGGAACAAGGAGTCAGTGAAGA  100

seq1  TCTAAACACTAAGTTTACACTTATATTTCCTAGAGATGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACACTAAGTTTACACTTATATTTCCTAGAGATGTGTGTGTGTGTG  150

seq1  TGTGTGTGTTGGGAACTGTGTTGATAGAGGAA  182
      ||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTGGGAACTGTGTTGATAGAGGAA  182


seq1: chr12_60335397_60336593
seq2: B6Ng01-319C16.g_66_1266

seq1  GAATTCCATATCAGGCAACACACAGCCACCGTATTCTCCTAAGAACCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATCAGGCAACACACAGCCACCGTATTCTCCTAAGAACCAGA  50

seq1  GAGGAAACAGAAACCAAGGAACAAACACTCACACAACAAATTCAAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAGAAACCAAGGAACAAACACTCACACAACAAATTCAAGATCA  100

seq1  GATATCAGCACCTAGAATGATAATCTCAAGGCCAGATGCCTAGATATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAGCACCTAGAATGATAATCTCAAGGCCAGATGCCTAGATATCAG  150

seq1  CATACAAAGACAATCAATAACAGCCAGGACAGTGTCTCCATTAAGTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAAGACAATCAATAACAGCCAGGACAGTGTCTCCATTAAGTCCCT  200

seq1  AGTATTGCAACACAGCTGAGGTACAAGACAATGGCCTAAACCAGCCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGCAACACAGCTGAGGTACAAGACAATGGCCTAAACCAGCCTTTA  250

seq1  TCAATATGATTGATAAAGAATAAATGAAAAAATCTCTTAAAGAAATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGATTGATAAAGAATAAATGAAAAAATCTCTTAAAGAAATCTCT  300

seq1  AAAAACTCAGACAGTGGAAAGAAATGAATAAAATAGTTTAAGACCAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCAGACAGTGGAAAGAAATGAATAAAATAGTTTAAGACCAGATG  350

seq1  AATGGAAGAGAAAATAAACAGTATCAAAGAACTTCTTCAGCCTGGAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGAGAAAATAAACAGTATCAAAGAACTTCTTCAGCCTGGAGGGC  400

seq1  AAAAACTTTTTACCAGGTACGTCTAGCCATCCTACAGAACATCAAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTTTACCAGGTACGTCTAGCCATCCTACAGAACATCAAGAGAT  450

seq1  AATCATCACATTTCTCAAACTTGTGCCAGCTTCCGAGAACATATCCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCACATTTCTCAAACTTGTGCCAGCTTCCGAGAACATATCCACAT  500

seq1  GGATTTTTATGAAAGCTCATCTTCAGCCTCATTGCCAATTTGCTTGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTATGAAAGCTCATCTTCAGCCTCATTGCCAATTTGCTTGGAAG  550

seq1  CCTCTTCCCCCACATATCTACTGCAATCTTCATTCATGCTTTCACTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCCCCACATATCTACTGCAATCTTCATTCATGCTTTCACTTAAA  600

seq1  TGCCACCTGTACTAACTTATCCAGAATATCTATCCCCTCCCCTTGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTGTACTAACTTATCCAGAATATCTATCCCCTCCCCTTGACACA  650

seq1  GCCCATGCTTTGAGTGTCTGAGGTGCTGGAGACCAAATCCAGGAGCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGCTTTGAGTGTCTGAGGTGCTGGAGACCAAATCCAGGAGCTTGT  700

seq1  ACATCCTAGGCAAGCTCTCTACCTCTGGCTATATCCCCCGAACCTCGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTAGGCAAGCTCTCTACCTCTGGCTATATCCCCCGAACCTCGTCT  750

seq1  CCTTTATTCACTCATTTTTCTTTTGCAGTTGTCATCACCTAGAACGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTCACTCATTTTTCTTTTGCAGTTGTCATCACCTAGAACGCCAT  800

seq1  GTATTTTGCCAATTTATCATTCCCCAGTTTCACTAGAATACAGGCAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGCCAATTTATCATTCCCCAGTTTCACTAGAATACAGGCAAGCA  850

seq1  GAGGTCATAACTTTGTATTTGTTGATTGCTATATCCTTAATGTCAAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATAACTTTGTATTTGTTGATTGCTATATCCTTAATGTCAAGAGT  900

seq1  CCTTGATGTGTAATAAGCACTCAAATATTTGCTTAATGATGAAAGAACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATGTGTAATAAGCACTCAAATATTTGCTTAATGATGAAAGAACTT  950

seq1  -GGCAATGTTGCACAAAGTACATGGTTAAAATACTATTATTGACACACAC  999
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGCAATGTTGCAC-AAGTACATGGTTAAAATACTATTATTGACACACAC  999

seq1  ACAATAAATTGAG-TATCAACTACTGATATGTGGCTTTTGTGGGGGGAGG  1048
      ||||||||||||| ||||||||||||||||||||||||   |||||||||
seq2  ACAATAAATTGAGTTATCAACTACTGATATGTGGCTTTGTGGGGGGGAGG  1049

seq1  GAAGGTAATAAGCA-TGAAACAGA-CATTGATGAG-ATACAAATCAACTA  1095
      |||| |||| |||| |||||| || |||||||||| ||||||||||||||
seq2  GAAGTTAAT-AGCATTGAAACCGACCATTGATGAGAATACAAATCAACTA  1098

seq1  TAATCTAAAATAAACTTTCACATAAGAATTGTAA-GAAAGT-GCTATAAG  1143
      ||||||||||||||| ||| |||||| ||||||| || ||| ||||||||
seq2  TAATCTAAAATAAACCTTC-CATAAG-ATTGTAAGGACAGTGGCTATAAG  1146

seq1  GGTTAAATAATGATTTTCTTGGAC-TGAAGAGG-CAGCTAGGAG---CAC  1188
      |  ||||| ||||  |||||||||  | ||||| |||||  |||     |
seq2  G--TAAAT-ATGA-ATTCTTGGACACGTAGAGGCCAGCTTAGAGACCTCC  1192

seq1  TTAGGCAGT  1197
      |||||||||
seq2  TTAGGCAGT  1201


| Home | SequenceCutter | Blast | Download |