BAC Information

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BAC

Clone NameB6Ng01-319I21
Chromosome12 (Build37)
Map Location 27,050,605 - 27,051,766
singlet/doubletsinglet
Overlap geneRnf144
Upstream geneLOC100042973, LOC100042974, LOC668726
Downstream geneRsad2, Tyki, LOC668731, 1700020D12Rik, Sox11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319I21.bB6Ng01-319I21.g
ACCGA109153GA109154
length1,1441,153
definitionB6Ng01-319I21.b B6Ng01-319I21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacttttatccaccaataccacacagttcctgggcctcttggat
gctgctgctgggcttctgtcacatcatcattgggtgaggactttggctgg
actaaccagctgtccatataacatgtgtcctgcaaaaatgctttcccata
tctgcagggaggtgctgctgggaggctgggcctgggtacaaccacaaaac
agaagccagtccatagtctcaatagcacttttgaccagaaggggacacaa
ctatgaaccatagctggcaaccacagtcccaagaaacaagtacaacaagc
agccactttcacagatgactgatatacattctgaggactggagagggaag
gaggagtgaagtcagccactttcacagatgactcatccacattctgagga
ctagagagggaaggagcagagaagtctaggaagtaccaagaggtacttca
accctgaagttcaaccctcgcaaccctgattctagccctaggaattgaga
atcagctaaaacaaggaacagcccatctgggattgtgttcctacatggaa
ggccatgctaaaagtgaaaactacattatcaacactacaagcctcgtgaa
ctatgaagggtgcatggggctaaggataagaaattatgtaattttaattt
catttgccagcaacaagaaaggttggctgcccaagtttaccaggtgaacc
gagtgccttggcatttaccatgtcactcagcctgagatgcacccaggcag
ctgagggaacctgcccacagtcccaaactcagagtgacgaggtggcagag
aagaggaggtggactctcatcaaaggttggaatccacttcactcttggct
tttgctgaggcttcaagaggtgggagggctccgggggcatcttgcataat
gctacagactgataggagccgtaaggagggagcaattcacctccaggctg
tatagaaaaaaaaggactccttccccaagcttctgtgctataaccacctg
cagtcctgtgcttgcaaacagcaagaaacaccacaacaaacaacaatcag
agagtgcagagtgatgagccaatgaagccagccactgatgtaggaatcag
ccatgttctcatgagcagtgacacgacctttgggtcttgtggga
gaattccaggctctcctgaggaatcagctttgtctggcttggttctgtag
tggcaggtgatcctagctccagttttggaactctaggatacttacttatg
ttgtatgaggacttggggagctggagacagaggcgcaaagggatcacatc
aagaaaacacgccgccaccaccaccaccacccccgccccccaacacacac
acacacacacacacacacacacacacacacacacacacagagagacacag
aaatgaaagtaaccctgcaagacaattttttgtttgtttttaggatattc
tttttttttaaattattttctttatttacatttcaaatgttgtccccttt
cctagtttcccctctgaaaatcccctatcccctccccctccctctgctcc
acaacccactcactcccattcttggccctggcattcacctgtactggggc
atagaaccttcataagaccaagggcctttcctcccactgatgaccgacta
ggccatcctctgctacatatgcagctagagccatgagtccaacatgtgtt
ttctttgatttgtgttttagtcccagggagctctaggggtacttattagt
tcatattgttcctcctatggggctgcaaaccccttcagcttcttgggtac
tttctctagctccttggggaccctgtgctttgttcaataaatggctgtga
gcatccacttctgtatttgtcagcactggcagagagagcctctcagagac
agctttatcatgctcctgtcatcaagctcttatgggcaataatgtctggg
tttggtggttgtttatggagaggaatggatacagaaaatgtggtacattt
acacaatggagtactacgcagctattaaaaacaagaatgtatgaaattca
tagacaatgtatggatctggagatatcatccttagtgagtgaccctatca
cgatagaacacactgatattcactccactgatagtgatttagccagaact
ccgacgtctaagaaccatttgccaacacctggaactcaggaaggcaagac
gaaataggttgcacttcccttcttcttgaatgggaagcaaatatccaaga
tgattacgaacaacgttgcatgcaaagactcgtaaggtcggatcaactct
cag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27050605_27051766
seq2: B6Ng01-319I21.b_46_1189

seq1  GAATTCAACTTTTATCCACCAATACCACACAGTTCCTGGGCCTCTTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTTATCCACCAATACCACACAGTTCCTGGGCCTCTTGGAT  50

seq1  GCTGCTGCTGGGCTTCTGTCACATCATCATTGGGTGAGGACTTTGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGGGCTTCTGTCACATCATCATTGGGTGAGGACTTTGGCTGG  100

seq1  ACTAACCAGCTGTCCATATAACATGTGTCCTGCAAAAATGCTTTCCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCAGCTGTCCATATAACATGTGTCCTGCAAAAATGCTTTCCCATA  150

seq1  TCTGCAGGGAGGTGCTGCTGGGAGGCTGGGCCTGGGTACAACCACAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGGAGGTGCTGCTGGGAGGCTGGGCCTGGGTACAACCACAAAAC  200

seq1  AGAAGCCAGTCCATAGTCTCAATAGCACTTTTGACCAGAAGGGGACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAGTCCATAGTCTCAATAGCACTTTTGACCAGAAGGGGACACAA  250

seq1  CTATGAACCATAGCTGGCAACCACAGTCCCAAGAAACAAGTACAACAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACCATAGCTGGCAACCACAGTCCCAAGAAACAAGTACAACAAGC  300

seq1  AGCCACTTTCACAGATGACTGATATACATTCTGAGGACTGGAGAGGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTTCACAGATGACTGATATACATTCTGAGGACTGGAGAGGGAAG  350

seq1  GAGGAGTGAAGTCAGCCACTTTCACAGATGACTCATCCACATTCTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTGAAGTCAGCCACTTTCACAGATGACTCATCCACATTCTGAGGA  400

seq1  CTAGAGAGGGAAGGAGCAGAGAAGTCTAGGAAGTACCAAGAGGTACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGGGAAGGAGCAGAGAAGTCTAGGAAGTACCAAGAGGTACTTCA  450

seq1  ACCCTGAAGTTCAACCCTCGCAACCCTGATTCTAGCCCTAGGAATTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAAGTTCAACCCTCGCAACCCTGATTCTAGCCCTAGGAATTGAGA  500

seq1  ATCAGCTAAAACAAGGAACAGCCCATCTGGGATTGTGTTCCTACATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTAAAACAAGGAACAGCCCATCTGGGATTGTGTTCCTACATGGAA  550

seq1  GGCCATGCTAAAAGTGAAAACTACATTATCAACACTACAAGCCTCGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGCTAAAAGTGAAAACTACATTATCAACACTACAAGCCTCGTGAA  600

seq1  CTATGAAGGGTGCATGGGGCTAAGGATAAGAAATTATGTAATTTTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAGGGTGCATGGGGCTAAGGATAAGAAATTATGTAATTTTAATTT  650

seq1  CATTTGCCAGCAACAAGAAAGGTTGGCTGCCCAAGTTTACCAGGTGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCAGCAACAAGAAAGGTTGGCTGCCCAAGTTTACCAGGTGAACC  700

seq1  GAGTGCCTTGGCATTTACCATGTCACTCAGCCTGAGATGCACCCAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTTGGCATTTACCATGTCACTCAGCCTGAGATGCACCCAGGCAG  750

seq1  CTGAGGGAACCTGCCCACAGTCCCAAACTCAGAGTGACGAGGTGGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAACCTGCCCACAGTCCCAAACTCAGAGTGACGAGGTGGCAGAG  800

seq1  AAGAGGAGGTGGACTCTCATC-AAGGTTGGAATCCACTTCACTCTTGGCT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGAGGAGGTGGACTCTCATCAAAGGTTGGAATCCACTTCACTCTTGGCT  850

seq1  TTTGCTGAGGCTTCAAGAGGTGGGAGGGCTCCGGGGGCATCTTGCATAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAGGCTTCAAGAGGTGGGAGGGCTCCGGGGGCATCTTGCATAAT  900

seq1  GCTACAGGACTGATAGGAGCCGTAAGGAGGGAGCAATTCACCTCCAGGCT  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACA-GACTGATAGGAGCCGTAAGGAGGGAGCAATTCACCTCCAGGCT  949

seq1  GTATAGAAAAAAAAAGGACTCCTTCCCCAAGCTTCTGTGCTTATAAACCA  999
      |||||| ||||||||||||||||||||||||||||||||| |||||  | 
seq2  GTATAG-AAAAAAAAGGACTCCTTCCCCAAGCTTCTGTGC-TATAA--CC  995

seq1  ACCTGCAGTTCCTGTGCTTTGCAAACCAGCAAGGAAACAAACAAACAAAC  1049
      |||||||| |||||||| ||||||| |||||| ||||||    |||||||
seq2  ACCTGCAG-TCCTGTGC-TTGCAAA-CAGCAA-GAAACACCACAACAAAC  1041

seq1  AAACAAACAAACCAGGAGAGGTGCCAGAGTGATGAG-CAATG-AGGCAG-  1096
       ||||| ||      |||| ||| |||||||||||| ||||| || ||| 
seq2  -AACAATCA------GAGA-GTG-CAGAGTGATGAGCCAATGAAGCCAGC  1082

seq1  CACTGGAATGTGAAGGGATCAGCCCAATG-TCTCATGAGCAGTGACAGGC  1145
      |||||  ||||  ||| |||||||  ||| ||||||||||||||||| | 
seq2  CACTG--ATGT--AGGAATCAGCC--ATGTTCTCATGAGCAGTGACACGA  1126

seq1  ACCTGGGGTCTTG-GGGA  1162
       | | |||||||| ||||
seq2  CCTTTGGGTCTTGTGGGA  1144