BAC Information

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BAC

Clone NameB6Ng01-320C23
Chromosome12 (Build37)
Map Location 36,968,347 - 36,969,522
singlet/doubletsinglet
Overlap genenone
Upstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik
Downstream geneSostdc1, 4930579E17Rik, LOC638858, Meox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320C23.bB6Ng01-320C23.g
ACCGA109622GA109623
length1,1781,152
definitionB6Ng01-320C23.b B6Ng01-320C23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaatgctcaggtggacttctcaatgaataaggaaaatccagag
ccttgcaagccaccctaaatgctaaaagccatcttctaaccagacaacta
gacacactgcctgggtttgagtgtcagttgattcttttatttggcttggg
aagagttgggagccctacactgaggcagacttgaagaggataatgggagt
gaatatgctaaatgtacatatgaagacattacagtgtaacctataattct
gtgtaattaacagacactagtaaaaagcttataaatgcaatattactaaa
ataatgtgtatctgagacactttacaatgggtgaccaaagtgtatagtgt
caaggttcagagacttcagttacaagtagtgtttggataaaggtgaggtc
aggaagagagtggaaagacccagtggttagctttcaattgctatgtctaa
atattggagaaagtcaacttggagcaagacttgattttggctctgggttt
caaagctttcattctgttttttagtctaggtgaattatggctgatagtga
agcagaagagagatgtgtggcagatgagaccactcaagatagccagaaag
ctcagagggaggaagaggccatggttccaatagaccctcgatgacacgat
caggcttacactaggatctacctcctaatgttcccatcacccttattagc
accataagctggtcaccaggcccttaccactggaaaccttgactaccatg
gtagatggaaaacatcacaagagacctagcagggaggcttccagatgaca
cataaagtcaagagtcaacctgggtagtgctagtggatacaaaacaaaga
actgtttctcctttgctttcatcaacctccacaccaccccagtccatacc
aaacatggctagagatatgggtaaaggtaattgccaccataccatccctg
gagaagactgaagtggaggagaggaggcaagaaaaagcatgactacatct
ccatagttaatacatgaaaaagagctgtccactatgatcatgccaattcc
agggaaaaatatttgaaatgagatgcaataaatacctcaacaatgagata
ataaattcatctcactaaagcaagggtgtgtgttccatgcctgtctgtgt
gtcattccataccgagggaataatatat
gaattctcacctgaggaataccgaatgcctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggtacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatatctctcctgggc
atatatccagaagatgtcccaatcaataagaaggacacatgctccactat
gttcatagcaaccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggccctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatcatatgtactcactgataagtggatattagcccagaaac
ttagtatacccgagatataagagacaatttgtaaaacacatgaaactgaa
gaagaacaaagaccaaagtgtggacactttgccccttcttagaattggaa
acaatcacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggattgaccatctagagactgccatatccagcgatccatcccataatt
agcctccacactatgacaccattgcatacactagcaagcgtttgctgaaa
ggaccctgatatagctgtctcttgtgagactaggccggggcctagcaagc
acataagtggatgctcacagtcagctattggatagatcacagggcccaca
atggaggagctagagaaagtatccaagagctaaagagatttgcatccctg
tagtgcgacacattatgactaccagtaccccgagcactgactctagctgc
atatgtatcaaagatgctagtcgtcaattactgaagaagagccaattgaa
cccacatacatgccagttacagagacgccaggccaaaaagtgggaaaggt
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36968347_36969522
seq2: B6Ng01-320C23.b_49_1226

seq1  GAATTCAAAATGCTCAGGTGGACTTCTCAATGAATAAGGAAAATCCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATGCTCAGGTGGACTTCTCAATGAATAAGGAAAATCCAGAG  50

seq1  CCTTGCAAGCCACCCTAAATGCTAAAAGCCATCTTCTAACCAGACAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAAGCCACCCTAAATGCTAAAAGCCATCTTCTAACCAGACAACTA  100

seq1  GACACACTGCCTGGGTTTGAGTGTCAGTTGATTCTTTTATTTGGCTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTGCCTGGGTTTGAGTGTCAGTTGATTCTTTTATTTGGCTTGGG  150

seq1  AAGAGTTGGGAGCCCTACACTGAGGCAGACTTGAAGAGGATAATGGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGGGAGCCCTACACTGAGGCAGACTTGAAGAGGATAATGGGAGT  200

seq1  GAATATGCTAAATGTACATATGAAGACATTACAGTGTAACCTATAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGCTAAATGTACATATGAAGACATTACAGTGTAACCTATAATTCT  250

seq1  GTGTAATTAACAGACACTAGTAAAAAGCTTATAAATGCAATATTACTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTAACAGACACTAGTAAAAAGCTTATAAATGCAATATTACTAAA  300

seq1  ATAATGTGTATCTGAGACACTTTACAATGGGTGACCAAAGTGTATAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGTATCTGAGACACTTTACAATGGGTGACCAAAGTGTATAGTGT  350

seq1  CAAGGTTCAGAGACTTCAGTTACAAGTAGTGTTTGGATAAAGGTGAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTCAGAGACTTCAGTTACAAGTAGTGTTTGGATAAAGGTGAGGTC  400

seq1  AGGAAGAGAGTGGAAAGACCCAGTGGTTAGCTTTCAATTGCTATGTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAGTGGAAAGACCCAGTGGTTAGCTTTCAATTGCTATGTCTAA  450

seq1  ATATTGGAGAAAGTCAACTTGGAGCAAGACTTGATTTTGGCTCTGGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAGAAAGTCAACTTGGAGCAAGACTTGATTTTGGCTCTGGGTTT  500

seq1  CAAAGCTTTCATTCTGTTTTTTAGTCTAGGTGAATTATGGCTGATAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTTCATTCTGTTTTTTAGTCTAGGTGAATTATGGCTGATAGTGA  550

seq1  AGCAGAAGAGAGATGTGTGGCAGATGAGACCACTCAAGATAGCCAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGAGAGATGTGTGGCAGATGAGACCACTCAAGATAGCCAGAAAG  600

seq1  CTCAGAGGGAGGAAGAGGCCATGGTTCCAATAGACCCTCGATGACACGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGGAGGAAGAGGCCATGGTTCCAATAGACCCTCGATGACACGAT  650

seq1  CAGGCTTACACTAGGATCTACCTCCTAATGTTCCCATCACCCTTATTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTACACTAGGATCTACCTCCTAATGTTCCCATCACCCTTATTAGC  700

seq1  ACCATAAGCTGGTCACCAGGCCCTTACCACTGGAAACCTTGACTACCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAGCTGGTCACCAGGCCCTTACCACTGGAAACCTTGACTACCATG  750

seq1  GTAGATGGAAAACATCACAAGAGACCTAGCAGGGAGGCTTCCAGATGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGGAAAACATCACAAGAGACCTAGCAGGGAGGCTTCCAGATGACA  800

seq1  CATAAAGTCAAGAGTCAACCTGGGTAGTGCTAGTGGATACAAAACAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGTCAAGAGTCAACCTGGGTAGTGCTAGTGGATACAAAACAAAGA  850

seq1  ACTGTTTCTCCTTTGCTTTCATCAACCTCCACACCACCCCAGTCCATACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCTCCTTTGCTTTCATCAACCTCCACACCACCCCAGTCCATACC  900

seq1  AAACATGGCTAGAGATATGGGTAAAGGTAATTGCCACCATACCATCCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGCTAGAGATATGGGTAAAGGTAATTGCCACCATACCATCCCTG  950

seq1  GAGAAGACTGAAGTGGAGGAGAGGAGGCAAGAAAAAGCATGACTACATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACTGAAGTGGAGGAGAGGAGGCAAGAAAAAGCATGACTACATCT  1000

seq1  CCATAGTTAATACA--GAAAAGAGCTGTCCACCTATGATCATGCCATTCC  1048
      ||||||||||||||   |||||||||||||| |||||||||||||| | |
seq2  CCATAGTTAATACATGAAAAAGAGCTGTCCA-CTATGATCATGCCAATTC  1049

seq1  CAGGAAAATAT-TTTGAAATGAGATTGCAATAAATACCTCAACAATGAGA  1097
      |||| ||| || |||||||||||| |||||||||||||||||||||||||
seq2  CAGGGAAAAATATTTGAAATGAGA-TGCAATAAATACCTCAACAATGAGA  1098

seq1  TATAAATTTCATCTCACTAAGGC-AGGGTGTGTGTTTCCATGCCTGTCTG  1146
      ||  || ||||||||||||| || |||||||||| |||||||||||||||
seq2  TAATAAATTCATCTCACTAAAGCAAGGGTGTGTG-TTCCATGCCTGTCTG  1147

seq1  TGTGTCATT-CATACAGAGAGAATAATATAT  1176
      ||||||||| ||||| ||| |||||||||||
seq2  TGTGTCATTCCATACCGAGGGAATAATATAT  1178