BAC Information

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BAC

Clone NameB6Ng01-320G02
Chromosome12 (Build37)
Map Location 89,969,630 - 90,121,164
singlet/doubletdoublet
Overlap geneLOC100039261, EG666915
Upstream geneLOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Downstream geneNrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320G02.bB6Ng01-320G02.g
ACCGA109762GA109763
length1,1471,112
definitionB6Ng01-320G02.b B6Ng01-320G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,969,630 - 89,970,777)(90,120,052 - 90,121,164)
sequence
gaattcttcatatcagttcccaatgtctgggcaaggctttaaggtcttca
tcctggtcagccatcactggtctccaatttcctcaccctagctatggcaa
gagacctgctgctgagcttagctttgaatgagtcttgattcagtttggag
aaaagcagaaaatgggaccctgcatggtgtcacagaaggggtgcccagga
cttccctctttttccaaagagcaataatctatgcactcactacaagctaa
tccataacccctctgccttgtagggtaaaggcaagaaggggctggaggct
tctttctagagacaggaagagagaacccaagactggggatttccaggctg
gtggacccaaaggaggaagaaggaagtttttcttggttgagaggcaggga
tgaggagaactatttttctgactgaggggcccctctgcagcccccaagct
gagcagcattagcttcattgcagtcccattgaagactctgtttatttttc
caataatgtgttaattaaacatcgatttccgggtagaggaaagggaattg
gattgccagagctaaatggagtgaggcggattgggaagtggtgagagggg
ccccatgctggagtcagcattcttcaggatcaccccaagagggcggaggg
gtgctggggcagccttctggctcccagtttgcaaatgctatctctataag
aacctttgagagaggcattctatctactttggttatcagctttctgtgga
atgttggttcaaggaggaggtactattattttctacttttaggaacattt
ttaacttatagagagatggtctgccaggttttgctcttggtactcactaa
gagttaaaatgtttacttaagcaaacacagagtaggcactttctataatt
cactttggagaataagaaaaccgaggctctgagatataacaaatccagag
actgagactcagcaaggagaagagttctatggggcccagaaatgggctta
gtaaagcacatacttgctagcaaagcactcgaatttggaatccagtactg
acttaggatgtttgttgtagcatccttttgtgatcccatgctgagaagca
ggaaacggcagatctatagtagcctcactgacaggagtcttagtcag
gaattccagatgtggatcctaaattctgtaagccatccaaggcagaagta
gatacatgttccacgtggctatttctcactccttccaaacttgcacccac
ccacacacctaccctacccctaccaaacacacaccctatcctttggccta
atgcagaaaactgccaggagtatttggcgatgactgcaagaagcaattgc
attttataacagcccattagtgcaaagctctttaatgaaaatgaaagccg
ttaatgaagccaaaaggcagtggaagcctccactctggagagggcaatta
gagaggagagaggggagaggagaaaaataaatacaaatccaaaacaaggt
actctgtgatcaagccttacacataatgtagtcatgacaaatcagaccat
ttgtttcttgctttttaaaaagagatatacgcaaacgtttaaaattgccc
ttccccaggcttccattctacctctccagaccccatattgcagaatgatt
caacctcaaaatgttgtacctttacatttaaaaaaatacaaacagcaagt
ggggtttttaactctgatagaaggctttcctgtagaggtccacatactaa
agcaaaatgagtcacaaaagtgaactttgcaattactgtattatttttat
agctcctgtgaatcagaagtgctcttattttcacaaaagcaaagattgca
gaatagtctctcgccaaacatactacttcctgtgaaaagacaagactaga
gattgctgcttccaggatgagcacaaaagagatcttcctgaggttttgat
gctatgtcagaaaccatctgataggatcctgtccctctatactgacacct
caatggcccactgtacttcctttgatacccagatttgcatctatgagaaa
gacagtatcagacctgtatccatctcaactcctaaaccacacttgacatt
tctttgagaatgggtgacacatcatttttatatgcaggtagattatgtca
tctcaaatcttttcttctctgcttagagaaacccacattcttggtattct
tctttaccatactatttccaatggtgtatgatagcaaagtaccacatatt
acaacttcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89969630_89970777
seq2: B6Ng01-320G02.b_45_1191

seq1  GAATTCTTCATATCAGTTCCCAATGTCTGGGCAAGGCTTTAAGGTCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATATCAGTTCCCAATGTCTGGGCAAGGCTTTAAGGTCTTCA  50

seq1  TCCTGGTCAGCCATCACTGGTCTCCAATTTCCTCACCCTAGCTATGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCAGCCATCACTGGTCTCCAATTTCCTCACCCTAGCTATGGCAA  100

seq1  GAGACCTGCTGCTGAGCTTAGCTTTGAATGAGTCTTGATTCAGTTTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGCTGCTGAGCTTAGCTTTGAATGAGTCTTGATTCAGTTTGGAG  150

seq1  AAAAGCAGAAAATGGGACCCTGCATGGTGTCACAGAAGGGGTGCCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAAAATGGGACCCTGCATGGTGTCACAGAAGGGGTGCCCAGGA  200

seq1  CTTCCCTCTTTTTCCAAAGAGCAATAATCTATGCACTCACTACAAGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTTTTTCCAAAGAGCAATAATCTATGCACTCACTACAAGCTAA  250

seq1  TCCATAACCCCTCTGCCTTGTAGGGTAAAGGCAAGAAGGGGCTGGAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACCCCTCTGCCTTGTAGGGTAAAGGCAAGAAGGGGCTGGAGGCT  300

seq1  TCTTTCTAGAGACAGGAAGAGAGAACCCAAGACTGGGGATTTCCAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAGAGACAGGAAGAGAGAACCCAAGACTGGGGATTTCCAGGCTG  350

seq1  GTGGACCCAAAGGAGGAAGAAGGAAGTTTTTCTTGGTTGAGAGGCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCCAAAGGAGGAAGAAGGAAGTTTTTCTTGGTTGAGAGGCAGGGA  400

seq1  TGAGGAGAACTATTTTTCTGACTGAGGGGCCCCTCTGCAGCCCCCAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAACTATTTTTCTGACTGAGGGGCCCCTCTGCAGCCCCCAAGCT  450

seq1  GAGCAGCATTAGCTTCATTGCAGTCCCATTGAAGACTCTGTTTATTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCATTAGCTTCATTGCAGTCCCATTGAAGACTCTGTTTATTTTTC  500

seq1  CAATAATGTGTTAATTAAACATCGATTTCCGGGTAGAGGAAAGGGAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGTGTTAATTAAACATCGATTTCCGGGTAGAGGAAAGGGAATTG  550

seq1  GATTGCCAGAGCTAAATGGAGTGAGGCGGATTGGGAAGTGGTGAGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAGAGCTAAATGGAGTGAGGCGGATTGGGAAGTGGTGAGAGGGG  600

seq1  CCCCATGCTGGAGTCAGCATTCTTCAGGATCACCCCAAGAGGGCGGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGCTGGAGTCAGCATTCTTCAGGATCACCCCAAGAGGGCGGAGGG  650

seq1  GTGCTGGGGCAGCCTTCTGGCTCCCAGTTTGCAAATGCTATCTCTATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGCAGCCTTCTGGCTCCCAGTTTGCAAATGCTATCTCTATAAG  700

seq1  AACCTTTGAGAGAGGCATTCTATCTACTTTGGTTATCAGCTTTCTGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGAGAGAGGCATTCTATCTACTTTGGTTATCAGCTTTCTGTGGA  750

seq1  ATGTTGGTTCAAGGAGGAGGTACTATTATTTTCTACTTTTAGGAACATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTTCAAGGAGGAGGTACTATTATTTTCTACTTTTAGGAACATTT  800

seq1  TTAACTTATAGAGAGATGGTCTGCCAGGTTTTGCTCTTGGTACTCACTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTATAGAGAGATGGTCTGCCAGGTTTTGCTCTTGGTACTCACTAA  850

seq1  GAGTTAAAATGTTTACTTAAGCAAACACAGAGTAGGCACTTTCTATAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAAATGTTTACTTAAGCAAACACAGAGTAGGCACTTTCTATAATT  900

seq1  CACTTTGGAG-ATAAGAAAACCGAGGCTCTGAGATATAACAAATCCAGAG  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGAGAATAAGAAAACCGAGGCTCTGAGATATAACAAATCCAGAG  950

seq1  ACTGAGACTCAGCAAGGAGAAGGAGTTCTAT-GGGCCCAGGAAATGGCTT  998
      ||||||||||||||||||||| ||||||||| |||||||| ||  |||||
seq2  ACTGAGACTCAGCAAGGAGAA-GAGTTCTATGGGGCCCAGAAATGGGCTT  999

seq1  AGTAAAGCACATACTTTGCTAGCAAAAGCACTCGAATTTGGATCCCAGTA  1048
      |||||||||||||| |||||||| ||||||||||||||||||  ||||||
seq2  AGTAAAGCACATAC-TTGCTAGC-AAAGCACTCGAATTTGGAATCCAGTA  1047

seq1  CTGACTTAAGGATG-TTGTTGTAGCAT-CTTTTGTGATCCCATTGCCTGA  1096
      ||||||| |||||| |||||||||||| |||||||||||||||   ||||
seq2  CTGACTT-AGGATGTTTGTTGTAGCATCCTTTTGTGATCCCAT--GCTGA  1094

seq1  GAGGCAGAGACAGGCAGATCTATAG-AG-CTCACTGGCCAGGGAGTC-TA  1143
      || ||||  |  ||||||||||||| || ||||||| |   |||||| ||
seq2  GAAGCAGGAAACGGCAGATCTATAGTAGCCTCACTGAC--AGGAGTCTTA  1142

seq1  GTCAG  1148
      |||||
seq2  GTCAG  1147

seq1: chr12_90120052_90121164
seq2: B6Ng01-320G02.g_65_1176 (reverse)

seq1  CCATGAA-TTGTAATATGTGTAATTTTGCTATCATACAC--ATGGAAATA  47
      ||||||| ||||||||||||  | |||||||||||||||   ||||||||
seq2  CCATGAAGTTGTAATATGTGGTACTTTGCTATCATACACCATTGGAAATA  50

seq1  GTTATGGGTAAAG-AGAATACCAAGAATGTGGGTTTCTCTAGGCAGAGAA  96
      | ||| ||||||| ||||||||||||||||||||||||||| ||||||||
seq2  G-TAT-GGTAAAGAAGAATACCAAGAATGTGGGTTTCTCTAAGCAGAGAA  98

seq1  GAAAAGATTTGAGATGACATAATTCCTTACCTGCATATAAAAATGATGTG  146
      |||||||||||||||||||||||    |||||||||||||||||||||||
seq2  GAAAAGATTTGAGATGACATAAT---CTACCTGCATATAAAAATGATGTG  145

seq1  TTCACCCATTCTCAAAG-AATGTCAAGTGTGGTTTAGGAGTTGAGATGGA  195
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  -TCACCCATTCTCAAAGAAATGTCAAGTGTGGTTTAGGAGTTGAGATGGA  194

seq1  TACAGGTCTGATACTGTCTTTCTCATAGATGCAAATCTGGGTATCAAAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTCTGATACTGTCTTTCTCATAGATGCAAATCTGGGTATCAAAGG  244

seq1  AAGTACAGTGGGCCATTGAGGTGTCAGTATAGAGGGACAGGATCCTATCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGTGGGCCATTGAGGTGTCAGTATAGAGGGACAGGATCCTATCA  294

seq1  GATGGTTTCTGACATAGCATCAAAACCTCAGGAAGATCTCTTTTGTGCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTCTGACATAGCATCAAAACCTCAGGAAGATCTCTTTTGTGCTC  344

seq1  ATCCTGGAAGCAGCAATCTCTAGTCTTGTCTTTTCACAGGAAGTAGTATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGAAGCAGCAATCTCTAGTCTTGTCTTTTCACAGGAAGTAGTATG  394

seq1  TTTGGCGAGAGACTATTCTGCAATCTTTGCTTTTGTGAAAATAAGAGCAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCGAGAGACTATTCTGCAATCTTTGCTTTTGTGAAAATAAGAGCAC  444

seq1  TTCTGATTCACAGGAGCTATAAAAATAATACAGTAATTGCAAAGTTCACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTCACAGGAGCTATAAAAATAATACAGTAATTGCAAAGTTCACT  494

seq1  TTTGTGACTCATTTTGCTTTAGTATGTGGACCTCTACAGGAAAGCCTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTCATTTTGCTTTAGTATGTGGACCTCTACAGGAAAGCCTTCT  544

seq1  ATCAGAGTTAAAAACCCCACTTGCTGTTTGTATTTTTTTAAATGTAAAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTTAAAAACCCCACTTGCTGTTTGTATTTTTTTAAATGTAAAGG  594

seq1  TACAACATTTTGAGGTTGAATCATTCTGCAATATGGGGTCTGGAGAGGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATTTTGAGGTTGAATCATTCTGCAATATGGGGTCTGGAGAGGTA  644

seq1  GAATGGAAGCCTGGGGAAGGGCAATTTTAAACGTTTGCGTATATCTCTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAGCCTGGGGAAGGGCAATTTTAAACGTTTGCGTATATCTCTTT  694

seq1  TTAAAAAGCAAGAAACAAATGGTCTGATTTGTCATGACTACATTATGTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGCAAGAAACAAATGGTCTGATTTGTCATGACTACATTATGTGT  744

seq1  AAGGCTTGATCACAGAGTACCTTGTTTTGGATTTGTATTTATTTTTCTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGATCACAGAGTACCTTGTTTTGGATTTGTATTTATTTTTCTCC  794

seq1  TCTCCCCTCTCTCCTCTCTAATTGCCCTCTCCAGAGTGGAGGCTTCCACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCTCTCCTCTCTAATTGCCCTCTCCAGAGTGGAGGCTTCCACT  844

seq1  GCCTTTTGGCTTCATTAACGGCTTTCATTTTCATTAAAGAGCTTTGCACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGGCTTCATTAACGGCTTTCATTTTCATTAAAGAGCTTTGCACT  894

seq1  AATGGGCTGTTATAAAATGCAATTGCTTCTTGCAGTCATCGCCAAATACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCTGTTATAAAATGCAATTGCTTCTTGCAGTCATCGCCAAATACT  944

seq1  CCTGGCAGTTTTCTGCATTAGGCCAAAGGATAGGGTGTGTGTTTGGTAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGTTTTCTGCATTAGGCCAAAGGATAGGGTGTGTGTTTGGTAGG  994

seq1  GGTAGGGTAGGTGTGTGGGTGGGTGCAAGTTTGGAAGGAGTGAGAAATAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTAGGTGTGTGGGTGGGTGCAAGTTTGGAAGGAGTGAGAAATAG  1044

seq1  CCACGTGGAACATGTATCTACTTCTGCCTTGGATGGCTTACAGAATTTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGAACATGTATCTACTTCTGCCTTGGATGGCTTACAGAATTTAG  1094

seq1  GATCCACATCTGGAATTC  1113
      ||||||||||||||||||
seq2  GATCCACATCTGGAATTC  1112