BAC Information

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BAC

Clone NameB6Ng01-320P07
Chromosome12 (Build37)
Map Location 76,784,026 - 76,892,317
singlet/doubletdoublet
Overlap geneSgpp1
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931
Downstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320P07.bB6Ng01-320P07.g
ACCGA110192GA110193
length1,083105
definitionB6Ng01-320P07.b B6Ng01-320P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,784,026 - 76,785,067)(76,892,213 - 76,892,317)
sequence
gaattccagactagccttgacgtacatggtgactcataccttgtaatccc
agcacgtaggaggcaaaaactggaagactgttgtgagtctactatttact
aagggctggcttacactcacagaggttcaatccagtatcatcatggcagg
aagcatggcagcacacagacagacctggtgttggagaagctgagagttct
acatcttgatccatatccagccaaaagagagagtctctcttctgcaggca
gccaggaggagggtctcttccacactgggaggagcctgatcataggagca
gacctccaaagcctacccccacagtgacacacttcctccaacaaggccac
acccccaaacagcaccactcctatgggccaagcatattcaaaccaccaca
gtggctaaaggctactgctgccaaatctggtagccccaagttcagtgcct
gaaactcacatggtggaagaaggagacaaactcctccacgttgtcctctc
atatcttcgtgggtgtcatagcctgtgtgtgcatactacattcacacact
aaagaaacacatgtctttttttttttaattgtaaaaaattcacaatagat
ttaaaaaaaaataaacactattactcaaaatgtcatcatgagtaagttat
ttgtaaatctcaagttcatagttgggtaactatctcatcatgaattttat
gaagattaaatagcactgtaaatagctacctagtacagagaaggcctgca
tcatgaagattaaatagcagtgtaaataagttaccaggtacaggggaggc
gtcaggattatgagtgccaattccaacctttgctcccactgtaaggctga
ttcggactggaccaagggtgtcaaaaacaagctcatgtttttctgatctt
aacttctggagttattctcaaagaaagcaaagcaagttgagcgtgagcac
tagaactgcctttgaacacaaggaaatgagtggggaagcatgaacacgct
gggtgtggtgtgcagcctgaccccagcctcttgtttcctggagatttaga
taccagatacaattggcaaacacatgaaaatca
ctatgaatttgaggcgtggtctatagtccagggcagccaagcaaataaat
aaaatcaacacataaatggaaatgtattgtgtgtgtgtgtgtgtgtgtgt
gtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76784026_76785067
seq2: B6Ng01-320P07.b_98_1129

seq1  GCACGTAGGAGGCAAAAACTGGAAGACTGTTGTGAGTCTACTATTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTAGGAGGCAAAAACTGGAAGACTGTTGTGAGTCTACTATTTACTA  50

seq1  AGGGCTGGCTTACACTCACAGAGGTTCAATCCAGTATCATCATGGCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGCTTACACTCACAGAGGTTCAATCCAGTATCATCATGGCAGGA  100

seq1  AGCATGGCAGCACACAGACAGACCTGGTGTTGGAGAAGCTGAGAGTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCAGCACACAGACAGACCTGGTGTTGGAGAAGCTGAGAGTTCTA  150

seq1  CATCTTGATCCATATCCAGCCAAAAGAGAGAGTCTCTCTTCTGCAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGATCCATATCCAGCCAAAAGAGAGAGTCTCTCTTCTGCAGGCAG  200

seq1  CCAGGAGGAGGGTCTCTTCCACACTGGGAGGAGCCTGATCATAGGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGAGGGTCTCTTCCACACTGGGAGGAGCCTGATCATAGGAGCAG  250

seq1  ACCTCCAAAGCCTACCCCCACAGTGACACACTTCCTCCAACAAGGCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAAAGCCTACCCCCACAGTGACACACTTCCTCCAACAAGGCCACA  300

seq1  CCCCCAAACAGCACCACTCCTATGGGCCAAGCATATTCAAACCACCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAACAGCACCACTCCTATGGGCCAAGCATATTCAAACCACCACAG  350

seq1  TGGCTAAAGGCTACTGCTGCCAAATCTGGTAGCCCCAAGTTCAGTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAAGGCTACTGCTGCCAAATCTGGTAGCCCCAAGTTCAGTGCCTG  400

seq1  AAACTCACATGGTGGAAGAAGGAGACAAACTCCTCCACGTTGTCCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACATGGTGGAAGAAGGAGACAAACTCCTCCACGTTGTCCTCTCA  450

seq1  TATCTTCGTGGGTGTCATAGCCTGTGTGTGCATACTACATTCACACACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCGTGGGTGTCATAGCCTGTGTGTGCATACTACATTCACACACTA  500

seq1  AAGAAACACATGTCTTTTTTTTTTTAATTGTAAAAAATTCACAATAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACACATGTCTTTTTTTTTTTAATTGTAAAAAATTCACAATAGATT  550

seq1  TAAAAAAAAATAAACACTATTACTCAAAATGTCATCATGAGTAAGTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAATAAACACTATTACTCAAAATGTCATCATGAGTAAGTTATT  600

seq1  TGTAAATCTCAAGTTCATAGTTGGGTAACTATCTCATCATGAATTTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATCTCAAGTTCATAGTTGGGTAACTATCTCATCATGAATTTTATG  650

seq1  AAGATTAAATAGCACTGTAAATAGCTACCTAGTACAGAGAAGGCCTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAATAGCACTGTAAATAGCTACCTAGTACAGAGAAGGCCTGCAT  700

seq1  CATGAAGATTAAATAGCAGTGTAAATAAGTTACCAGGTACAGGGGAGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATTAAATAGCAGTGTAAATAAGTTACCAGGTACAGGGGAGGCG  750

seq1  TCAGGATTATGAGTGCCAATTCCAACCTTTGCTCCCACTGTAAGGCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTATGAGTGCCAATTCCAACCTTTGCTCCCACTGTAAGGCTGAT  800

seq1  TCGGACTGGACCAAGGGTGTCAAAAACAAGCTCATG-TTTTCTGATCTTA  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCGGACTGGACCAAGGGTGTCAAAAACAAGCTCATGTTTTTCTGATCTTA  850

seq1  ACTTCTGGAGTTATTCTCAAAGAAAGCAAAGCAAGTTGAGCGTGAGCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGAGTTATTCTCAAAGAAAGCAAAGCAAGTTGAGCGTGAGCACT  900

seq1  AGAACTGCC-TTGAACACAAGGAAATGAGTGGGGGAAGCATGAACACGCT  948
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  AGAACTGCCTTTGAACACAAGGAAATGAGT-GGGGAAGCATGAACACGCT  949

seq1  GGGTGTGGTGGTGCAGGCCTGGAACCCCAGCCTTCTGTTTCCCTGGAAGA  998
      ||||||||| ||||| |||||  ||||||||||  ||||| ||||| |||
seq2  GGGTGTGGT-GTGCA-GCCTG--ACCCCAGCCTCTTGTTT-CCTGG-AGA  993

seq1  TTTTAGAATACCCAAGATACAATTTGCAAAACACATGAAAATCA  1042
       ||||| |||||  |||||||||| || ||||||||||||||||
seq2  -TTTAG-ATACC--AGATACAATTGGC-AAACACATGAAAATCA  1032

seq1: chr12_76892213_76892317
seq2: B6Ng01-320P07.g_72_176 (reverse)

seq1  CACACACACACACACACACACACACACAATACATTTCCATTTATGTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAATACATTTCCATTTATGTGTTG  50

seq1  ATTTTATTTATTTGCTTGGCTGCCCTGGACTATAGACCACGCCTCAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTATTTGCTTGGCTGCCCTGGACTATAGACCACGCCTCAAATT  100

seq1  CATAG  105
      |||||
seq2  CATAG  105