BAC Information

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BAC

Clone NameB6Ng01-321F22
Chromosome12 (Build37)
Map Location 50,985,910 - 51,092,525
singlet/doubletdoublet
Overlap geneLOC100039455
Upstream geneGA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077
Downstream genePrkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321F22.bB6Ng01-321F22.g
ACCGA110496GA110497
length1,1901,102
definitionB6Ng01-321F22.b B6Ng01-321F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,985,910 - 50,987,113)(51,091,400 - 51,092,525)
sequence
gaattccttggacgtatggactcacgatattaaagtgaagattacaagga
ccatggttttctgttgttcccctagacattcccacctctgttataccttc
atttcagaaatataccactatattcagtgaaatattaaggccagatatta
taattaattgcacatctatatctaaacttatacctataactacatatctg
ttttctctttcatcatctcttagctacaagtatcaactaaagagagcttc
tttgcaagctactggccattgtttctaaaaaacgggattctttgcctttc
cataggatgcaggcatttagtcacatggaactgtcatttaatgtgaattc
aaatatgtttctctcgatgtaatactttaattaacatgtaatttccttcc
ccctgaaaatttttagttcattggatataagagttgaaataaaaagactt
aaagtgcaggttgcagggtgcagagagatctcacctcagaataatctttc
ctctcttaactgtcctcctctgttccctaattccctcaaggtgacatcta
atccactgatgtaaagatgggatgctttgaccatgcttacctgggtcagt
gttttccaagttcacacatgggtaaatattctcctgactctagagctttc
atatatatgaataagcaagctcctttcagaatactgtaaaactatttaaa
attttgtgtatgccttgtggtatttctggtttcctttcacacttcaaact
gagaataaaacagcttttctgtattaagccgtagcatgatttggcattta
tatgcagtaggagactatagagcactacctgcttcaagctgggattccta
ggaggttttctggattcaacaaagctcagcctgggaaagtagataacaat
tttaagaattgttctacgaaggctaagttttatttgtcagcttttactcc
ccacccaaggatggtacagttctcagatcattactgtctcatctccagat
acactctatagcattttctacatgcctaaaaaatttatcatcacttcctt
accatgatgagcattgcttgctaaatatttacagaataagaaatttattt
gagcttgactatcctattactggctaagagctctgtttgaacactgcgtt
actactggctttgattagcaatgcagaaagaattgttaac

gaattcaaatgattgcatctcctttgccaaatgttgtacgttcttcctga
gaatgacacgtaagatcaggaatcacagggctgctgaaaaaagtttatgc
tttgggtttggaggggatcatagactttggatacccacactaattctttc
agcctactagaaagccgtctcataaatatctatttcagagctctaaaatg
attaaatgacatcatgataacctgatttaaagaaaatgttacaagagggc
cttaaatggtaccctggtggcctggaagagttaatgcggttttcttaagt
gcccaattcagctttagtttgcagtgtacagagcagggagtgtgtctcaa
taactcactgatagtttcatctaatatcagtatattaaggggagataaga
tttttgaaggaatctatcatagagtagctggccattcagtgtaattcacc
tcatctaaagaaaggaagatggaggacatttattctattttatgacataa
agtattaggtctagaactgaaaataaagccaattaacattgtaacagcaa
aaagatgggaaggagaagcctttgcaaattaaaaatcttatgaagaaata
ttgaaattattctctgtctaaagaggcaaaaggtagacatgtaagtgggc
gagcacttgagaaggaaagtcgaaggggaagagagggagatgagggagga
aaactcagattagagcattaaactgtcaaaccaaaaaggagatttgaaaa
caagagaaaatatattatgtaggacctatattttcttctgaaatagcgat
acttatgcataaccttttctggaagcaaaacataccaacttcttatagcg
gtatatatcacttagtaagaatgttgcacttttcccagtacttgatacaa
gctataaatacaccctagaacaagagcaataaaatatttttctttctatt
atgcaaaaatatgtatttcttatctatgttagtaaaaagtgacaaattat
atttgaatgcaacttattttaaaacatataagtggctgaaacataacaaa
gcaatgaattgagagtacagttctgggatcaagtatgaaatatcttggca
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_50985910_50987113
seq2: B6Ng01-321F22.b_47_1236

seq1  GAATTCCTTGGACGTATGGACTCACGATATTAAAGTGAAGATTACAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGACGTATGGACTCACGATATTAAAGTGAAGATTACAAGGA  50

seq1  CCATGGTTTTCTGTTGTTCCCCTAGACATTCCCACCTCTGTTATACCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTTTCTGTTGTTCCCCTAGACATTCCCACCTCTGTTATACCTTC  100

seq1  ATTTCAGAAATATACCACTATATTCAGTGAAATATTAAGGCCAGATATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAAATATACCACTATATTCAGTGAAATATTAAGGCCAGATATTA  150

seq1  TAATTAATTGCACATCTATATCTAAACTTATACCTATAACTACATATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTGCACATCTATATCTAAACTTATACCTATAACTACATATCTG  200

seq1  TTTTCTCTTTCATCATCTCTTAGCTACAAGTATCAACTAAAGAGAGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTCATCATCTCTTAGCTACAAGTATCAACTAAAGAGAGCTTC  250

seq1  TTTGCAAGCTACTGGCCATTGTTTCTAAAAAACGGGATTCTTTGCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGCTACTGGCCATTGTTTCTAAAAAACGGGATTCTTTGCCTTTC  300

seq1  CATAGGATGCAGGCATTTAGTCACATGGAACTGTCATTTAATGTGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGATGCAGGCATTTAGTCACATGGAACTGTCATTTAATGTGAATTC  350

seq1  AAATATGTTTCTCTCGATGTAATACTTTAATTAACATGTAATTTCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTTCTCTCGATGTAATACTTTAATTAACATGTAATTTCCTTCC  400

seq1  CCCTGAAAATTTTTAGTTCATTGGATATAAGAGTTGAAATAAAAAGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAAATTTTTAGTTCATTGGATATAAGAGTTGAAATAAAAAGACTT  450

seq1  AAAGTGCAGGTTGCAGGGTGCAGAGAGATCTCACCTCAGAATAATCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCAGGTTGCAGGGTGCAGAGAGATCTCACCTCAGAATAATCTTTC  500

seq1  CTCTCTTAACTGTCCTCCTCTGTTCCCTAATTCCCTCAAGGTGACATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAACTGTCCTCCTCTGTTCCCTAATTCCCTCAAGGTGACATCTA  550

seq1  ATCCACTGATGTAAAGATGGGATGCTTTGACCATGCTTACCTGGGTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGATGTAAAGATGGGATGCTTTGACCATGCTTACCTGGGTCAGT  600

seq1  GTTTTCCAAGTTCACACATGGGTAAATATTCTCCTGACTCTAGAGCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCAAGTTCACACATGGGTAAATATTCTCCTGACTCTAGAGCTTTC  650

seq1  ATATATATGAATAAGCAAGCTCCTTTCAGAATACTGTAAAACTATTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGAATAAGCAAGCTCCTTTCAGAATACTGTAAAACTATTTAAA  700

seq1  ATTTTGTGTATGCCTTGTGGTATTTCTGGTTTCCTTTCACACTTCAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGTATGCCTTGTGGTATTTCTGGTTTCCTTTCACACTTCAAACT  750

seq1  GAGAATAAAACAGCTTTTCTGTATTAAGCCGTAGCATGATTTGGCATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAAAACAGCTTTTCTGTATTAAGCCGTAGCATGATTTGGCATTTA  800

seq1  TATGCAGTAGGAGACTATAGAGCACTACCTGCTTCAAGCTGGGATTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTAGGAGACTATAGAGCACTACCTGCTTCAAGCTGGGATTCCTA  850

seq1  GGAGGTTTTCTGGATTCAACAAAGCTCAGCCTGGGAAAGTAGATAACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTTCTGGATTCAACAAAGCTCAGCCTGGGAAAGTAGATAACAAT  900

seq1  TTTAAGAATTGTTCTACGAAGGCTAAGTTTTATTTGTCAGCTTTTACTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAATTGTTCTACGAAGGCTAAGTTTTATTTGTCAGCTTTTACTCC  950

seq1  CCACCCAAGGATGGTAACAGTTCTCAGATCATTACTGTCTCCATCTCCAG  1000
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  CCACCCAAGGATGGT-ACAGTTCTCAGATCATTACTGTCT-CATCTCCAG  998

seq1  AATACACTCTATAAGCATTTCTTACATTGCCTAAAAAATTTATCATCACT  1050
       ||||||||||| |||||||  |||| |||||||||||||||||||||||
seq2  -ATACACTCTAT-AGCATTTTCTACA-TGCCTAAAAAATTTATCATCACT  1045

seq1  TCCTTAACATGATGAAGCATTGCTTTGCTAAATATTTACAGATAAAGAAA  1100
      |||||| ||||||| |||||||| ||||||||||||||||||  ||||||
seq2  TCCTTACCATGATG-AGCATTGC-TTGCTAAATATTTACAGAATAAGAAA  1093

seq1  TTTATTTTGAGCTTGACTATCCTATTACTGCCAAAGGAGCTCTGTTTTGA  1150
      |||| ||||||||||||||||||||||||| | || |||||||| |||||
seq2  TTTA-TTTGAGCTTGACTATCCTATTACTGGCTAA-GAGCTCTG-TTTGA  1140

seq1  ACACTGCTGTACTTATTGGCTTTGATTAGGAAAATGAAGAAAGAAAATGT  1200
      |||||||  ||| || |||||||||||||   |||| |||||| || |||
seq2  ACACTGCGTTAC-TACTGGCTTTGATTAG--CAATGCAGAAAG-AATTGT  1186

seq1  TAAC  1204
      ||||
seq2  TAAC  1190


seq1: chr12_51091400_51092525
seq2: B6Ng01-321F22.g_67_1168 (reverse)

seq1  AATGCCAAGGATATTTTCTACCTTGGATCCCAG-ACTGTTTCTCTTCTAT  49
      |||||||| |||||||  |||  | |||||||| |||| | ||| || | 
seq2  AATGCCAA-GATATTTCATAC--TTGATCCCAGAACTG-TACTC-TCAA-  44

seq1  TTTTCATTGCTTTGTTATGTTTTCAGGCCACTTATAATGTTTTAAAATTA  99
        ||||||||||||||||| ||||| ||||||||| ||||||||||| ||
seq2  --TTCATTGCTTTGTTATG-TTTCA-GCCACTTAT-ATGTTTTAAAA-TA  88

seq1  AGTTGCATTCAAAATAATTAAATTTTGTCAACTTTTTTACTAAACATAAG  149
      |||||||||||||     || | |||||||   |||||||| ||||| ||
seq2  AGTTGCATTCAAA-----TATAATTTGTCA--CTTTTTACT-AACAT-AG  129

seq1  ATAAGAAATACATATTTTTGCATAATAGGAAAGAAAAATATTTTATTTGC  199
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  ATAAGAAATACATATTTTTGCATAATA-GAAAGAAAAATATTTTA-TTGC  177

seq1  TCTTTGTTCTTAGGGTGTATTTTATAGCTTTGTTATCAAGTACTGGG-AA  248
      || |||||| ||||||||| ||||||||||   |||||||||||||| ||
seq2  TC-TTGTTC-TAGGGTGTA-TTTATAGCTT--GTATCAAGTACTGGGAAA  222

seq1  AGTGCAACATTC-TACT-AGTGATATATACCGCTATAAGAAGTTGGTATG  296
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  AGTGCAACATTCTTACTAAGTGATATATACCGCTATAAGAAGTTGGTATG  272

seq1  TTTTGCTTCCAGAAAAGGTTATGCATAAGTATCGCTATTTCAGAAGAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTCCAGAAAAGGTTATGCATAAGTATCGCTATTTCAGAAGAAAA  322

seq1  TATAGGTCCTACATAATATATTTTCTCTTGTTTTCAAATCTCCTTTTTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTCCTACATAATATATTTTCTCTTGTTTTCAAATCTCCTTTTTGG  372

seq1  TTTGACAGTTTAATGCTCTAATCTGAGTTTTCCTCCCTCATCTCCCTCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGTTTAATGCTCTAATCTGAGTTTTCCTCCCTCATCTCCCTCTC  422

seq1  TTCCCCTTCGACTTTCCTTCTCAAGTGCTCGCCCACTTACATGTCTACCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTCGACTTTCCTTCTCAAGTGCTCGCCCACTTACATGTCTACCT  472

seq1  TTTGCCTCTTTAGACAGAGAATAATTTCAATATTTCTTCATAAGATTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTTTAGACAGAGAATAATTTCAATATTTCTTCATAAGATTTTT  522

seq1  AATTTGCAAAGGCTTCTCCTTCCCATCTTTTTGCTGTTACAATGTTAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCAAAGGCTTCTCCTTCCCATCTTTTTGCTGTTACAATGTTAATT  572

seq1  GGCTTTATTTTCAGTTCTAGACCTAATACTTTATGTCATAAAATAGAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATTTTCAGTTCTAGACCTAATACTTTATGTCATAAAATAGAATA  622

seq1  AATGTCCTCCATCTTCCTTTCTTTAGATGAGGTGAATTACACTGAATGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTCCATCTTCCTTTCTTTAGATGAGGTGAATTACACTGAATGGC  672

seq1  CAGCTACTCTATGATAGATTCCTTCAAAAATCTTATCTCCCCTTAATATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACTCTATGATAGATTCCTTCAAAAATCTTATCTCCCCTTAATATA  722

seq1  CTGATATTAGATGAAACTATCAGTGAGTTATTGAGACACACTCCCTGCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTAGATGAAACTATCAGTGAGTTATTGAGACACACTCCCTGCTC  772

seq1  TGTACACTGCAAACTAAAGCTGAATTGGGCACTTAAGAAAACCGCATTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTGCAAACTAAAGCTGAATTGGGCACTTAAGAAAACCGCATTAA  822

seq1  CTCTTCCAGGCCACCAGGGTACCATTTAAGGCCCTCTTGTAACATTTTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGGCCACCAGGGTACCATTTAAGGCCCTCTTGTAACATTTTCT  872

seq1  TTAAATCAGGTTATCATGATGTCATTTAATCATTTTAGAGCTCTGAAATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCAGGTTATCATGATGTCATTTAATCATTTTAGAGCTCTGAAATA  922

seq1  GATATTTATGAGACGGCTTTCTAGTAGGCTGAAAGAATTAGTGTGGGTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTATGAGACGGCTTTCTAGTAGGCTGAAAGAATTAGTGTGGGTAT  972

seq1  CCAAAGTCTATGATCCCCTCCAAACCCAAAGCATAAACTTTTTTCAGCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCTATGATCCCCTCCAAACCCAAAGCATAAACTTTTTTCAGCAG  1022

seq1  CCCTGTGATTCCTGATCTTACGTGTCATTCTCAGGAAGAACGTACAACAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGATTCCTGATCTTACGTGTCATTCTCAGGAAGAACGTACAACAT  1072

seq1  TTGGCAAAGGAGATGCAATCATTTGAATTC  1126
      ||||||||||||||||||||||||||||||
seq2  TTGGCAAAGGAGATGCAATCATTTGAATTC  1102


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