BAC Information

Click to search

BAC

Clone NameB6Ng01-321G18
Chromosome12 (Build37)
Map Location 11,425,341 - 11,426,473
singlet/doubletsinglet
Overlap geneVsnl1
Upstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6
Downstream geneEG209550, LOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321G18.bB6Ng01-321G18.g
ACCGA110532GA110533
length1,2171,137
definitionB6Ng01-321G18.b B6Ng01-321G18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaatgaatccttcaaatagactcactttctgggttaaagtca
tctgggctgcccagaactaattcacatgagagatgaactgtatccaagaa
ccttgaactcatcttttgtacttgttattgggaaggcaggttctgactcc
atttatttgcccttgactacattctagctggttcccctcacataaaaatc
aagtttcctaaattcattgtttttaatagctgagtagtactccattttgt
aaatgtaccacattttctgtattcaatcctctgttgaggaacatctgggt
tctttccagcttctggctattataaataagggtgctattaacatagtgga
acatgtgtccttattaccagttggaacatcttctgggtatatgcccagga
gaggtattgctggatctaccggtagtgttatgtccaattttctgaggaat
ctccagactgacttccaagtggttgtacaagcttgcaaccccaccagcaa
cggaggagtgttcctctttctccacatcctcgccagcatctgctgtcacc
tgaatttttgatcttagccattctgactggtatgagatggaatctcaggg
ttgttttgatttgcatttcccttatgattaaggatgttgaatattttttc
aggtgcttctcaacccttcagtataattcttgggcaaatggatgtatctg
gaggatatcatcctgagtgagataacccaatcacaaaagaagtcacttga
tattcactcactgacaactggatattagcctaaaaacttagaatacccaa
gatacaatttgcaaaacacaagaaaatcaagaagaaggaagaccaacgtg
tgaatacttcattcctccttagaataggaaacaaaatacctcatggaaag
aattacagagacaaagtttagagctaagatgaaggatggatcatccagag
actacctccacctggggatccatcccatagtcagccaccaaacacagaca
ctattgcatatgccagcaagattttgctgaaaggagcctgatatagctgt
cccttggtgagcctatgccaatgcctagcaaatacagaagttggacgctc
acaggtcatctattgatggaaccacagggtctccatggaggagcctagag
gaaggtatccagaactgatggctacaaccttatagtggacaccattattg
aaccttacacccgaatc
gaattctatgattcattgaatgtatatttattaggattctatagttgctt
aggcattgaataagaccttgaatgagcataccactgaattaattgagtgt
tgtgtctcagaactttgttttaatgtcagtcttagaagtcctatttgtac
agcactataaacagtcgtaatcatagccttatggtaggttcaccacatgt
gaaacctcgcttgatatctacaggtatattgaagactagatttaatcatt
cataatttacaggtaaagaagtgaatactgagcagccatgggctgacact
ggggtttgaacttttgttgtgattcacagtcggaatttgctctctcctgt
gcagacgagaactcaaccacttttaatggtttagttgatttgtgaagtgg
taaatggaagttttataatttactttctttttttagattgtacctataaa
tgattaatttgataaacatagttctataataagtgatacaataatagaag
atcctaaaagttagagttttactggcttagggccctgttttatagccgtg
aaagggatacgaatatattaaaaaatacctgttatagacttctcaaaagt
taagaaaaatacagcaaagcaaaaaagatcacctgtaactaccacagaaa
gtgagttatgttggcagaatttgataatcccagcactggggaagttgaga
cagaattgtgcaatggagacagttgaaaaggatcctatctcaaataaata
aacaaatgtgtaaataaataaataaccaaaatattaaaatggaaacaaag
tcagagtccagtttttctttaggctattaaacttattgacctggagctgc
ttaaaaatcaagactcatctgctattatgcttatttgtttgtttacttat
ttatattcagggccttgggagtgtaactctggaactctttgtgtagtcca
ggctagcctagaactcatggtagttcctcagcctcagcctgtccagtttt
gggattatagcatgttgtgggtgatgctatgttctcaaatggaaagaaag
gtactcaattattctgtttgggcaaaccaccaccttcttcaatgttattt
aatattaagagctcctttcaactggctctttgaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11425341_11426473
seq2: B6Ng01-321G18.g_65_1201

seq1  GAATTCTATGATTCATTGAATGTATATTTATTAGGATTCTATAGTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGATTCATTGAATGTATATTTATTAGGATTCTATAGTTGCTT  50

seq1  AGGCATTGAATAAGACCTTGAATGAGCATACCACTGAATTAATTGAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGAATAAGACCTTGAATGAGCATACCACTGAATTAATTGAGTGT  100

seq1  TGTGTCTCAGAACTTTGTTTTAATGTCAGTCTTAGAAGTCCTATTTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAGAACTTTGTTTTAATGTCAGTCTTAGAAGTCCTATTTGTAC  150

seq1  AGCACTATAAACAGTCGTAATCATAGCCTTATGGTAGGTTCACCACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTATAAACAGTCGTAATCATAGCCTTATGGTAGGTTCACCACATGT  200

seq1  GAAACCTCGCTTGATATCTACAGGTATATTGAAGACTAGATTTAATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCGCTTGATATCTACAGGTATATTGAAGACTAGATTTAATCATT  250

seq1  CATAATTTACAGGTAAAGAAGTGAATACTGAGCAGCCATGGGCTGACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTACAGGTAAAGAAGTGAATACTGAGCAGCCATGGGCTGACACT  300

seq1  GGGGTTTGAACTTTTGTTGTGATTCACAGTCGGAATTTGCTCTCTCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTGAACTTTTGTTGTGATTCACAGTCGGAATTTGCTCTCTCCTGT  350

seq1  GCAGACGAGAACTCAACCACTTTTAATGGTTTAGTTGATTTGTGAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACGAGAACTCAACCACTTTTAATGGTTTAGTTGATTTGTGAAGTGG  400

seq1  TAAATGGAAGTTTTATAATTTACTTTCTTTTTTTAGATTGTACCTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAAGTTTTATAATTTACTTTCTTTTTTTAGATTGTACCTATAAA  450

seq1  TGATTAATTTGATAAACATAGTTCTATAATAAGTGATACAATAATAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATTTGATAAACATAGTTCTATAATAAGTGATACAATAATAGAAG  500

seq1  ATCCTAAAAGTTAGAGTTTTACTGGCTTAGGGCCCTGTTTTATAGCCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAAAGTTAGAGTTTTACTGGCTTAGGGCCCTGTTTTATAGCCGTG  550

seq1  AAAGGGATACGAATATATTAAAAAATACCTGTTATAGACTTCTCAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATACGAATATATTAAAAAATACCTGTTATAGACTTCTCAAAAGT  600

seq1  TAAGAAAAATACAGCAAAGCAAAAAAGATCACCTGTAACTACCACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAATACAGCAAAGCAAAAAAGATCACCTGTAACTACCACAGAAA  650

seq1  GTGAGTTATGTTGGCAGAATTTGATAATCCCAGCACTGGGGAAGTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTATGTTGGCAGAATTTGATAATCCCAGCACTGGGGAAGTTGAGA  700

seq1  CAGAATTGTGCAATGGAGACAGTTGAAAAGGATCCTATCTCAAATAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGTGCAATGGAGACAGTTGAAAAGGATCCTATCTCAAATAAATA  750

seq1  AACAAATGTGTAAATAAATAAATAACCAAAATATTAAAATGGAAACAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGTGTAAATAAATAAATAACCAAAATATTAAAATGGAAACAAAG  800

seq1  TCAGAGTCCAGTTTTTCTTTAGGCTATTAAACTTATTGACCTGGAGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCCAGTTTTTCTTTAGGCTATTAAACTTATTGACCTGGAGCTGC  850

seq1  TTAAAAATCAAGACTCATCTGCTATTATGCTTATTTGTTTGTTTACTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCAAGACTCATCTGCTATTATGCTTATTTGTTTGTTTACTTAT  900

seq1  TTATATTCAGGGCCTT-GGAGTGTAACTCTGGAACTCTTTGTGTAGTCCA  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTATATTCAGGGCCTTGGGAGTGTAACTCTGGAACTCTTTGTGTAGTCCA  950

seq1  GGCTAGCCTAGAACTCATGGTAGTTCCTCAGCCTCAGCCTGTCCAGTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCTAGAACTCATGGTAGTTCCTCAGCCTCAGCCTGTCCAGTTTT  1000

seq1  GGGATTATAGCATGTGTTGGTTGATGCTATGTTCTCAAATGGAAAGAAA-  1048
      |||||||||||||||  ||| |||||||||||||||||||||||||||| 
seq2  GGGATTATAGCATGTTGTGGGTGATGCTATGTTCTCAAATGGAAAGAAAG  1050

seq1  GTACTCAATTATTCTGTTTGGCCAAAACACCACC-TCTTCAATGTTAATT  1097
      ||||||||||||||||||||| |||| ||||||| ||||||||||| |||
seq2  GTACTCAATTATTCTGTTTGGGCAAACCACCACCTTCTTCAATGTT-ATT  1099

seq1  TAATATT-AGAGCT-CTTTCACTTGGCTCCTTGAAAAT  1133
      ||||||| |||||| ||||||  |||||| ||||||||
seq2  TAATATTAAGAGCTCCTTTCAACTGGCTCTTTGAAAAT  1137