BAC Information

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BAC

Clone NameB6Ng01-322M04
Chromosome12 (Build37)
Map Location 114,053,995 - 114,173,690
singlet/doubletdoublet
Overlap geneBC022687, Cdca4, Gpr132, Jag2, Nudt14
Upstream geneZfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194
Downstream geneBrf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322M04.bB6Ng01-322M04.g
ACCGA111520GA111521
length1,048769
definitionB6Ng01-322M04.b B6Ng01-322M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,172,646 - 114,173,690)(114,053,995 - 114,054,761)
sequence
gaattcagtcagctagccaaacaggtcctaggtcgaagatatatatatgt
aaggtgcctctgcatttgtgtgttcccctaagtgtcagatgtcatattta
tcttgacagtttgatgatgagcctagccactggtggctgagccacctctc
cagcacggttatcaaattcatctcaaaaaatcattttagtgcccttgatg
cctacctctgccatatgatagccggcatacccaacatgcatgaggctcgc
ccgctgcagggggcaggttccgtggacataccctccccacccctgccccg
ggagtggtatttgggaagggtgaagctacacagagttctgatcatcagaa
aggcagagcgggaagcatggaagcagggtgtctggcagggccacactggt
ctctcagcagtccctgtcctacctgacaggtctggagtaggactgactag
ctccaggcagaccatgttctacgcggaggtgacagatgcccagcgaggcg
ggcctggtggagggctggccgaggagggagaactcatcgaagtgatccat
ctgaatttagatgacgcccaggccttcgcagacaaccctgacatccccaa
gactctcggggttatctacgctatctcttggttctttagccaggtggttc
cccatttgagtctccagtgagaccttggggctggacaggcctaatcccat
ccactcatcctcctgccctgcgcacccaataaagcttgtgtaagttttac
tgatgtccgctggctttgagcactgtgacctggggtgaggcactgtgtct
tggagggtagcaaggtctccatagaaaccctctggtcctcctctggtggg
gcaagtggatgacctgggaggcagatggctgtcagcgggctagcacagca
agcctggagtacttgtcaggcagagtagccagcctcatgagggaaccagg
ctaggtgtttagccttggatccctgatcaagtttccatatcagctacccc
cagtttcttggcccggaatggaaaagagggatgtaggtgggccgggtt
gaattctgtggcactgtttcccagttccatgttagtttcctaggacctct
gtcaaactaccgtataacacgtgctcaggtctgatagggagcaccgatga
taaggggcagagccagtctccatggagtttctggggacactgtaggctgg
taccaggtacctgttgacccctgcgtggctcacagttggatccatgagtt
cagaagtcagaagatagctgctgatcacttgcaggaacatgacctggccc
tcccccgtgctgtttcctggggtgttatacctatctttctctgtgttgga
tcctcacccagcagcctcggggacaagcttccctctgagtgggagggtgg
gaggacacactgggtgtcccttggtcatctgctgagacaagggttttact
ccagaggcatacacaagcaggcagtgctgcattttgtaaacttttattaa
aaagaactgtgtaagcctgtgtgtttttgttgactcattagctcttggag
aggctatggtgggactgacttgctcagaagataccagcttcactattgac
tgaactgacccagttgtccagaactagagaacagcccagacaggagggca
cacggagtgttggaactgctgctgtcaggaggggaaaatgaaatgccact
ggtgcttctgcccttgcaggcagccaccactaggtggcatctagtttgag
gcttataccaaaaggataacctgtttgtttattttggggaagcaggtgtt
tgattgggtttggggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114172646_114173690
seq2: B6Ng01-322M04.b_43_1090 (reverse)

seq1  AACCC-GCCCACCTACATCCCTCTTTTCCATCCGGGCCCAAGAAACTTGG  49
      ||||| ||||||||||||||||||||||||| | || ||||||||| |||
seq2  AACCCGGCCCACCTACATCCCTCTTTTCCATTCCGGGCCAAGAAAC-TGG  49

seq1  GGGTAGCTGATATGG-AACTTGATCAGGGATCCAAGGCTAAACACCTAGC  98
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTGATATGGAAACTTGATCAGGGATCCAAGGCTAAACACCTAGC  99

seq1  CTGGTTCCCTCATGA-GCTGGCTACTCTGCCTGAC-AGTACTCCAGGCTT  146
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  CTGGTTCCCTCATGAGGCTGGCTACTCTGCCTGACAAGTACTCCAGGCTT  149

seq1  GCTGTGCTAGCCCGCTGACAGCCATCTGCCTCCCAGGTCATCCACTTGCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTAGCCCGCTGACAGCCATCTGCCTCCCAGGTCATCCACTTGCC  199

seq1  CCACCAGAGGAGGACCAGAGGGTTTCTATGGAGACCTTGCTACCCTCCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAGGAGGACCAGAGGGTTTCTATGGAGACCTTGCTACCCTCCAA  249

seq1  GACACAGTGCCTCACCCCAGGTCACAGTGCTCAAAGCCAGCGGACATCAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTGCCTCACCCCAGGTCACAGTGCTCAAAGCCAGCGGACATCAG  299

seq1  TAAAACTTACACAAGCTTTATTGGGTGCGCAGGGCAGGAGGATGAGTGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTACACAAGCTTTATTGGGTGCGCAGGGCAGGAGGATGAGTGGA  349

seq1  TGGGATTAGGCCTGTCCAGCCCCAAGGTCTCACTGGAGACTCAAATGGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAGGCCTGTCCAGCCCCAAGGTCTCACTGGAGACTCAAATGGGG  399

seq1  AACCACCTGGCTAAAGAACCAAGAGATAGCGTAGATAACCCCGAGAGTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTGGCTAAAGAACCAAGAGATAGCGTAGATAACCCCGAGAGTCT  449

seq1  TGGGGATGTCAGGGTTGTCTGCGAAGGCCTGGGCGTCATCTAAATTCAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGTCAGGGTTGTCTGCGAAGGCCTGGGCGTCATCTAAATTCAGA  499

seq1  TGGATCACTTCGATGAGTTCTCCCTCCTCGGCCAGCCCTCCACCAGGCCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACTTCGATGAGTTCTCCCTCCTCGGCCAGCCCTCCACCAGGCCC  549

seq1  GCCTCGCTGGGCATCTGTCACCTCCGCGTAGAACATGGTCTGCCTGGAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGCTGGGCATCTGTCACCTCCGCGTAGAACATGGTCTGCCTGGAGC  599

seq1  TAGTCAGTCCTACTCCAGACCTGTCAGGTAGGACAGGGACTGCTGAGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGTCCTACTCCAGACCTGTCAGGTAGGACAGGGACTGCTGAGAGA  649

seq1  CCAGTGTGGCCCTGCCAGACACCCTGCTTCCATGCTTCCCGCTCTGCCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGGCCCTGCCAGACACCCTGCTTCCATGCTTCCCGCTCTGCCTT  699

seq1  TCTGATGATCAGAACTCTGTGTAGCTTCACCCTTCCCAAATACCACTCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGATCAGAACTCTGTGTAGCTTCACCCTTCCCAAATACCACTCCC  749

seq1  GGGGCAGGGGTGGGGAGGGTATGTCCACGGAACCTGCCCCCTGCAGCGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGGGTGGGGAGGGTATGTCCACGGAACCTGCCCCCTGCAGCGGG  799

seq1  CGAGCCTCATGCATGTTGGGTATGCCGGCTATCATATGGCAGAGGTAGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCTCATGCATGTTGGGTATGCCGGCTATCATATGGCAGAGGTAGGC  849

seq1  ATCAAGGGCACTAAAATGATTTTTTGAGATGAATTTGATAACCGTGCTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGCACTAAAATGATTTTTTGAGATGAATTTGATAACCGTGCTGG  899

seq1  AGAGGTGGCTCAGCCACCAGTGGCTAGGCTCATCATCAAACTGTCAAGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGCTCAGCCACCAGTGGCTAGGCTCATCATCAAACTGTCAAGAT  949

seq1  AAATATGACATCTGACACTTAGGGGAACACACAAATGCAGAGGCACCTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGACATCTGACACTTAGGGGAACACACAAATGCAGAGGCACCTTA  999

seq1  CATATATATATCTTCGACCTAGGACCTGTTTGGCTAGCTGACTGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATATCTTCGACCTAGGACCTGTTTGGCTAGCTGACTGAATTC  1048

seq1: chr12_114053995_114054761
seq2: B6Ng01-322M04.g_67_835

seq1  GAATTCTGTGGCACTGTTTCCCAGTTCCATGTTAGTTTCCTAGGACCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCACTGTTTCCCAGTTCCATGTTAGTTTCCTAGGACCTCT  50

seq1  GTCAAACTACCGTATAACACGTGCTCAGGTCTGATAGGGAGCACCGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACTACCGTATAACACGTGCTCAGGTCTGATAGGGAGCACCGATGA  100

seq1  TAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTGTAGGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTGTAGGCTGG  150

seq1  TACCAGGTACCTGTTGACCCCTGCGTGGCTCACAGTTGGATCCATGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTACCTGTTGACCCCTGCGTGGCTCACAGTTGGATCCATGAGTT  200

seq1  CAGAAGTCAGAAGATAGCTGCTGATCACTTGCAGGAACATGACCTGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCAGAAGATAGCTGCTGATCACTTGCAGGAACATGACCTGGCCC  250

seq1  TCCCCCGTGCTGTTTCCTGGGGTGTTATACCTATCTTTCTCTGTGTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCGTGCTGTTTCCTGGGGTGTTATACCTATCTTTCTCTGTGTTGGA  300

seq1  TCCTCACCCAGCAGCCTCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCCAGCAGCCTCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGG  350

seq1  GAGGACACACTGGGTGTCCCTTGGTCATCTGCTGAGACAAGGGTTTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACACTGGGTGTCCCTTGGTCATCTGCTGAGACAAGGGTTTTACT  400

seq1  CCAGAGGCATACACAAGCAGGCAGTGCTGCATTTTGTAAACTTTTATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCATACACAAGCAGGCAGTGCTGCATTTTGTAAACTTTTATTAA  450

seq1  AAAGAACTGTGTAAGCCTGTGTGTTTTTGTTGACTCATTAGCTCTTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTGTGTAAGCCTGTGTGTTTTTGTTGACTCATTAGCTCTTGGAG  500

seq1  AGGCTATGGTGGGACTGACTTGCTCAGAAGATACCAGCTTCACTATTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGGTGGGACTGACTTGCTCAGAAGATACCAGCTTCACTATTGAC  550

seq1  TGAACTGACCCAGTTGTCCAGAACTAGAGAACAGCCCAGACAGGAGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGACCCAGTTGTCCAGAACTAGAGAACAGCCCAGACAGGAGGGCA  600

seq1  CACGGAGTGTTGGAACTGCTGCTGTCAGGAGGGGAAAATGAAATGCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGTGTTGGAACTGCTGCTGTCAGGAGGGGAAAATGAAATGCCACT  650

seq1  GGTGCTTCTGCCCTTGCAGGCAGCCACCACTAGGTGGCATCTAGTTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCTGCCCTTGCAGGCAGCCACCACTAGGTGGCATCTAGTTTGAG  700

seq1  GCTTATACCAAAAGGATAACCTG-TTGTTTATTTTGGGGAAGCAGGTGTT  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTTATACCAAAAGGATAACCTGTTTGTTTATTTTGGGGAAGCAGGTGTT  750

seq1  TGATTGGGTTT-GGGTTTG  767
      ||||||||||| |||||||
seq2  TGATTGGGTTTGGGGTTTG  769