BAC Information

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BAC

Clone NameB6Ng01-323A05
Chromosome12 (Build37)
Map Location 96,145,034 - 96,288,124
singlet/doubletdoublet
Overlap geneLOC217786
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC100039603, LOC667688, Flrt2, 1700019M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323A05.bB6Ng01-323A05.g
ACCGA111704GA111705
length1,137601
definitionB6Ng01-323A05.b B6Ng01-323A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,145,034 - 96,146,178)(96,287,546 - 96,288,124)
sequence
tgcagtatctaaatgttcagtgtgttaagtgacatagaaaatattattag
agaagtaacttataataaggacttctaacattgaaatatttgcatggatg
ctgttactgctcgctctgcaatactaccacaagttaaacagataagatta
ttagaaaaatgatttgactaaaggtctgcattctaataagtaatttcata
gtttaacataaatttcaacaaatgattattaaaatttgacagaaaagaaa
atgttttcattgctactgaaaggctaaactattacagggaaaatatacat
tgcaaccctttaaaactaacacaccgagaagtctgatttttttttttaaa
gcatctattatcattgttactgttacttattttacagtctagtttggtat
catagtaatattatcacgtttgcctatttgaatcatgtttatttaaattc
atttttcttttcttttcttttcttttttttttttttttttttttagtttt
ttcgagacagggtttctctgtatagccctggctgtcctggaactcacttt
gtagaccaaactggcctcgaactcagaaatccacctgcctctgcctccca
cccccaagtgtttggattaaaggcatgcgccaccacacccagcctttaaa
attttttttcactttttaactgatgtttcaaatttattaatatataaata
ttgctgttcatcaaaacaacaatagtaatttttaaagtattgatagggaa
tgtgtaaggacaatccaataaaacaccagtatctcaatggcttctctcag
aacatgaataaaacaataaattatatcacttagcatttaccttttgattg
aaattatggaaaattctattttcagtattttttcatttagaaagtgtttc
ccttgaaaaaatgtcttacagtaccaaaatggttctagaatggagaggaa
atttataaaatatacatcataataaattttgaataaggcctatacaacaa
atattttgttacatttagaagtgaacacaaaacctatgcacttactctaa
gtacaatagctaaatttatagtattaaataaagtctccaacacatttggg
aatttgttattttttcttacagtaacataacaaaatg

gaattcactttgtagaccaggctggcctcgacctcagaaatcctcctgcc
tctgcctcccgagtgctggaattaaaggcgtgtgccaccacgcctagtat
tatttcatcttttttttttcatacacacacacacgaataaatacatacac
ttatacacattttactttgttataaataaaagttaacctaaatggtttgg
tatccataatttcgaaacagaaagaccacatttgttggtaaagacagggt
cctaccaaaatggagcaaagactgaaggaaaggctatccagtgattggcc
caacttgggatccatcccatgcacaggtaccaaaccctgacactatactg
ataccacgttgtgcttacaggcaggagcctagcatggctgtccactgaga
tttaccagcatgcgtggcctgaaaacaagtctctaaggaaaaactgctgt
gtttggataaaagaaataaaaaagtccacaaacacacctatgcttcacta
tatatttaatataaagtaaatgtaaatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96145034_96146178
seq2: B6Ng01-323A05.b_54_1190

seq1  TGCAGTATCTAAATGTTCAGTGTGTTAAGTGACATAGAAAATATTATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATCTAAATGTTCAGTGTGTTAAGTGACATAGAAAATATTATTAG  50

seq1  AGAAGTAACTTATAATAAGGACTTCTAACATTGAAATATTTGCATGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAACTTATAATAAGGACTTCTAACATTGAAATATTTGCATGGATG  100

seq1  CTGTTACTGCTCGCTCTGCAATACTACCACAAGTTAAACAGATAAGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACTGCTCGCTCTGCAATACTACCACAAGTTAAACAGATAAGATTA  150

seq1  TTAGAAAAATGATTTGACTAAAGGTCTGCATTCTAATAAGTAATTTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAATGATTTGACTAAAGGTCTGCATTCTAATAAGTAATTTCATA  200

seq1  GTTTAACATAAATTTCAACAAATGATTATTAAAATTTGACAGAAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACATAAATTTCAACAAATGATTATTAAAATTTGACAGAAAAGAAA  250

seq1  ATGTTTTCATTGCTACTGAAAGGCTAAACTATTACAGGGAAAATATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCATTGCTACTGAAAGGCTAAACTATTACAGGGAAAATATACAT  300

seq1  TGCAACCCTTTAAAACTAACACACCGAGAAGTCTGATTTTTTTTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCTTTAAAACTAACACACCGAGAAGTCTGATTTTTTTTTTTAAA  350

seq1  GCATCTATTATCATTGTTACTGTTACTTATTTTACAGTCTAGTTTGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTATTATCATTGTTACTGTTACTTATTTTACAGTCTAGTTTGGTAT  400

seq1  CATAGTAATATTATCACGTTTGCCTATTTGAATCATGTTTATTTAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAATATTATCACGTTTGCCTATTTGAATCATGTTTATTTAAATTC  450

seq1  ATTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTAGTTTT  500

seq1  TTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTT  550

seq1  GTAGACCAAACTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAAACTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCA  600

seq1  CCCCCAAGTGTTTGGATTAAAGGCATGCGCCACCACACCCAGCCTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGTGTTTGGATTAAAGGCATGCGCCACCACACCCAGCCTTTAAA  650

seq1  ATTTTTTTTCACTTTTTAACTGATGTTTCAAATTTATTAATATATAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTCACTTTTTAACTGATGTTTCAAATTTATTAATATATAAATA  700

seq1  TTGCTGTTCATCAAAACAACAATAGTAATTTTTAAAGTATTGATAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTCATCAAAACAACAATAGTAATTTTTAAAGTATTGATAGGGAA  750

seq1  TGTGTAAGGACAATCCAATAAAACACCAGTATCTCAATGGCTTCTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGGACAATCCAATAAAACACCAGTATCTCAATGGCTTCTCTCAG  800

seq1  AACATGAATAAAACAATAAATTATATCACTTAGCATTTACCTTTTGATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAATAAAACAATAAATTATATCACTTAGCATTTACCTTTTGATTG  850

seq1  AAATTATGGAAAATTCTATTTTCAGTATTTTTTCATTTAGAAAGTGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGGAAAATTCTATTTTCAGTATTTTTTCATTTAGAAAGTGTTTC  900

seq1  CCTTGAAAAAATGTCTTACAGTACCAAAATGGTTCTAGAATGGAGAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAAAAATGTCTTACAGTACCAAAATGGTTCTAGAATGGAGAGGAA  950

seq1  ATTTATAAAATATACAATCATAATAAATTTTGAATAA-GCCTATACAACA  999
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  ATTTATAAAATATAC-ATCATAATAAATTTTGAATAAGGCCTATACAACA  999

seq1  AATA-TTTGTTACATTTAGAAGTGAAACACAAAA-CTATGCACTTACTCT  1047
      |||| ||||||||||||||||||| ||||||||| |||||||||||||||
seq2  AATATTTTGTTACATTTAGAAGTG-AACACAAAACCTATGCACTTACTCT  1048

seq1  AAAGTACAATAGCTAAAATTATATAGTATTAAATAAAAGTCTCACACACA  1097
       ||||||||||||||||  | ||||||||||||| ||||||||  |||||
seq2  -AAGTACAATAGCTAAA--TTTATAGTATTAAAT-AAAGTCTCCAACACA  1094

seq1  TATTTGGATATGTTATTTTTTCTTGTACAGTTAACAATAAACAAAATG  1145
      | |  | || |||||||||||||  ||||| |||||   |||||||||
seq2  TTTGGGAATTTGTTATTTTTTCT--TACAG-TAACA--TAACAAAATG  1137


seq1: chr12_96287546_96288124
seq2: B6Ng01-323A05.g_61_639 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATATTTACATTTACTTTATATTAAATATATAGTGAAGCATAGGTGTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACATTTACTTTATATTAAATATATAGTGAAGCATAGGTGTGTTT  100

seq1  GTGGACTTTTTTATTTCTTTTATCCAAACACAGCAGTTTTTCCTTAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTTTTTTATTTCTTTTATCCAAACACAGCAGTTTTTCCTTAGAGA  150

seq1  CTTGTTTTCAGGCCACGCATGCTGGTAAATCTCAGTGGACAGCCATGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTCAGGCCACGCATGCTGGTAAATCTCAGTGGACAGCCATGCTA  200

seq1  GGCTCCTGCCTGTAAGCACAACGTGGTATCAGTATAGTGTCAGGGTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGCCTGTAAGCACAACGTGGTATCAGTATAGTGTCAGGGTTTGG  250

seq1  TACCTGTGCATGGGATGGATCCCAAGTTGGGCCAATCACTGGATAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGCATGGGATGGATCCCAAGTTGGGCCAATCACTGGATAGCCTT  300

seq1  TCCTTCAGTCTTTGCTCCATTTTGGTAGGACCCTGTCTTTACCAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGTCTTTGCTCCATTTTGGTAGGACCCTGTCTTTACCAACAAAT  350

seq1  GTGGTCTTTCTGTTTCGAAATTATGGATACCAAACCATTTAGGTTAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTTCTGTTTCGAAATTATGGATACCAAACCATTTAGGTTAACTT  400

seq1  TTATTTATAACAAAGTAAAATGTGTATAAGTGTATGTATTTATTCGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAACAAAGTAAAATGTGTATAAGTGTATGTATTTATTCGTGTG  450

seq1  TGTGTGTATGAAAAAAAAAAGATGAAATAATACTAGGCGTGGTGGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGAAAAAAAAAAGATGAAATAATACTAGGCGTGGTGGCACAC  500

seq1  GCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGGTC  550

seq1  GAGGCCAGCCTGGTCTACAAAGTGAATTC  579
      |||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAAAGTGAATTC  579


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