BAC Information

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BAC

Clone NameB6Ng01-323O19
Chromosome12 (Build37)
Map Location 8,846,421 - 9,071,874
singlet/doubletdoublet
Overlap geneLaptm4a, Matn3, Wdr35, Ttc32
Upstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1
Downstream geneLOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323O19.bB6Ng01-323O19.g
ACCGA112373GA112374
length1,1161,067
definitionB6Ng01-323O19.b B6Ng01-323O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,846,421 - 8,847,527)(9,070,810 - 9,071,874)
sequence
gaattcaaccttcttttcgggtattctctttaccagttagcactaaaaca
ggaaggacagtgctgttggaacctaaaagatgaccaccaggccttgcgtt
ctgatttctgcctgctctgtactccagtgagctttgcccatttatagaaa
ctctgtgggatttggaagcccaggcaattccggccgtcccatggccatcg
gcatgcccatgatcaaggcaggcccattgggtacagatggcagagcttgc
cagcaaataggaagtgacagggtggtctgtggggaattcatttgccaatt
agtgacttgtctcagcccagtctctggtctccacatgtccacggtttata
tcttaccccgtgcagctgaggtttgcatgcagatctgccaggcaaccctg
gaaaagccagccatgaacaccaaatgaacctcagccccagaagttttcca
tatccttctagacgttcacagactaagtcctctccatatgcttcaggaaa
tgtaccaggaagaaatcaaattaactccaccattgtcccctcacttaagg
gggcatgtgtctcccatctaaatggctacgaggcagtgagcagcctttca
agtaagccttatatcctcattgatttttattataaaattgggatttcttt
ttttctggaggccaaaaagccaaaacaaaacaactctggccatctaaata
caacttttaaacatcctacttgaggtctagaagacctaagcatatcatgt
atggaaaatgtaaacacagaagaaactcaataagatatacatattaataa
cacaagcccataaaacagtgattctcaacttgtggattatgacccattta
ggggttgagtggctctttcacaggggtgacctaagaccatcagaaaatac
agattatgattcataacaatggcaaaatcacaaagtagcaatgaaaataa
ttgtatggttgaggatcaccacaaagtgaggaactattattaaaggttca
cagcattcaggaaggttgagaaccactgctgatagagtaagacaagaaca
tgacttactgtccttccaggtcagtcttgtaccatggtgaggtccgggga
gcagaaagtccacagc
gaattccaaaatagtgttgagatggttcaaagggacatactcaacaaacc
gcgagcacaggaggggccagcacaatgcaagggttctcccactcactcca
ttacctcagtgctccagggaaacagggggttctaggacttttctcaaggt
tgtacagctagtaacacgggcttctctcgcgtctggtacctcatgccatg
ctgtgggacagtagacatcctgaccccttaggttcagtcatctggttgca
tatgaaatccagacatgagtctcagacccagcatcccaaataccgtcagt
aaaatgtgtgagaagatgggctatccctatacactgctgctgactgcgtg
tatctgccaatatttgtccgcagtatattggggttgagaagtgtgatctt
catggctaagtcaggagggcagagagcactgtcccaagagaaggtttatg
atctctaaggtagattttgatgaaaggaagatttgggttctccctccctc
ccttcctcccttcctccctctcaccacacgaggtcttctccatttaatga
ttcaacaaaatgtcccaaacatggctcttgaccttgaacttccagtctcc
aaaccagaagctaacaaagccctgttgttcgttccccagtctgtgctgtt
ctgctacagcaggcaagaatatacaccacactgaggaaagaggccgtgag
agctgagagctcaaggggcccccgtgcaattccaggcacctcagaggaag
taccagggcatcattaataccagggtgggtcagtgctataaaggaggctg
caggtaattcatacactgcagaggttgctgatggcccagatacagtgtgt
gtggagaaaggccctaatccctacagccacagggcctccaggagacagag
atgactcttcaaaaccaggatctaattctgacttctctggaccttggagg
acagcaacaggcatgaggaaagagacctggtctcatctctagctctcaca
actaggaaatcctcaaaggcaatgtttttctcagagccttgtgctttcct
aataaagttccaaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8846421_8847527
seq2: B6Ng01-323O19.b_45_1160

seq1  GAATTCAACCTTCTTTTCGGGTATTCTCTTTACCAGTTAGCACTAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTCTTTTCGGGTATTCTCTTTACCAGTTAGCACTAAAACA  50

seq1  GGAAGGACAGTGCTGTTGGAACCTAAAAGATGACCACCAGGCCTTGCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACAGTGCTGTTGGAACCTAAAAGATGACCACCAGGCCTTGCGTT  100

seq1  CTGATTTCTGCCTGCTCTGTACTCCAGTGAGCTTTGCCCATTTATAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTGCCTGCTCTGTACTCCAGTGAGCTTTGCCCATTTATAGAAA  150

seq1  CTCTGTGGGATTTGGAAGCCCAGGCAATTCCGGCCGTCCCATGGCCATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGGATTTGGAAGCCCAGGCAATTCCGGCCGTCCCATGGCCATCG  200

seq1  GCATGCCCATGATCAAGGCAGGCCCATTGGGTACAGATGGCAGAGCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCATGATCAAGGCAGGCCCATTGGGTACAGATGGCAGAGCTTGC  250

seq1  CAGCAAATAGGAAGTGACAGGGTGGTCTGTGGGGAATTCATTTGCCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATAGGAAGTGACAGGGTGGTCTGTGGGGAATTCATTTGCCAATT  300

seq1  AGTGACTTGTCTCAGCCCAGTCTCTGGTCTCCACATGTCCACGGTTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTGTCTCAGCCCAGTCTCTGGTCTCCACATGTCCACGGTTTATA  350

seq1  TCTTACCCCGTGCAGCTGAGGTTTGCATGCAGATCTGCCAGGCAACCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCCGTGCAGCTGAGGTTTGCATGCAGATCTGCCAGGCAACCCTG  400

seq1  GAAAAGCCAGCCATGAACACCAAATGAACCTCAGCCCCAGAAGTTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCAGCCATGAACACCAAATGAACCTCAGCCCCAGAAGTTTTCCA  450

seq1  TATCCTTCTAGACGTTCACAGACTAAGTCCTCTCCATATGCTTCAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCTAGACGTTCACAGACTAAGTCCTCTCCATATGCTTCAGGAAA  500

seq1  TGTACCAGGAAGAAATCAAATTAACTCCACCATTGTCCCCTCACTTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGGAAGAAATCAAATTAACTCCACCATTGTCCCCTCACTTAAGG  550

seq1  GGGCATGTGTCTCCCATCTAAATGGCTACGAGGCAGTGAGCAGCCTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTGTCTCCCATCTAAATGGCTACGAGGCAGTGAGCAGCCTTTCA  600

seq1  AGTAAGCCTTATATCCTCATTGATTTTTATTATAAAATTGGGATTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCTTATATCCTCATTGATTTTTATTATAAAATTGGGATTTCTTT  650

seq1  TTTTCTGGAGGCCAAAAAGCCAAAACAAAACAACTCTGGCCATCTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGAGGCCAAAAAGCCAAAACAAAACAACTCTGGCCATCTAAATA  700

seq1  CAACTTTTAAACATCCTACTTGAGGTCTAGAAGACCTAAGCATATCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTAAACATCCTACTTGAGGTCTAGAAGACCTAAGCATATCATGT  750

seq1  ATGGAAAATGTAAACACAGAAGAAACTCAATAAGATATACATATTAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATGTAAACACAGAAGAAACTCAATAAGATATACATATTAATAA  800

seq1  CACAAGCCCATAAAACAGTGATTCTCAACTTGTGGATTATGACCCATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCCATAAAACAGTGATTCTCAACTTGTGGATTATGACCCATTTA  850

seq1  GGGGTTGAGTGGCTCTTTCACAGGGGTGACCTAAGACCATCAGAAAATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGAGTGGCTCTTTCACAGGGGTGACCTAAGACCATCAGAAAATAC  900

seq1  AGATTATGATTCATAACAATGGCAAAATCACAAAGTAGCAATGAAAATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGATTCATAACAATGGCAAAATCACAAAGTAGCAATGAAAATAA  950

seq1  TTGTATGGTTGAGGATCACCACAAAGTGAGGAACTA-TATTAAAGGGTCA  999
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TTGTATGGTTGAGGATCACCACAAAGTGAGGAACTATTATTAAAGGTTCA  1000

seq1  CAGCA-TCAGGAAGGTTGAGAACCACTGCTGATAGAG-AAGACAAGACAT  1047
      ||||| ||||||||||||||||||||||||||||||| |||||||||   
seq2  CAGCATTCAGGAAGGTTGAGAACCACTGCTGATAGAGTAAGACAAGAACA  1050

seq1  TGAC-TACTGTC--TTCAAGTCAGTCTTGTA-CAT-GTGAGGTCGGGGAG  1092
      |||| |||||||  | || |||||||||||| ||| |||||||| |||  
seq2  TGACTTACTGTCCTTCCAGGTCAGTCTTGTACCATGGTGAGGTCCGGGGA  1100

seq1  GCAGAGAG-CCACAGC  1107
      ||||| || |||||||
seq2  GCAGAAAGTCCACAGC  1116

seq1: chr12_9070810_9071874
seq2: B6Ng01-323O19.g_70_1136 (reverse)

seq1  TGCTTTGG-ACTTTATTAGGGAAGCACAAGGCTCTGAG-AAAACATTGCC  48
      |||||||| ||||||||||| ||||||||||||||||| |||||||||||
seq2  TGCTTTGGAACTTTATTAGGAAAGCACAAGGCTCTGAGAAAAACATTGCC  50

seq1  TCTGAGGATCTCCTAGTTTGTGAGAGCTGGAGATGAGACCAGGTCTCTTT  98
      | ||||||| |||||| ||||||||||| |||||||||||||||||||||
seq2  TTTGAGGATTTCCTAG-TTGTGAGAGCTAGAGATGAGACCAGGTCTCTTT  99

seq1  CCTCACTGCCTGTTGCTGTCCTCCAAGGTCAAGAGGAGTCAGAATTAGAT  148
      ||||| |||||||||||||||||||||||| |||| ||||||||||||||
seq2  CCTCA-TGCCTGTTGCTGTCCTCCAAGGTCCAGAGAAGTCAGAATTAGAT  148

seq1  CCTGGTTTTGAAGAGTCATCTCTGTCTCCTGGAGGCCCTGTGGCTGTAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTTGAAGAGTCATCTCTGTCTCCTGGAGGCCCTGTGGCTGTAGG  198

seq1  GA-TAGGGCC-TTCTCCACACACACTGTATCTGGGCCATCAGCAACCTCT  246
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGGCCTTTCTCCACACACACTGTATCTGGGCCATCAGCAACCTCT  248

seq1  GCAGTGTATGAATTACCTGCAGCCTCCTTTATAGCACTGACCCACCCTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTATGAATTACCTGCAGCCTCCTTTATAGCACTGACCCACCCTGG  298

seq1  TATTAATGATGCCCTGGTACTTCCTCTGAGGTGCCTGGAATTGCACGGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGATGCCCTGGTACTTCCTCTGAGGTGCCTGGAATTGCACGGGG  348

seq1  GCCCCTTGAGCTCTCAGCTCTCACGGCCTCTTTCCTCAGTGTGGTGTATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTGAGCTCTCAGCTCTCACGGCCTCTTTCCTCAGTGTGGTGTATA  398

seq1  TTCTTGCCTGCTGTAGCAGAACAGCACAGACTGGGGAACGAACAACAGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCTGCTGTAGCAGAACAGCACAGACTGGGGAACGAACAACAGGG  448

seq1  CTTTGTTAGCTTCTGGTTTGGAGACTGGAAGTTCAAGGTCAAGAGCCATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAGCTTCTGGTTTGGAGACTGGAAGTTCAAGGTCAAGAGCCATG  498

seq1  TTTGGGACATTTTGTTGAATCATTAAATGGAGAAGACCTCGTGTGGTGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGACATTTTGTTGAATCATTAAATGGAGAAGACCTCGTGTGGTGAG  548

seq1  AGGGAGGAAGGGAGGAAGGGAGGGAGGGAGAACCCAAATCTTCCTTTCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAAGGGAGGAAGGGAGGGAGGGAGAACCCAAATCTTCCTTTCAT  598

seq1  CAAAATCTACCTTAGAGATCATAAACCTTCTCTTGGGACAGTGCTCTCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTACCTTAGAGATCATAAACCTTCTCTTGGGACAGTGCTCTCTG  648

seq1  CCCTCCTGACTTAGCCATGAAGATCACACTTCTCAACCCCAATATACTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGACTTAGCCATGAAGATCACACTTCTCAACCCCAATATACTGC  698

seq1  GGACAAATATTGGCAGATACACGCAGTCAGCAGCAGTGTATAGGGATAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATATTGGCAGATACACGCAGTCAGCAGCAGTGTATAGGGATAGC  748

seq1  CCATCTTCTCACACATTTTACTGACGGTATTTGGGATGCTGGGTCTGAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCTCACACATTTTACTGACGGTATTTGGGATGCTGGGTCTGAGA  798

seq1  CTCATGTCTGGATTTCATATGCAACCAGATGACTGAACCTAAGGGGTCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCTGGATTTCATATGCAACCAGATGACTGAACCTAAGGGGTCAG  848

seq1  GATGTCTACTGTCCCACAGCATGGCATGAGGTACCAGACGCGAGAGAAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTACTGTCCCACAGCATGGCATGAGGTACCAGACGCGAGAGAAGC  898

seq1  CCGTGTTACTAGCTGTACAACCTTGAGAAAAGTCCTAGAACCCCCTGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTTACTAGCTGTACAACCTTGAGAAAAGTCCTAGAACCCCCTGTTT  948

seq1  CCCTGGAGCACTGAGGTAATGGAGTGAGTGGGAGAACCCTTGCATTGTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGCACTGAGGTAATGGAGTGAGTGGGAGAACCCTTGCATTGTGC  998

seq1  TGGCCCCTCCTGTGCTCGCGGTTTGTTGAGTATGTCCCTTTGAACCATCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTCCTGTGCTCGCGGTTTGTTGAGTATGTCCCTTTGAACCATCT  1048

seq1  CAACACTATTTTGGAATTC  1065
      |||||||||||||||||||
seq2  CAACACTATTTTGGAATTC  1067