BAC Information

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BAC

Clone NameB6Ng01-324E02
Chromosome12 (Build37)
Map Location 10,398,170 - 10,399,244
singlet/doubletsinglet
Overlap geneRdh14
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567, Nt5c1b
Downstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324E02.bB6Ng01-324E02.g
ACCGA112618GA112619
length1,2111,088
definitionB6Ng01-324E02.b B6Ng01-324E02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagtacaatgggcctcatatcaaattccttaagttcattcaaag
tcagtatctccctcacccagaaatcttttgaatgatcaccacatcaaagg
tctttccagctcaaaaatattcacactcttacaactgttatcttaaatat
ttaattgttataggtttctttggttaaatgtaattctcagaagtcttgaa
agatcgactcactgatgtcaaacgatagggaagagttcctttatatctgg
tttgaactcctggatatccaacgccttttctcacttcctccttggaatgt
cttccttcatccctgtggtttcctttcctttatccatttccttcagaatc
ttgtaactttcgctctttatcttcattgacttttgtggtcttgtttccca
gtgaatatatgaagaaatgctctcatcgctctatagtgacatgtctaaga
aatctagcagtccttcagtaattctagaatcagcgtttttaattttttta
attttattttgtgattgggttatctcactcaggctgataccctccagatc
tatccatttgtctaggaatttcataaattcattgtttttaatagctaagt
agtactccattgtgtaaatgtaccacattttctgtatccattcctctctt
gagggacatctgggttctttctaccttctggctattataaataaggctgc
agagctaaacaaagaattctcaactgaggaatattgaatggctgagaagc
acctgaaaaatgttcaacattcttaatcatcagggaaatgcaaatcaaaa
caaccctgagattccacctcacaccagtcagaatggctaagatcaaaaat
tcatgtgacagcagatgctggcaaggatgtgggagaaagaggaacactcc
tccattgctggtgggattacaagctggtacaaccactgtggaaatcagtc
tggctgttgctcagaaaattggacatagtactaccgggaggattcccaat
atctctctgggcatatatccagaagatgtcccactggtaataagacattc
actgatgagttgatttagctcagaaacttagaataccaagaatacattgc
aaaacacatgatctccaagggagaagagagcaagtggtgacaccttgccc
tctgatggacaaactcctatgaaggattaaccgagaattatagctttgtg
gactctggatc
gaattcctgggaggtcctaaggagaagtgcataaataagccagtgtctgg
acatttggttttgttaggctaggacagtcaccagctgatctttgagttgt
tttccccctgtcagaagtgaaatgtgtgccaaatcttacagtgtcacaag
gcctgtgagcaccacaggagaaaagctagccaaaaactttcattagaccc
ttcttaaaacttttctttctgtttttttcccctcgttacctggttttgtt
tgtttgtttgttttttctttttttgttttgttttgtcctgctgaagtagg
agggggtgtcacttgctgacaccctgcatcatccctaaacttggaatccc
attaagtgtctgaaaagggacaggaataaaaataatttaatgcttagctt
tatggaaggttttatacatgccaggggatgtgctaaggacatttttaata
tctttggctattatcagatcttgtaaagcaagcaataatatctctacttc
atgatagggaactgaggcataggaaggctaagtgacgtgtctgtcttcag
agtccttgctttaatctcctgttgtgcattcctagtacttgaaggctgag
gtgtgtgatttccttgggtgtacagtaaatattctaccgaagtagaaagg
ctgtggccaaagtgacttgccacaggtagatctaaaggcagacacaggag
ggtgcttgtctcttctgaaatctcttgaaatctaaggcagacattctaaa
tggcctgttttttcttttccgtgatgtacttagaccaaaagaaatatctg
taagttcattttgttaacatttagatattttaactctgacaattcttatt
agtgggactgtggcatgtttggaacactatactaacttttccaccttcaa
ggttagatgggacacagccaccttcattcttgttcaacatagacttcttt
tttttttttaacttttcacctggcacttgagaacagtagctaataacttc
taataactgcttaaaagtccaactgtaccaagaaatcctcttctaccgaa
gaaaaaccctaattgaacccctttggagtagtagttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10398170_10399244
seq2: B6Ng01-324E02.g_65_1152

seq1  GAATTCCTGGGAGGTCCTAAGGAGAAGTGCATAAATAAGCCAGTGTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAGGTCCTAAGGAGAAGTGCATAAATAAGCCAGTGTCTGG  50

seq1  ACATTTGGTTTTGTTAGGCTAGGACAGTCACCAGCTGATCTTTGAGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGTTTTGTTAGGCTAGGACAGTCACCAGCTGATCTTTGAGTTGT  100

seq1  TTTCCCCCTGTCAGAAGTGAAATGTGTGCCAAATCTTACAGTGTCACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTGTCAGAAGTGAAATGTGTGCCAAATCTTACAGTGTCACAAG  150

seq1  GCCTGTGAGCACCACAGGAGAAAAGCTAGCCAAAAACTTTCATTAGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGCACCACAGGAGAAAAGCTAGCCAAAAACTTTCATTAGACCC  200

seq1  TTCTTAAAACTTTTCTTTCTGTTTTTTTCCCCTCGTTACCTGGTTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAACTTTTCTTTCTGTTTTTTTCCCCTCGTTACCTGGTTTTGTT  250

seq1  TGTTTGTTTGTTTTTTCTTTTTTTGTTTTGTTTTGTCCTGCTGAAGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTTCTTTTTTTGTTTTGTTTTGTCCTGCTGAAGTAGG  300

seq1  AGGGGGTGTCACTTGCTGACACCCTGCATCATCCCTAAACTTGGAATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGTCACTTGCTGACACCCTGCATCATCCCTAAACTTGGAATCCC  350

seq1  ATTAAGTGTCTGAAAAGGGACAGGAATAAAAATAATTTAATGCTTAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGTCTGAAAAGGGACAGGAATAAAAATAATTTAATGCTTAGCTT  400

seq1  TATGGAAGGTTTTATACATGCCAGGGGATGTGCTAAGGACATTTTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGGTTTTATACATGCCAGGGGATGTGCTAAGGACATTTTTAATA  450

seq1  TCTTTGGCTATTATCAGATCTTGTAAAGCAAGCAATAATATCTCTACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCTATTATCAGATCTTGTAAAGCAAGCAATAATATCTCTACTTC  500

seq1  ATGATAGGGAACTGAGGCATAGGAAGGCTAAGTGACGTGTCTGTCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGGGAACTGAGGCATAGGAAGGCTAAGTGACGTGTCTGTCTTCAG  550

seq1  AGTCCTTGCTTTAATCTCCTGTTGTGCATTCCTAGTACTTGAAGGCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTGCTTTAATCTCCTGTTGTGCATTCCTAGTACTTGAAGGCTGAG  600

seq1  GTGTGTGATTTCCTTGGGTGTACAGTAAATATTCTACCGAAGTAGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGATTTCCTTGGGTGTACAGTAAATATTCTACCGAAGTAGAAAGG  650

seq1  CTGTGGCCAAAGTGACTTGCCACAGGTAGATCTAAAGGCAGACACAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCAAAGTGACTTGCCACAGGTAGATCTAAAGGCAGACACAGGAG  700

seq1  GGTGCTTGTCTCTTCTGAAATCTCTTG-AATCTAAGGCAGACATTCTAAA  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTGCTTGTCTCTTCTGAAATCTCTTGAAATCTAAGGCAGACATTCTAAA  750

seq1  TGGCCTG-TTTTTCTTTTCCGTGATGTACTTAGACCAAAAGAAATATCTG  798
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTTTTTTCTTTTCCGTGATGTACTTAGACCAAAAGAAATATCTG  800

seq1  TAAGTTCA-TTTGTTAACATTTAGATA-TTTAACTCTGACAATTCTTATT  846
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  TAAGTTCATTTTGTTAACATTTAGATATTTTAACTCTGACAATTCTTATT  850

seq1  AGTGGGACTGTGGCATGTT--GGACACTATACTAACTTTTCCAACCTCCA  894
      |||||||||||||||||||  | |||||||||||||||||||| | || |
seq2  AGTGGGACTGTGGCATGTTTGGAACACTATACTAACTTTTCCACCTTCAA  900

seq1  AGTTAGAT-GGACACAGCCACCTTCATTCTTGTTCAACATAGACTTCTTT  943
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGATGGGACACAGCCACCTTCATTCTTGTTCAACATAGACTTCTTT  950

seq1  TTTTTTTTTAACTTTTCA-CTTGCAC-TGAAAACAGTAGCTAATAACTAC  991
      |||||||||||||||||| || |||| ||| ||||||||||||||||| |
seq2  TTTTTTTTTAACTTTTCACCTGGCACTTGAGAACAGTAGCTAATAACTTC  1000

seq1  TAATAACTGC-TAAAAGCACAACTGTACAAAGAAACCATC-TCATCAGAA  1039
      |||||||||| ||||||  ||||||||| |||||| | || ||  | |||
seq2  TAATAACTGCTTAAAAGTCCAACTGTACCAAGAAATCCTCTTCTACCGAA  1050

seq1  GAGAGACCAT-ATTGAACCAC-TTGGAGTAGTAGTTAT  1075
      || | ||| | |||||||| | ||||||||||||||||
seq2  GAAAAACCCTAATTGAACCCCTTTGGAGTAGTAGTTAT  1088